Trigger and data link system for CMS Resistive Plate Chambers at the LHC accelerator

The purpose of the work was to realize a high-speed digital data transfer system for RPC muon chambers in the CMS experiment on CERN’s new LHC accelerator. This large scale system took many years and many stages of prototyping to develop, and required the participation of tens of people. The system interfaces to Frontend Boards (FEB) at the 200,000-channel detector and to the trigger and readout electronics in the control room of the experiment. The distance between these two is about 80 metres and the speed required for the optic links was pushing the limits of available technology when the project was started. Here, as in many other aspects of the design, it was assumed that the features of readily available commercial components would develop in the course of the design work, just as they did. By choosing a high speed it was possible to multiplex the data from some the chambers into the same fibres to reduce the number of links needed. Further reduction was achieved by employing zero suppression and data compression, and a total of only 660 optical links were needed. Another requirement, which conflicted somewhat with choosing the components a late as possible was that the design needed to be radiation tolerant to an ionizing dose of 100 Gy and to a have a moderate tolerance to Single Event Effects (SEEs). This required some radiation test campaigns, and eventually led to ASICs being chosen for some of the critical parts. The system was made to be as reconfigurable as possible. The reconfiguration needs to be done from a distance as the electronics is not accessible except for some short and rare service breaks once the accelerator starts running. Therefore reconfigurable logic is extensively used, and the firmware development for the FPGAs constituted a sizable part of the work. Some special techniques needed to be used there too, to achieve the required radiation tolerance. The system has been demonstrated to work in several laboratory and beam tests, and now we are waiting to see it in action when the LHC will start running in the autumn 2008.

Development of IT Service Management in a Large International Company

The purpose of this Master’s thesis is to examine the IT Service Management (ITSM) capabilities of a large international company and develop a design for the IT Service Management of the company. The thesis consists of two parts: a literature review and a case study. The first part is the literature review. It examines different aspects of IT Service Management. The purpose of the literature review is to increase the credibility of the case study. In the case study, the IT Service Management of a large industrial company is assessed, and an improved design for IT Service Management is created. The services are limited to common IT services, and management is limited to operative management. To assess and develop the case company’s IT Service Management, the IT organization and its ITSM capabilities are analyzed, and on the basis of the analyses, an improved IT Service Management model is created. As a result of the analyses, it was found out that the management of the IT organization is function-oriented. Therefore, the organization needs a management model that breaks the functional borders and brings services to the center of management. The designed model aspires to achieve this by defining IT services and modeling management processes from the service perspective.

Challenges and Means for the Front End Activities of Software Development

The front end of innovation is regarded as one of the most important steps in building new software products or services, and the most significant benefits in software development can be achieved through improvements in the front end activities. Problems in the front end phase have an impact on customer dissatisfaction with delivered software, and on the effectiveness of the entire software development process. When these processes are improved, the likelihood of delivering high quality software and business success increases. This thesis highlights the challenges and problems related to the early phases of software development, and provides new methods and tools for improving performance in the front end activities of software development. The theoretical framework of this study comprises two fields of research. The first section belongs to the field of innovation management, and especially to the management of the early phases of the innovation process, i.e. the front end of innovation. The second section of the framework is closely linked to the processes of software engineering, especially to the early phases of the software development process, i.e. the practice of requirements engineering. Thus, this study extends the theoretical knowledge and discloses the differences and similarities in these two fields of research. In addition, this study opens up a new strand for academic discussion by connecting these research directions. Several qualitative business research methodologies have been utilized in the individual publications to solve the research questions. The theoretical and managerial contribution of the study can be divided into three areas: 1) processes and concepts, 2) challenges and development needs, and 3) means and methods for the front end activities of software development. First, the study discloses the difference and similarities between the concepts of the front end of innovation and requirements engineering, and proposes a new framework for managing the front end of the software innovation process, bringing business and innovation perspectives into software development. Furthermore, the study discloses managerial perceptions of the similarities and differences in the concept of the front end of innovation between the software industry and the traditional industrial sector. Second, the study highlights the challenges and development needs in the front end phase of software development, especially challenges in communication, such as linguistic problems, ineffective communication channels, a communication gap between users/customers and software developers, and participation of multiple persons in software development. Third, the study proposes new group methods for improving the front end activities of software development, especially customer need assessment, and the elicitation of software requirements.

