Estudio reológico de copolímeros amorfos de PET

Proyecto de investigación realizado a partir de una estancia en la Universidad del País Vasco entre gener i març del 2007. Se han estudiado dos series de copoliméros amorfos de poli(etilen-co-1,4-ciclohexanodimetilentereftalato) (PECT) conteniendo 25 y 30% de unidades de 1,4-ciclohexanodimetanol (CHDM) y pequeñas cantidades del agente ramificante pentaeritritol (PER). El nivel de ramificación se ha estimado mediante el análisis de la desviación positiva de la ley de la viscosidad newtoniana. La ramificación también produce una mejora del la elasticidad del fundido la cual es desable para el principal proceso de transformación de estos copolíesteres amorfos derivados del PET: extrusión calandrado. Los ensayos de extrusión capilar realizados a 180 ºC producen cristalización inducida por el flujo en los PECTcon un contenido en CHDM del 25%. La cristalización aumenta con la cantidad de PER añadida, hecho que se explica como el efecto favorable de la ramificación para aumentar la velocidad elangonacional a la entrada del capilar. Los copoliésteres lineales y ramificados de PECT con un contenido de CHDM del 30% no cristalizaron.

Valor de la PET FDG en la estadificación mediastínica del carcinoma pulmonar no microcítico

La tomografia per emissió de positrons amb 18fluorodesoxiglucosa (PET-FDG) s'ha implantat com a tècnica d'estudi i estadificació d'elecció als pacients amb diagnòstic de carcinoma pulmonar no microcrític (CPNM) susceptibles de tractament quirúrgic. Mètodes: Per valorar l'eficàcia de la PET FDG realitzem un estudi retrospectiu incloent els pacients intervinguts al nostre centre entre setembre del 2007 i abril del 2009. Resultats: La PET-FDG va mostrar una sensibilitat i especificitat de 56% i 75% respectivament. Conclusions: El rendiment diagnòstic de la PET-FDG a la població estudiada ha estat baix. Aquest resultat pot estar condicionat per una mostra poc representativa.

Evalución con pet/ct 11c-colina de recidivas bioquímicas ocultas de carcinoma de próstata.

Introducció. Material y mètodes. El nostre objectiu és valorar la utilitat del PET/CT 11C-Colina a la recidiva bioquímica oculta del carcinoma de pròstata. Es van estudiar retrospectivament 58 pacients amb aument de PSA posttractament. La interpretació de les imatges fou visual. Resultats: El PET/CT fou positiu en 39 pacients (67%) (PSA mitjà: 11.7). Es van dividir els malats en 4 grups segons el valor del PSA (sensibilitat%): &1ng/ml:50% 1ng/ml -3ng/ml:60% 3ng/ml-5ng/ml:86% & a 5ng/ml:91% . Conclusió: La PET/CT 11C-Colina mostra una alta capacitat de detecció per valors de PSA superiors a 5ng/ml i pot ser útil en valors superiors a 1ng/ml.

Impacto del estudio pet-tc en la planificación de radioterapia en pacientes con cáncer de pulmón

Aquest estudi té com a objectiu avaluar l’impacte de la PET-TC amb 18F-FDG en la planificació radioteràpica (PRT) en pacients amb carcinoma pulmonar, per la possible modificació en l’estadificació tumoral. Es van estudiar 33 pacients amb carcinoma de pulmó als que es va practicar una TC diagnòstica i una PET-TC d’estadificació i PRT. Es va comparar l’estadificació mitjançant ambdues tècniques i es van comptabilitzar els pacients exclosos per RT curativa. Finalment, la 18F-FDG PET-TC va permetre una millor estadificació dels pacients candidats a RT, excloent aquells no candidats per metàstasis no sospitades o per disminució de l’estadiatge.

Síntesi de la molècula ML-10 i del seu precursor immediat per poder obtenir 18F-ML-10, d'ús en tècniques PET

El 18F-ML-10 és un radiofàrmac utilitzat com a traçador de cèl·lules apoptòtiques mitjançant la tècnica del PET (Positron Emission Tomography). En el present treball de recerca s’ha dut a terme la síntesi de dos precursors del 18F-ML-10, i del producte final no marcat isotòpicament, el ML-10. S’ha plantejat una síntesi convergent per l’obtenció del compost final 3, partint del malonat de di-tert-butil i l’1,5-pentandiol. Tant el precursor tosilat 1 com el mesilat 2 s’han sintetitzat en 3 etapes amb un 29% i un 36% de rendiment, respectivament. El compost 3, utilitzat com a referència en la síntesi del 18F-ML-10, s’ha sintetitzat en 2 etapes a partir del precursor 2 amb un rendiment total de la síntesi del 31%. El procés de radiomarcació s’està portant a terme a l’Institut d’Alta Tecnologia – Parc de Recerca Biomèdica de Barcelona (IAT–PRBB), on posteriorment es faran estudis neurològics i oncològics on el seguiment de processos apoptòtics és clau.

