Emergence of novel domains in proteins

Proteins are composed of a combination of discrete, well-defined, sequence domains, associated with specific functions that have arisen at different times during evolutionary history. The emergence of novel domains is related to protein functional diversification and adaptation. But currently little is known about how novel domains arise and how they subsequently evolve. To gain insights into the impact of recently emerged domains in protein evolution we have identified all human young protein domains that have emerged in approximately the past 550 million years. We have classified them into vertebrate-specific and mammalian-specific groups, and compared them to older domains. We have found 426 different annotated young domains, totalling 995 domain occurrences, which represent about 12.3% of all human domains. We have observed that 61.3% of them arose in newly formed genes, while the remaining 38.7% are found combined with older domains, and have very likely emerged in the context of a previously existing protein. Young domains are preferentially located at the N-terminus of the protein, indicating that, at least in vertebrates, novel functional sequences often emerge there. Furthermore, young domains show significantly higher non-synonymous to synonymous substitution rates than older domains using human and mouse orthologous sequence comparisons. This is also true when we compare young and old domains located in the same protein, suggesting that recently arisen domains tend to evolve in a less constrained manner than older domains. We conclude that proteins tend to gain domains over time, becoming progressively longer. We show that many proteins are made of domains of different age, and that the fastest evolving parts correspond to the domains that have been acquired more recently.

La subtitulación amateur: la subtitulación amateur de series online: el caso de Lost

Debido a su gran repercusión y rápido ritmo de expansión, resulta obvio que la subtitulación amateur se configura como uno de los fenómenos más interesantes y novedosos de los estudios teóricos y prácticos de la investigación traductológica. Por este motivo, el objetivo principal del presente trabajo es el de conocer y estudiar más en profundidad dicho fenómeno, así como analizar la calidad de estos subtítulos con relación a los profesionales a través de un análisis comparativo de materiales reales de la serie norteamericana Lost. Por otro lado, y a la vista de las conclusiones, también se reflexiona acerca del estado actual de la subtitulación interlingüística, así como de la viabilidad de llevar a cabo una modernización de la disciplina mediante el establecimiento, renovación y diversificación de nuevas y existentes modalidades, junto con las repercusiones académicas, sociológicas y profesionales que ello acarrearía.

Viticulture under climate change : understanding vulnerability and adaptive capacity of wineries and growers. A case study in El Penedès region, Catalonia

Climate change may pose challenges and opportunities to viticulture, and much research has focused in studying the likely impacts on grapes and wine production in different regions worldwide. This study assesses the vulnerability and adaptive capacity of the viticulture sector under changing climate conditions, based on a case study in El Penedès region, Catalonia. Farm assets, livelihood strategies, farmer-market interactions and climate changes perceptions are analysed through semi-structured interviews with different types of wineries and growers. Both types of actors are equally exposed to biophysical stressors but unevenly affected by socioeconomic changes. While wineries are vulnerable because of the current economic crisis and the lack of diversification of their work, which may affect their income or production, growers are mainly affected by the low prices of their products and the lack of fix contracts. These socioeconomic stressors strongly condition their capacity to adapt to climate change, meaning that growers prioritize their immediate income problems, rather than future socioeconomic or climate threats. Therefore, growers undertake reactive adaptation to climate changing conditions, mainly based on ancient knowledge, whilst wineries combine both reactive and anticipatory adaptation practices. These circumstances should be addressed in order to allow better anticipatory adaptation to be implemented, thus avoiding future climate threats.

Oral findings in Midline Syndrome: a case report and literature review

We describe a female patient with a midline syndrome. The patient presents agenesis of the corpus callosum, encephalocele, iris coloboma, hypertelorism, submucosal cleft palate and dental anomalies. Despite being very characteristic, her phenotypical traits do not coincide exactly with those reported to date in the literature. The karyotype and the molecular cytogenetic study do not show mutations. We identify the presence of dental anomalies in the mother and other family members, not being identified MSX1 and PAX9 mutations that could the related with their etiology. Despite the fact that dental agenesis has been related to a large number of other malformation syndromes and congenital conditions, dental anomalies have only rarely been mentioned when reporting midline syndromes. These dental phenotypical traits, present in the patient and her family, could be considered part of the midline syndrome in carriers as well as in the patients.