Measurement and Improvement of Wet Paper Web Strength

Various strength properties of paper are measured to tell how well it resists breaks in a paper machine or in printing presses. The most often measured properties are dry tensile strength and dry tear strength. However, in many situations where paper breaks, it is not dry. For example, in web breaks after the wet pressing the dry matter content can be around 45%. Thus, wet-web strength is often a more critical paper property than dry strength. Both wet and dry strength properties of the samples were measured with a L&W tensile tester. Originally this device was not designed for the measurement of the wet web tensile strength, thus a new procedure to handle the wet samples was developed. The method was tested with Pine Kraft (never dried). The effect of different strength additives on the wet-web and dry paper tensile strength was studied. The polymers used in this experiment were aqueous solution of a cationic polyamidoamine-epichlorohydrin resin (PAE), cationic hydrophilised polyisocyanate and cationic polyvinylamine (PVAm). From all three used chemicals only Cationic PAE considerably increased the wet web strength. However it was noticed that at constant solids content all chemicals decreased the wet web tensile strength. So, since all chemicals enhanced solid content it can be concluded that they work as drainage aids, not as wet web strength additives. From all chemicals only PVAm increased the dry strength and two other chemicals even decreased the strength. As chemicals were used in strong diluted forms and were injected into the pulp slurry, not on the surface of the papersheets, changes in samples densities did not happen. Also it has to be noted that all these chemicals are mainly used to improve the wet strength after the drying of the web.

The Sottunga-Jurmo shear zone : structure and deformation history of a crustal-scale ductile shear zone in SW Finland

The aim of this study is to gain a better understanding of the structure and the deformation history of a NW-SE trending regional, crustal-scale shear structure in the Åland archipelago, SW Finland, called the Sottunga-Jurmo shear zone (SJSZ). Approaches involving e.g. structural geology, geochronology, geochemistry and metamorphic petrology were utilised in order to reconstruct the overall deformation history of the study area. The study therefore describes several features of the shear zone including structures, kinematics and lithologies within the study area, the ages of the different deformation phases (ductile to brittle) within the shear zone, as well as some geothermobarometric results. The results indicate that the SJSZ outlines a major crustal discontinuity between the extensively migmatized rocks NE of the shear zone and the unmigmatised, amphibolite facies rocks SW of the zone. The main SJSZ shows overall dextral lateral kinematics with a SW-side up vertical component and deformation partitioning into pure shear and simple shear dominated deformation styles that was intensified toward later stages of the deformation history. The deformation partitioning resulted in complex folding and refolding against the SW margin of the SJSZ, including conical and sheath folds, and in a formation of several minor strike-slip shear zones both parallel and conjugate to the main SJSZ in order to accommodate the regional transpressive stresses. Different deformation phases within the study area were dated by SIMS (zircon U-Pb), ID-TIMS (titanite U-Pb) and 40Ar/39Ar (pseudotachylyte wholerock) methods. The first deformation phase within the ca. 1.88 Ga rocks of the study area is dated at ca. 1.85 Ga, and the shear zone was reactivated twice within the ductile regime (at ca. 1.83 Ga and 1.79 Ga), during which the strain was successively increasingly partitioned into the main SJSZ and the minor shear zones. The age determinations suggest that the orogenic processes within the study area did not occur in a temporal continuum; instead, the metamorphic zircon rims and titanites show distinct, 10-20 Ma long breaks in deformation between phases of active deformation. The results of this study further imply slow cooling of the rocks through 600-700ºC so that at 1.79 Ga, 2 the temperature was still at least 600ºC. The highest recorded metamorphic pressures are 6.4-7.1 kbar. At the late stages or soon after the last ductile phase (ca. 1.79 Ga), relatively high-T mylonites and ultramylonites were formed, witnessing extreme deformation partitioning and high strain rates. After the rocks reached lower amphibolite facies to amphibolite-greenschist facies transitional conditions (ca. 500-550ºC), they cooled rapidly, probably due to crustal uplift and exhumation. The shear zone was reactivated at least once within the semi-brittle to brittle regime between ca. 1.79 Ga and 1.58 Ga, as evidenced by cataclasites and pseudotachylytes. In summary, the results of this study suggest that the Sottunga-Jurmo shear zone (and the South Finland shear zone) defines a major crustal discontinuity, and played a central role in accommodating the regional stresses during and after the Svecofennian orogeny.

