Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus Capsid

Hepatitis A virus (HAV), the prototype of genus Hepatovirus, has several unique biological characteristics that distinguish it from other members of the Picornaviridae family. Among these, the need for an intact eIF4G factor for the initiation of translation results in an inability to shut down host protein synthesis by a mechanism similar to that of other picornaviruses. Consequently, HAV must inefficiently compete for the cellular translational machinery and this may explain its poor growth in cell culture. In this context of virus/cell competition, HAV has strategically adopted a naturally highly deoptimized codon usage with respect to that of its cellular host. With the aim to optimize its codon usage the virus was adapted to propagate in cells with impaired protein synthesis, in order to make tRNA pools more available for the virus. A significant loss of fitness was the immediate response to the adaptation process that was, however, later on recovered and more associated to a re-deoptimization rather than to an optimization of the codon usage specifically in the capsid coding region. These results exclude translation selection and instead suggest fine-tuning translation kinetics selection as the underlying mechanism of the codon usage bias in this specific genome region. Additionally, the results provide clear evidence of the Red Queen dynamics of evolution since the virus has very much evolved to re-adapt its codon usage to the environmental cellular changing conditions in order to recover the original fitness.

Mineralization of the recalcitrant oxalic and oxamic acids by electrochemical advanced oxidation processes using a boron-doped diamond anode

Oxalic and oxamic acids are the ultimate and more persistent by-products of the degradation of N-aromatics by electrochemical advanced oxidation processes (EAOPs). In this paper, the kinetics and oxidative paths of these acids have been studied for several EAOPs using a boron-doped diamond (BDD) anode and a stainless steel or an air-diffusion cathode. Anodic oxidation (AO-BDD) in the presence of Fe2+ (AO-BDD-Fe2+) and under UVA irradiation (AO-BDD-Fe2+-UVA), along with electro-Fenton (EF-BDD), was tested. The oxidation of both acids and their iron complexes on BDD was clarified by cyclic voltammetry. AO-BDD allowed the overall mineralization of oxalic acid, but oxamic acid was removed much more slowly. Each acid underwent a similar decay in AO-BDD-Fe2+ and EFBDD, as expected if its iron complexes were not attacked by hydroxyl radicals in the bulk. The faster and total mineralization of both acids was achieved in AO-BDD-Fe2+-UVA due to the high photoactivity of their Fe(III) complexes that were continuously regenerated by oxidation of their Fe(II) complexes. Oxamic acid always released a larger proportion of NH4 + than NO3- ion, as well as volatile NOx species. Both acids were independently oxidized at the anode in AO-BDD, but in AO-BDD-Fe2+-UVA oxamic acid was more slowlydegraded as its content decreased, without significant effect on oxalic acid decay. The increase in current density enhanced the oxidation power of the latter method, with loss of efficiency. High Fe2+ contents inhibited the oxidation of Fe(II) complexes by the competitive oxidation of Fe2+ to Fe3+. Low current densities and Fe2+ contents are preferable to remove more efficiently these acids by the most potent AO-BDD-Fe2+-UVA method.

Els Qüestionaris com a recurs docent en l'aprenentatge autònom. Resultats d'una prova pilot en un curs de Química bàsica.

En aquest article es presenten uns nous qüestionaris on line dissenyats per millorar la comprensió dels continguts de l"assignatura Química Bàsica II i, alhora, propiciar el treball autònom dels estudiants. En el grup pilot que ha disposat dels qüestionaris, els resultats acadèmics dels estudiants que els han realitzat diverses vegades han estat millors que els dels alumnes que no els han utilitzat amb regularitat. Els resultats acadèmics del grup pilot també ha estat millor que els de cursos anteriors.

First-principles study of the neutral molecular metal Ni(tmdt)2.

The electronic structure of the molecular solid Ni(tmdt)2, the only well characterized neutral molecular metal to date, has been studied by means of first-principles density functional calculations. It is shown that these calculations correctly describe the metallic vs semiconducting behavior of molecular conductors of this type. The origin of the band overlap leading to the metallic character and the associated Fermi surfaces has been studied.

Art i ciència: converses

A la infància, Enric Canadell químic teòric i Àlex Nogué artista visual comparteixen pupitre i jocs de carrer a Castellfollit de la Roca, un poble de la Garrotxa, Girona. Segueixen trajectes vitals ben diferents i desenvolupen una ampla experiència professional internacional en la ciència i l'art. Quaranta-cinc anys més tard es retroben novament sota el projecte "En comptes de la revolució, converses" promogut per Cafè Central i l'Associació per les Arts Contemporànies H.ACC per tal de cercar coincidències en les seves activitats professionals aparentment tan dispars i en la seva forma de viure-les.