The effect of recombination in Aeromonas

Although several approaches have been attempted, the estimation of recombination frequencies in natural populations ofbacteria remains challenging. Previous studies have demonstrated awide variety of situations among bacterial species, ranging from theclonal diversification of Salmonella or Escherichia coli, which aremainly due to mutation, to the frequent recombination found inNeisseria gonorrhoeae or Helicobacter pylori. Most of the populationstudies done with bacterial species suggest that recombination occursin nature but that it is infrequent compared to mutation. Consequently,bacterial populations consist largely of independent clonal lineages.Our research suggests little or null influence of recombination in thegenetic structure of "Aeromonas hydrophila Species Complex", despite the presence of some strains with recombinant gene fragments.

La Costa Brava ante los nuevos retos del turismo

The first section of this paper summarises the most relevant charateristics of the contemporary tourist model, also called postfordist or postmodernist. In the second part the traditional tourist model developed in the Costa Brava in the past decades, is reviewed. Emphasising the saturation of tourist facilities on the coast line, expansive urban growth, thanks to a tolerant administration, poor complementary supply and concentrated demand in few markets and the proximity of Barcelona conurbation, stressed by second homes. In the third section, some strategies developed in recent years to readapt the Costa Brava to the new tendencies in tourism, are presented. Incorporation of the inland to the tourist product, new planning policics, lessening urban densities and height, and a change in mind in favour of protected natural areas, diversification of demand with new markets, specially form Eastern Europe (although this might be considered as a continuation ofthe traditional tourist model) and the emergence of local strategies oriented towards the creation of new tourist products based upon natural and cultural resources

Arqueología de paisajes altimontanos pirenaicos: formas de explotación y usos del medio en época romana en valle del Madriu-Perafita-Claror (Andorra) y en la Sierra del Cadí (Alt Urgell)

long-term cultural history of the Madriu-Perafita-Claror valleys (Andorra) and the Cadí Range (Catalonia) has been investigated thanks to the combination of archaeological surveys and excavation, analysis of written sources, multiproxy alaeoenvironment analysis (pollen, NPP, micro and macro charcoal, sedimentology and geochemistry), and digital technologies such as stereophotogrammetry, multispectral imaging, DGPS and GIS. The project has been designed from a landscape archaeology approach and the study area has been selected due to the suitable setting it provides for a meaningful application of the aforementioned techniques. Consequently, archaeological, historical and palaeoenvironmental data have been all treated as cultural proxies. Their comparison has allowed obtaining not only coherent but also complementary results. The project outcomes show an uninterrupted occupation of these high mountain valleys (2000-2600 m a.s.l.) from the Mesolithic until the present. This human occupation shows strong spatial and chronological variability in human practices ranging from a stable long term group occupation in the Late Neolithic to the diversification of representative practices during the Roman period (metallurgy, pine resin exploitation, charcoal production, pastoralism, etc.). This high diversity of activities leads to complex cultural landscapes in the high Pyrenean areas. The reconstruction of the cultural history at the study areas will allow the development of more sustainable politics for these landscapes management.

Plantas hospedantes de Rhopalosiphum maidis (Fitch) (Homoptera: Aphididae) y su papel en el ciclo biológico del pulgón en Cataluña

Se evaluó el papel de las distintas plantas hospedantes de Rhopalosiphum maidis (Fitch) en el ciclo biológico anual de los dos cariotipos más comunes en Cataluña (2n = 8 y 2n = 10 cromosomas) mediante el seguimiento de poblaciones de pulgones en cereales de invierno y verano y en gramíneas espontáneas. Asimismo se registró la densidad de R. maidis en parcelas comerciales de maíz y se determinó el periodo de colonización mediante la instalación de una trampa de succión. Las gramíneas espontáneas juegan un papel fundamental en el ciclo biológico anual de ambos cariotipos. Los pulgones de cariotipo 2n = 10 pueden vivir sobre cebada durante el otoño, invierno y primavera, y sobre gramíneas adventicias, como Setaria sp. y Echinochloa crus-galli ((L.) P. Beauv.), en verano e inicios de otoño; la superposición del ciclo de estas gramíneas permite a los pulgones con este cariotipo cerrar su ciclo anual en ellas. En el caso de los pulgones de cariotipo 2n = 8, el sorgo es el principal hospedante de verano; la cañota constituye un hospedante básico en primavera y otoño, pudiendo actuar como hospedante en inviernos extremadamente cálidos. El periodo primaveral de colonización del maíz por R. maidis se produjo principalmente en mayo y duró hasta mediados de junio. El número de alados capturados en la trampa de succión, así como el de individuos hallados sobre plantas, fue muy bajo tanto en mayo como en junio. Los resultados obtenidos sugieren que el maíz no juega un papel relevante en el ciclo de R. maidis. Se analizan algunas de las posibles causas de este fenómeno.