Kroppen som bärare av hälsa och lidande

The overall aim of this study is to seek new knowledge and deeper understanding of the body as a phenomenon from a caring science point of view. By means of a hermeneutic definition, the body is studied on a contextual as well as an ontological level in order to create a deeper understanding for human beings in relation to health and suffering. The study focuses of the body as a perspective of human beings. It is important for the knowledge growth in caring science to create a deeper understanding for the body, thus making it possible to understand patients in nursing care. The overall methodology is a hermeneutic definition which covers a contextual and an ontological concept definition. In the three empirical studies, Giorgi’s phenomenological method was used. The first empirical study comprises twelve students’ statements about experiences of their body in different situatons in life. The second study is composed of interviews with fifteen patients who had been afflicted by illness and been subjected to surgical treatment. In the third empirical study, ten patients who had been cared for in perioperative nursing care were interviewed. In the data analysis, the essential meaning of the body as a phenomenon is described, along with its variations and nuances. In the ontological determination of the body, an etymologic and semantic analysis is carried out, as well as a qualitative analysis of ideas, where the material is comprised of chosen texts on the body from different perspectives. In the concluding analysis the results were synthesized. The result of the first empirical study shows that a body is expressive and manifests movement in its striving for dignity. The body harbours language and inherent powers to cope with the unexpected, as well as feelings of anxiety, fear and powerlessness. The second study shows that the body is experienced as mysterious when it is afflicted by illness, but it is also found mysterious as an opponent to man and life. A battle is fought between the illness that breaks down the body, and human beings fighting to keep their unity whole. The body appears as a prison and a host for a threatening illness. The body bears a feeling of powerlessness when it is changed by illness and suffering. In a care and treatment context, the body is objectified by the patient and the caregiver. It is the illness that forces the patient to sacrifice parts of the body in order to once again become whole in the unity. The third study shows that the patient in a perioperative nursing context delivers him-/herself over to the hands of the caregiver, who defends and protects body and life. The patient experiences a sense of well-being when the caretaker receives him/her and protects the body from dangers. Suffering is alleviated when the patients are allowed to talk about what has happened in their body. The result of the semantic analysis shows that the body as a concept is described as bending around the human soul and spirit. Linguistically, dimensions like corporeal, shape, totality, unity and mortal clay, are described. Different ideas about the body described it as: a material animate part of man, active and demanding, something that perceives its surrounding world and as a subjective body of senses, thoughts and language. Ideas about the body also describe it as a biological and physiological, living organism, submitted to the laws of nature, a passive apparatus and a socially constructed gender. The results of the different studies were synthesized and reflected against a caring science perspective. The research has created a deeper understanding for the body as a material abode and as an entity of body, soul and spirit.

Travels in various countries of Europe, Asia and Africa : Part the third : Scandinavia : Section the second : by Edward Daniel Clarke.

Digital reproduction, The National Library of Finland, Centre for Preservation and Digitisation, Mikkeli

Travels in various countries of Europe, Asia and Africa : Part the third : Scandinavia : Section the first : by Edward Daniel Clarke.

Digital reproduction, The National Library of Finland, Centre for Preservation and Digitisation, Mikkeli

Pirilänkosken Natura 2000 -alueen hoito- ja käyttösuunnitelma

Pirilänkosken Natura-alue (FI0200045) sijaitsee Satakunnassa Harjavallan kaupungin ja Nakkilan kunnan alueella Harjavallan keskustan välittömässä läheisyydessä. Se muodostuu Kokemäenjoessa sijaitsevan Harjavallan voimalaitoksen alapuolisesta suvannosta ja noin kuuden kilometrin jokiosuudesta sekä sen reunoilla olevista jyrkkään eroosiotörmään syntyneistä rantalehdoista. Alue kuuluu Euroopan yhteisön Natura 2000 – suojelualueverkostoon luontodirektiivin mukaisena SCI-alueena (Sites of Community Importance) Natura-alueen pinta-ala on 147 ha, josta noin 60 prosenttia on vettä. Alueen luontoarvot liittyvät jokiluonnon lisäksi maamme edustavimpiin kuuluviin lehtoihin, jotka ovat säilyneet melko luonnontilaisina. Luontoarvojen säilymisen uhkatekijöinä ovat mm lehtojen heinittyminen ja taimettuminen Jokiluonnon tilaan on aikanaan vaikuttanut Harjavallan voimalaitos ja muut Kokemäenjoen säännöstelyyn vaikuttaneet tekijät Alueella on tärkeä merkitys paikallisena virkistyskäyttö- ja opetuskohteena. Pirilänkosken rannalla kulkee noin viisi kilometriä pitkä Paratiisin-Pirilänkosken luontopolku Alueella harrastetaan aktiivisesti myös kalastusta. Osana Varsinais-Suomen elinkeino-, liikenne- ja ympäristökeskuksen (ELY) johtamaa ja EU:n LIFE -luontorahaston rahoittamaa Kokemäenjoki-LIFE -hanketta alueelle laadittiin hoito- ja käyttösuunnitelma, jonka tavoitteena on ohjata alueen hoitoa ja käyttöä luontoarvojen turvaamiseksi. Suunnitelma tehtiin Varsinais-Suomen ELYn ohjauksessa, ja suunnittelua varten perustettiin työryhmä, joka koottiin eri viranomaistahojen ja käyttäjäryhmien edustajista (alueella kalastavat ja retkeilevät) sekä maanomistajista. Työryhmän tavoitteena oli tunnistaa alueen suojeluun ja käyttöön liittyvät mahdolliset ongelmat ja ristiriidat, ratkaista ja sovittaa niitä. Tämän hoito- ja käyttösuunnitelman aikajänne on 15 vuotta. Suunnitelman tavoitteena on ohjata alueen hoitoa ja käyttöä niin, että alueen luontoarvot turvataan.