Joan Estelrich i l'Expansió Catalana. La traducció de Prat de la Riba i Cambó en la Itàlia feixista

El text presenta la important tasca de Joan Estelrich en projectar el problema nacional català a l'estranger entre els anys 1919-1926. Se subratlla l'empenta que dóna a la traducció d'obres de la cultura catalana en altres idiomes i especialment a l'italià. En aquest marc s'expliquen les relacions entre aquest intel·lectual català i l'italià Cesare Giardini. Seguint l'epistolari inèdit entre els dos, el text explica els rerefons en què es va fer la traducció de dos obres significatives com La nacionalitat catalana d'Enric Prat de la Riba i Entorn del feixisme italià de Francesc Cambó. En aquest marc, el text reflexiona i critica les interpretacions historiogràfiques que han llegit l'experiència de Cambó com la d'un autor proper al feixisme.

Joan Estelrich i l'Expansió Catalana. La traducció de Prat de la Riba i Cambó en la Itàlia feixista

El text presenta la important tasca de Joan Estelrich en projectar el problema nacional català a l'estranger entre els anys 1919-1926. Se subratlla l'empenta que dóna a la traducció d'obres de la cultura catalana en altres idiomes i especialment a l'italià. En aquest marc s'expliquen les relacions entre aquest intel·lectual català i l'italià Cesare Giardini. Seguint l'epistolari inèdit entre els dos, el text explica els rerefons en què es va fer la traducció de dos obres significatives com La nacionalitat catalana d'Enric Prat de la Riba i Entorn del feixisme italià de Francesc Cambó. En aquest marc, el text reflexiona i critica les interpretacions historiogràfiques que han llegit l'experiència de Cambó com la d'un autor proper al feixisme.

Equidad y eficiencia en la Estrategia de Lisboa: un reto estructural en los sistemas de educación básica en Europa

La estrategia de Lisboa de 2000 planteaba la necesidad de alcanzar, en una década, objetivos educativos de equidad y eficacia en los respectivos sistemas nacionales, medidos en términos de resultados académicos y profesionales. Más allá de la coyuntura de crecimiento económico en el que se plantearon aquellos objetivos, en los últimos años hemos asistido a procesos de convergencia, también en el ámbito universitario, que paradójicamente no han afectado a la estructura propia de los sistemas de educación básica, que salvo en los países nórdicos continúan reflejando cierta estratificación social. Precisamente, el modelo integrado de educación básica, ampliamente instalado en esos países, parece situarse como alternativa pedagógica para equilibrar objetivos de inclusión social y éxito académico. En este artículo se desarrollan estas dos ideas y se aboga por una política comunitaria más incisiva en este terreno.

Presentació Monografia: Educació i cooperació internacional en el marc de les desigualtats

La idea de cooperar o de fer cooperació internacional s'ha anat incorporant a les nostres vides -també en la vida acadèmica- en els darrers deu anys, sense que moltes vegades s'hagi aprofundit suficientment en què vol dir, no només etimol6gicament. En aquests moments, en els quals la situació en el món i les complexes relacions internacionals han experimentat canvis importants, s'imposa que ens aturem a pensar una mica sobre el perquè, el com, on i amb qui fem la cooperació internacional. Sobre el paper de l'educació en aquests nous contextos i, més en concret, en el que les universitats fan o poden fer en el que anomenem cooperació per al desenvolupament.

Sea Urchins Predation Facilitates Coral Invasion in a Marine Reserve

Macroalgae is the dominant trophic group on Mediterranean infralittoral rocky bottoms, whereas zooxanthellate corals are extremely rare. However, in recent years, the invasive coral Oculina patagonica appears to be increasing its abundance through unknown means. Here we examine the pattern of variation of this species at a marine reserve between 2002 and 2010 and contribute to the understanding of the mechanisms that allow its current increase. Because indirect interactions between species can play a relevant role in the establishment of species, a parallel assessment of the sea urchin Paracentrotus lividus, the main herbivorous invertebrate in this habitat and thus a key species, was conducted. O. patagonica has shown a 3-fold increase in abundance over the last 8 years and has become the most abundant invertebrate in the shallow waters of the marine reserve, matching some dominant erect macroalgae in abundance. High recruitment played an important role in this increasing coral abundance. The results from this study provide compelling evidence that the increase in sea urchin abundance may be one of the main drivers of the observed increase in coral abundance. Sea urchins overgraze macroalgae and create barren patches in the space-limited macroalgal community that subsequently facilitate coral recruitment. This study indicates that trophic interactions contributed to the success of an invasive coral in the Mediterranean because sea urchins grazing activity indirectly facilitated expansion of the coral. Current coral abundance at the marine reserve has ended the monopolization of algae in rocky infralittoral assemblages, an event that could greatly modify both the underwater seascape and the sources of primary production in the ecosystem.