Ensayo de preferencia de individuos alados de Rhopalosiphum maidis (Fitch) (Homoptera: Aphididae) sobre siete gramíneas cultivadas

Se evaluó en laboratorio la preferencia de dos poblaciones leridanas de Rhopalosiphum maidis (Fitch) en la colonización de siete gramíneas cultivadas. Una de las poblaciones fue recogida sobre cañota (Sorghum halepense C. (L.) Pers.) y su cariotipo era 2n = 8. Los individuos de la otra población presentaban un cariotipo 2n = 10 y procedían de cebada. Las gramíneas testadas fueron: sorgo, maíz, trigo, trigo duro, cebada, triticale y avena. Los individuos alados de ambas poblaciones colonizaron los siete cereales aunque de distinta manera. El sorgo fue preferentemente colonizado por los pulgones con cariotipo 2n = 8 y el número de ninfas producidas en 48 horas fue mayor que en el resto de las gramíneas testadas. Los pulgones con cariotipo 2n = 10 mostraron preferencia por la cebada. Los alados de ambas poblaciones fueron incapaces de reproducirse sobre las plantas de maíz.

Centrality and investment strategies at the beginning of industrialisation in mid-nineteenth-century Catalonia

We apply social networks analysis to the study of an important database on investment and companies" share in the Catalonia (Spain) of the nineteenth century. In contrast with most of the existing related literature, usually addressing power relationships across administration boards, we focus on the structure of interactions among individual investors and firms. Centrality analysis uncovers interesting roles played by certain economic sectors (e.g. textile and financial). Furthermore, the diverse composition (in terms of economic activity) of communities in the network (subgroups more densely connected internally than with the rest of the network) reveals a high investment diversification, which nicely agrees with a known characteristic of traditional Catalan business strategies.

How Do Aggregate Fluctuations Depend on the Network Structure of the Economy?

[spa] En este artículo, analizamos la volatilidad agregada de una economía estilizada donde los agentes estann conectados en redes. Si hay relaciones estratégicas entre las acciones de los agentes, choques idiosincráticos pueden generar fluctuaciones agregadas. Demonstramos que la volatilidad agregada depende de la estructura de redes de la economía de dos maneras. Por un lado, si hay más conexiones en la economía en su conjunto, la volatilidad agregada es más baja. Por otro lado, si las conexiones están más concentradas, la volatilidad agregada es más alta. Presentamos una aplicación de nuestras predicciones teóricas que utiliza datos de EEUU de conexiones intrasectoriales y de diversificación de las empresas.

How Do Aggregate Fluctuations Depend on the Network Structure of the Economy?

[spa] En este artículo, analizamos la volatilidad agregada de una economía estilizada donde los agentes estann conectados en redes. Si hay relaciones estratégicas entre las acciones de los agentes, choques idiosincráticos pueden generar fluctuaciones agregadas. Demonstramos que la volatilidad agregada depende de la estructura de redes de la economía de dos maneras. Por un lado, si hay más conexiones en la economía en su conjunto, la volatilidad agregada es más baja. Por otro lado, si las conexiones están más concentradas, la volatilidad agregada es más alta. Presentamos una aplicación de nuestras predicciones teóricas que utiliza datos de EEUU de conexiones intrasectoriales y de diversificación de las empresas.