The pH-dependent phase distribution of wood pitch components in papermaking processes

Wood contains only a very small amount of lipophilic extractives, commonly known as wood pitch. The pitch is known to cause severe problems in papermaking processes. The amount of pitch in process waters can be decreased by seasoning of the raw material prior to pulping, pulp washing, removal of pitch by flotation, adsorption of pitch onto various mineral surfaces, and retention of pitch to the fibre material by cationic polymers. The aim of this study was to determine the influence of pH on some of the methods used for pitch control. Experiments were performed using laboratory-made wood pitch emulsions with varying pH, salt concentration, hemicellulose concentration and pitch composition. These emulsions were used to study the phase distribution of resin and fatty acids, the colloidal stability of pitch with and without steric stabilisation by galactoglucomannans, and the interactions between wood pitch and mineral particles. Purification of unbleached and peroxidebleached mill process water was performed by froth flotation in combination with a foaming agent. The distribution of resin and fatty acids (RFAs) between colloidal pitch droplets and the water phase was very dependent on pH. At pH 3, almost all of the RFAs were attached to the pitch droplets, while increasing the pH led to increasing concentration of dissolved RFAs in the water phase. The presence of salt shifted the release of RFAs towards higher pH, while lower ratio of neutral pitch in the emulsion resulted in release of RFAs at lower pH. It was also seen that the dissolution and adsorption of RFAs at sudden pHchanges takes place very quickly. Colloidal pitch was more stable against electrolyte-induced aggregation at higher pH, due to its higher anionic charge. The concentration of cationic polymers needed to aggregate colloidal pitch also increased with increasing pH. The surface characteristics of solid particles, such as amount of charged groups, were very important for understanding their interactions with colloidal wood pitch. Water-soluble galactoglucomannans stabilised the colloidal pitch sterically against aggregation, but could not completely prevent interactions between wood pitch and hydrophilic particles. Froth flotation of unbleached and peroxidebleached process water showed that the pitch could be removed more effectively and selectively at low pH, compared to at neutral pH. The pitch was removed more effectively, using lower concentrations of foaming agent, from peroxide-bleached water than from unbleached water. The results show that pH has a major impact on various pulping and papermaking processes. It determines the anionic charge of the colloidal pitch and the solubility of certain pitch components. Because of this, the pH influences the effectiveness of pitch retention and removal of pitch. The results indicate that pitch problems could be diminished by acknowledging the importance of pH in various papermaking processes.

Pelätty, vihattu vai rakastettu tietotekniikka elinikäisessä työ- ja oppimisympäristössä. Tietotekniikan merkitys työn ja työympäristön hallinnassa