Characterization and simulation of a CdTe detector for use in PET

The Voxel Imaging PET (VIP) Path nder project got the 4 year European Research Council FP7 grant in 2010 to prove the feasibility of using CdTe detectors in a novel conceptual design of PET scanner. The work presented in this thesis is a part of the VIP project and consists of, on the one hand, the characterization of a CdTe detector in terms of energy resolution and coincidence time resolution and, on the other hand, the simulation of the setup with the single detector in order to extend the results to the full PET scanner. An energy resolution of 0.98% at 511 keV with a bias voltage of 1000 V/mm has been measured at low temperature T=-8 ºC. The coincidence time distribution of two twin detectors has been found to be as low as 6 ns FWHM for events with energies above 500 keV under the same temperature and bias conditions. The measured energy and time resolution values are compatible with similar ndings available in the literature and prove the excellent potential of CdTe for PET applications. This results have been presented in form of a poster contribution at the IEEE NSS/MIC & RTSD 2011 conference in October 2011 in Valencia and at the iWoRID 2012 conference in July 2012 in Coimbra, Portugal. They have been also submitted for publication to "Journal of Instrumentation (JINST)" in September 2012.

Simulation methods with extended stability for stiff biochemical kinetics

Background: With increasing computer power, simulating the dynamics of complex systems in chemistry and biology is becoming increasingly routine. The modelling of individual reactions in (bio)chemical systems involves a large number of random events that can be simulated by the stochastic simulation algorithm (SSA). The key quantity is the step size, or waiting time, τ, whose value inversely depends on the size of the propensities of the different channel reactions and which needs to be re-evaluated after every firing event. Such a discrete event simulation may be extremely expensive, in particular for stiff systems where τ can be very short due to the fast kinetics of some of the channel reactions. Several alternative methods have been put forward to increase the integration step size. The so-called τ-leap approach takes a larger step size by allowing all the reactions to fire, from a Poisson or Binomial distribution, within that step. Although the expected value for the different species in the reactive system is maintained with respect to more precise methods, the variance at steady state can suffer from large errors as τ grows. Results: In this paper we extend Poisson τ-leap methods to a general class of Runge-Kutta (RK) τ-leap methods. We show that with the proper selection of the coefficients, the variance of the extended τ-leap can be well-behaved, leading to significantly larger step sizes.Conclusions: The benefit of adapting the extended method to the use of RK frameworks is clear in terms of speed of calculation, as the number of evaluations of the Poisson distribution is still one set per time step, as in the original τ-leap method. The approach paves the way to explore new multiscale methods to simulate (bio)chemical systems.

Statistical analysis of maximum likelihood estimator images of human brain FDG PET studies

The work presented evaluates the statistical characteristics of regional bias and expected error in reconstructions of real positron emission tomography (PET) data of human brain fluoro-deoxiglucose (FDG) studies carried out by the maximum likelihood estimator (MLE) method with a robust stopping rule, and compares them with the results of filtered backprojection (FBP) reconstructions and with the method of sieves. The task of evaluating radioisotope uptake in regions-of-interest (ROIs) is investigated. An assessment of bias and variance in uptake measurements is carried out with simulated data. Then, by using three different transition matrices with different degrees of accuracy and a components of variance model for statistical analysis, it is shown that the characteristics obtained from real human FDG brain data are consistent with the results of the simulation studies.

Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus Capsid

Hepatitis A virus (HAV), the prototype of genus Hepatovirus, has several unique biological characteristics that distinguish it from other members of the Picornaviridae family. Among these, the need for an intact eIF4G factor for the initiation of translation results in an inability to shut down host protein synthesis by a mechanism similar to that of other picornaviruses. Consequently, HAV must inefficiently compete for the cellular translational machinery and this may explain its poor growth in cell culture. In this context of virus/cell competition, HAV has strategically adopted a naturally highly deoptimized codon usage with respect to that of its cellular host. With the aim to optimize its codon usage the virus was adapted to propagate in cells with impaired protein synthesis, in order to make tRNA pools more available for the virus. A significant loss of fitness was the immediate response to the adaptation process that was, however, later on recovered and more associated to a re-deoptimization rather than to an optimization of the codon usage specifically in the capsid coding region. These results exclude translation selection and instead suggest fine-tuning translation kinetics selection as the underlying mechanism of the codon usage bias in this specific genome region. Additionally, the results provide clear evidence of the Red Queen dynamics of evolution since the virus has very much evolved to re-adapt its codon usage to the environmental cellular changing conditions in order to recover the original fitness.

Comment on "Kinetics of spinodal decomposition in the ising model with vacancy diffusion"

In a recent paper [Phys. Rev. B 50, 3477 (1994)], P. Fratzl and O. Penrose present the results of the Monte Carlo simulation of the spinodal decomposition problem (phase separation) using the vacancy dynamics mechanism. They observe that the t1/3 growth regime is reached faster than when using the standard Kawasaki dynamics. In this Comment we provide a simple explanation for the phenomenon based on the role of interface diffusion, which they claim is irrelevant for the observed behavior.

Kinetics of martensitic transitions in Cu-Al-Mn under thermal cycling: Analysis at multiple length scales

In this paper we study the evolution of the kinetic features of the martensitic transition in a Cu-Al-Mn single crystal under thermal cycling. The use of several experimental techniques including optical microscopy, calorimetry, and acoustic emission, has enabled us to perform an analysis at multiple scales. In particular, we have focused on the analysis of avalanche events (associated with the nucleation and growth of martensitic domains), which occur during the transition. There are significant differences between the kinetics at large and small length scales. On the one hand, at small length scales, small avalanche events tend to sum to give new larger events in subsequent loops. On the other hand, at large length scales the large domains tend to split into smaller ones on thermal cycling. We suggest that such different behavior is the necessary ingredient that leads the system to the final critical state corresponding to a power-law distribution of avalanches.