Fiscal sustainability and fiscal shocks in a dollarized and oil-exporting country: Ecuador

This paper investigates the fiscal sustainability of an emerging, dollarized, oil-exporting country: Ecuador. A cointegrated VAR approach is adopted in testing, first, if the intertemporal budget constraint is satisfied in Ecuador and, second, in identifying the permanent and transitory shocks that affect a fiscal policy characterized by inertia and a heavy dependence on oil revenues. Following confirmation that the debt-GDP ratio does not place the Ecuadorian budget under any pressure, we reformulate the model and identify two forces that push the fiscal system out of equilibrium, namely, economic activity and oil revenues implemented in the government budget. We argue that Ecuador needs to recover control of its monetary policy and to promote the diversification of its economy in order that non-oil tax revenues can replace oil revenues as a pushing force. Finally, we calculate quarterly elasticities of tax revenues with respect to Ecuador’s GDP and that of eight Eurozone countries. We illustrate graphically how the Eurozone countries with low positive or high negative elasticities’ levels suffer debt problems after the crisis. This finding emphasizes the pressing need for Ecuador to strengthen the connection between its tax revenues and output, and also suggests that the convergence of these elasticities in the Eurozone might contribute to the success of an eventually future fiscal union.

Integrating quantitative proteomics and metabolomics in a cellular model of diabetic retinopathy

Diabetic retinopathy is the leading cause of visual loss in individuals under the age of 55. Most investigations into the pathogenesis of diabetic retinopathy have been concentrated on the neural retina since this is where clinical lesions are manifested. Recently, however, various abnormalities in the structural and secretory functions of retinal pigment epithelium that are essential for neuroretina survival, have been found in diabetic retinopathy. In this context, here we study the effect of hyperglycemic and hypoxic conditions on the metabolism of a human retinal pigment epithelial cell line (ARPE-19) by integrating quantitative proteomics using tandem mass tagging (TMT), untargeted metabolomics using MS and NMR, and 13C-glucose isotopic labeling for metabolic tracking. We observed a remarkable metabolic diversification under our simulated in vitro hyperglycemic conditions of diabetes, characterized increased flux through polyol pathways and inhibition of the Krebs cycle and oxidative phosphorylation. Importantly, under low oxygen supply RPE cells seem to consume rapidly glycogen storages and stimulate anaerobic glycolysis. Our results therefore pave the way to future scenarios involving new therapeutic strategies addressed to modulating RPE metabolic impairment, with the aim of regulating structural and secretory alterations of RPE. Finally, this study shows the importance of tackling biomedical problems by integrating metabolomic and proteomics results.

Functional and evolutionary analysis of DXL1, a non-essential gene encoding a 1-deoxy-D-xylulose 5-phosphate synthase like protein in Arabidopsis thaliana

The synthesis of 1-deoxy-D-xylulose 5-phosphate (DXP), catalyzed by the enzyme DXP synthase (DXS), represents a key regulatory step of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis. In plants DXS is encoded by small multigene families that can be classified into, at least, three specialized subfamilies. Arabidopsis thaliana contains three genes encoding proteins with similarity to DXS, including the well-known DXS1/CLA1 gene, which clusters within subfamily I. The remaining proteins, initially named DXS2 and DXS3, have not yet been characterized. Here we report the expression and functional analysis of A. thaliana DXS2. Unexpectedly, the expression of DXS2 failed to rescue Escherichia coli and A. thaliana mutants defective in DXS activity. Coherently, we found that DXS activity was negligible in vitro, being renamed as DXL1 following recent nomenclature recommendation. DXL1 is targeted to plastids as DXS1, but shows a distinct expression pattern. The phenotypic analysis of a DXL1 defective mutant revealed that the function of the encoded protein is not essential for growth and development. Evolutionary analyses indicated that DXL1 emerged from DXS1 through a recent duplication apparently specific of the Brassicaceae lineage. Divergent selective constraints would have affected a significant fraction of sites after diversification of the paralogues. Furthermore, amino acids subjected to divergent selection and likely critical for functional divergence through the acquisition of a novel, although not yet known, biochemical function, were identified. Our results provide with the first evidences of functional specialization at both the regulatory and biochemical level within the plant DXS family.