Tämän tutkimuksen tavoitteena oli selvittää niitä tekijöitä, jotka vaikuttavat työn ja työympäristön hallintaan tietoteknisessä työssä: työn hallinta, työn nopeampi tekeminen, työn sisältö, työn tulokset ja vaikutusmahdollisuudet. Näitä tekijöitä tutkittiin suhteessa työntekijän tietoteknisiin taitoihin ja työntekijän ikään. Tutkimuksen viitekehyksenä ovat maailmanlaajuisesti tapahtuneet ja edelleen tapahtuvat muutokset työelämässä sekä tietoyhteiskunnan kehittyminen. Aikaisemmat tutkimukset nostavat esiin yleisiä kehityslinjoja, mutta myös ristiriitaisia tuloksia. Siksi tässä tutkimuksessa nämä kysymykset purettiin hyvin konkreettisiksi, työyhteisössä havaituiksi osakysymyksiksi ja suhteutettiin vastaajia koskeviin taustatietoihin. Tutkimus kohdistui eri ikäisiin työntekijöihin, joista osa on kokenut tietotekniikan tulon työelämään ja sen käytön lisääntymisen useamman viime vuosikymmenen aikana. Tänä aikana yhteiskunnassa on tapahtunut yleisemminkin merkittävää kehitystä, joka on nostanut esille laajemminkin tarpeet tietoteknisen osaamisen ja taitojen kehittymiseen ja elinikäiseen oppimiseen. Tämä tutkimus ajoittuu noihin vuosikymmeniin ja vaikka se kohdistuukin yhden organisaation sisällä koettuihin vaikutuksiin, niin on selvää, että yleisempikin yhteiskunnallinen kehitys heijastuu tuloksiin. Tämä tutkimus on tehty kvantitatiivisella tutkimusotteella. Tutkimusaineisto on kerätty sähköisellä lomakkeella. Tämän tutkimuksen mukaan tietoteknisiltä taidoiltaan hyvät kokivat hallitsevansa työnsä ja työympäristönsä paremmin kuin tietoteknisiltä taidoiltaan heikot. He kokivat myös tietotekniikan helpottaneen työtä, mahdollisuudet itsensä kehittämiseen lisääntyneen ja työn itsenäisyyden lisääntyneen. Tietoteknisiltä taidoiltaan heikot puolestaan kokivat työn ja työnympäristön hallinnan vähentyneen, työn vaativuuden lisääntyneen, työn tauotuksen vähentyneen, sosiaalisen ympäristön heikentyneen, työn henkisen rasittavuuden lisääntyneen, oman ammattialan arvostuksen vähentyneen ja työhön liittyvien vaikutusmahdollisuuksien vähentyneen. Tulosten perusteella kaikki työntekijät kokivat työn tulosten parantuneen tietotekniikan avulla, mutta toisaalta kokivat työn sisällön köyhtyneen tietotekniikan vuoksi – varsinkin iäkkäät työntekijät kokivat näin. Tutkimuksessa selvitettiin myös työn ja työympäristön hallintaa tukevia ja uhkaavia tekijöitä. Tämän tutkimuksen mukaan pelot tietotekniikkaa kohtaan ja puutteellinen tuki tietoteknisissä ongelmissa uhkaavat työn ja työympäristön hallintaa.

Paimionlahden Natura 2000 -alueen hoito- ja käyttösuunnitelma

Paimionlahden Natura-alue (FI0200036) sijaitsee Paimion kaupungissa pitkän ja kapean lahden perukassa Paimionjoen suulla. Paimionlahti kuuluu Euroopan yhteisön Natura 2000 -verkostoon EU:n ns. lintudirektiivin perusteella eli linnustonsuojelualueena (SPA = Special Protection Area). Natura-alue kattaa lähes kokonaisuudessaan Paimionlahden perän lintuvesiensuojeluohjelmaan kuuluvan alan. Natura-alue on pinta-alaltaan 221 ha, josta maapinta-alaa on 115 ha. Paimionlahden tärkeimmät luonnonsuojelulliset arvot perustuvat pesivään ja levähtävään linnustoon sekä tiukasti suojeltavan meriuposkuoriaisen esiintymiseen. Alue kuuluu linnuston perusteella kansalliseen ja eurooppalaiseen suojelualueverkostoon. Alueen luontoarvojen säilymisen haasteena on Paimionjoesta tuleva ravinne- ja kiintoainekuormitus, vesistön rehevöityminen, vesistörakentaminen, ranta- ja vesialueiden umpeenkasvu ja vieraslajit. Alueella on myös tärkeä merkitys paikallisten ihmisten virkistyskäyttöalueena. Osana Varsinais-Suomen elinkeino-, liikenne- ja ympäristökeskuksen (ELY-keskus) vastuualueen johtamaa ja Euroopan maatalouden kehittämisen maatalousrahaston tukemaa vesien ja luonnonhoidon alueellinen ja paikallinen toteuttaminen Lounais-Suomen vesistö- alueilla -hanketta (VELHO) alueelle laadittiin hoito- ja käyttösuunnitelma, jonka tavoitteena on ohjata alueen hoitoa ja käyttöä luontoarvojen turvaamiseksi. Suunnitelma tehtiin Varsinais-Suomen ELY-keskuksen ohjauksessa. Suunnittelua varten perustettiin suunnitteluryhmä, joka koottiin eri viranomaistahojen ja käyttäjäryhmien edustajista sekä maanomistajista. Suunnitteluryhmän tavoitteena oli tunnistaa alueen suojeluun ja käyttöön liittyvät mahdolliset ongelmat ja ristiriidat, ratkaista ja sovittaa niitä. Tämän hoito- ja käyttösuunnitelman aikajänne on 15 vuotta. Suunnitelman tavoitteena on ohjata alueen hoitoa ja käyttöä niin, että alueen luontoarvot turvataan.

Viurilanlahden Natura 2000 -alueen hoito- ja käyttösuunnitelma

Viurilanlahden Natura-alue (FI0200027) sijaitsee Salossa Halikonlahden pohjoisosassa, ja se muodostuu kolmesta toisistaan erillään olevasta osasta: Viurilanlahdesta, Jokiniemenlahdesta ja siihen liittyvästä Rauvolanselästä itärantoineen sekä Kaijanlammesta. Natura-alueeseen sisältyy ranta- ja vesialueiden lisäksi Salon Veden keskusjätevedenpuhdistamon alueita ja jonkin verran peltoja. Alue kuuluu Euroopan yhteisön Natura 2000 -verkostoon lintudirektiivin perusteella eli se on linnustonsuojelualue eli SPA-alue (Special Protection Area). Viurilanlahden Natura-alue on osittain päällekkäin Vaisakon Natura-alueen (FI0200125) kanssa, joka on luontodirektiivin mukainen SCI-alue (Sites of Community Importance). Natura-alueen pinta-ala on 628 ha, josta vesialaa on noin 400 ha. Viurilanlahden tärkeimmät luonnonsuojelulliset arvot perustuvat alueella pesivään ja levähtävään linnustoon. Luontoarvojen säilymisen haasteina ovat vesistökuormitus, rantojen ja vesialueen umpeenkasvu ja mataloituminen sekä vieraslajit. Viurilanlahdella on tärkeä merkitys myös virkistyskäyttöalueena. Osana Varsinais-Suomen elinkeino-, liikenne- ja ympäristökeskuksen (ELY-keskus) vastuualueen johtamaa ja Euroopan maatalouden kehittämisen maatalousrahaston tukemaa vesien ja luonnonhoidon alueellinen ja paikallinen toteuttaminen Lounais-Suomen vesistöalueilla -hanketta (VELHO) alueelle laadittiin hoito- ja käyttösuunnitelma, jonka tavoitteena on ohjata alueen hoitoa ja käyttöä luontoarvojen turvaamiseksi. Suunnitelma tehtiin Varsinais-Suomen ELY-keskuksen ohjauksessa. Suunnittelua varten perustettiin suunnitteluryhmä, joka koottiin eri viranomaistahojen ja käyttäjäryhmien edustajista sekä maanomistajista. Suunnitteluryhmän tavoitteena oli tunnistaa alueen suojeluun ja käyttöön liittyvät mahdolliset ongelmat ja ristiriidat, ratkaista ja sovittaa niitä. Tämän hoito- ja käyttösuunnitelman aikajänne on 15 vuotta. Suunnitelman tavoitteena on ohjata alueen hoitoa ja käyttöä niin, että alueen luontoarvot turvataan.

Artificial Ribonucleases: Oligonucleotides Conjugated with Metal Ion Chelates of Azacrowns

Ribonucleic acid (RNA) has many biological roles in cells: it takes part in coding, decoding, regulating and expressing of the genes as well as has the capacity to work as a catalyst in numerous biological reactions. These qualities make RNA an interesting object of various studies. Development of useful tools with which to investigate RNA is a prerequisite for more advanced research in the field. One of such tools may be the artificial ribonucleases, which are oligonucleotide conjugates that sequence-selectively cleave complementary RNA targets. This thesis is aimed at developing new efficient metal-ion-based artificial ribonucleases. On one hand, to solve the challenges related to solid-supported synthesis of metal-ion-binding conjugates of oligonucleotides, and on the other hand, to quantify their ability to cleave various oligoribonucleotide targets in a pre-designed sequence selective manner. In this study several artificial ribonucleases based on cleaving capability of metal ion chelated azacrown moiety were designed and synthesized successfully. The most efficient ribonucleases were the ones with two azacrowns close to the 3´- end of the oligonucleotide strand. Different transition metal ions were introduced into the azacrown moiety and among them, the Zn2+ ion was found to be better than Cu2+ and Ni2+ ions.