The structure of Mediterranean rocky reef ecosystems across environmental and human gradients, and conservation implications

Historical exploitation of the Mediterranean Sea and the absence of rigorous baselines makes it difficult to evaluate the current health of the marine ecosystems and the efficacy of conservation actions at the ecosystem level. Here we establish the first current baseline and gradient of ecosystem structure of nearshore rocky reefs at the Mediterranean scale. We conducted underwater surveys in 14 marine protected areas and 18 open access sites across the Mediterranean, and across a 31-fold range of fish biomass (from 3.8 to 118 g m22). Our data showed remarkable variation in the structure of rocky reef ecosystems. Multivariate analysis showed three alternative community states: (1) large fish biomass and reefs dominated by non-canopy algae, (2) lower fish biomass but abundant native algal canopies and suspension feeders, and (3) low fish biomass and extensive barrens, with areas covered by turf algae. Our results suggest that the healthiest shallow rocky reef ecosystems in the Mediterranean have both large fish and algal biomass. Protection level and primary production were the only variables significantly correlated to community biomass structure. Fish biomass was significantly larger in well-enforced no-take marine reserves, but there were no significant differences between multi-use marine protected areas (which allow some fishing) and open access areas at the regional scale. The gradients reported here represent a trajectory of degradation that can be used to assess the health of any similar habitat in the Mediterranean, and to evaluate the efficacy of marine protected areas.

Multiple processes regulate long-term population dynamics of sea urchins on Mediterranean rocky reefs

We annually monitored the abundance and size structure of herbivorous sea urchin populations (Paracentrotus lividus and Arbacia lixula) inside and outside a marine reserve in the Northwestern Mediterranean on two distinct habitats (boulders and vertical walls) over a period of 20 years, with the aim of analyzing changes at different temporal scales in relation to biotic and abiotic drivers. P. lividus exhibited significant variability in density over time on boulder bottoms but not on vertical walls, and temporal trends were not significantly different between the protection levels. Differences in densities were caused primarily by variance in recruitment, which was less pronounced inside the MPA and was correlated with adult density, indicating density-dependent recruitment under high predation pressure, as well as some positive feedback mechanisms that may facilitate higher urchin abundances despite higher predator abundance. Populations within the reserve were less variable in abundance and did not exhibit the hyper-abundances observed outside the reserve, suggesting that predation effects maybe more subtle than simply lowering the numbers of urchins in reserves. A. lixula densities were an order of magnitude lower than P. lividus densities and varied within sites and over time on boulder bottoms but did not differ between protection levels. In December 2008, an exceptionally violent storm reduced sea urchin densities drastically (by 50% to 80%) on boulder substrates, resulting in the lowest values observed over the entire study period, which remained at that level for at least two years (up to the present). Our results also showed great variability in the biological and physical processes acting at different temporal scales. This study highlights the need for appropriate temporal scales for studies to fully understand ecosystem functioning, the concepts of which are fundamental to successful conservation and management.

Surface-dependent strategies and energy flux in benthic marine communities or, why corals do not exist in the Mediterranean

Most structure-building organisms in rocky benthic communities are surface-dependent because their energy inputs depend mainly on the surface they expose to water. Two photosynthetic strategies, divided into calcareous and non calcareous algae, strict suspension-feeders and photosynthetic suspension feeders (e.g. hermatypic corals) are the four main strategies evolutively acquired by benthic organisms. Competition between those strategies occur in relation to productivity of the different species, in such a way that, for given environmental conditions, species with a higher growth (P/B ratio) would dominate. At a worldwide scale, littoral marine benthos can he considered to fit into the four fields defined by two main axes: the first, relates to productivity and relies atrophic and oligotrophic waters and the second is defined by the degree of environmental variability or seasonality (from high to low). Coral reefs (marine ecosystems dominated by photosynthetic suspension feeders) develop in the space of oligotrophic areas with low variability, while kelp beds (marine ecosystem dominated by large, non calcareous algae) are to be found only in eutrophic places with a high variability. The space of eutrophic waters with a low variability do not has specially adapted, high structured, benthic marine ecosystems, and in these conditions opportunistic algae and animals predominate. Finally, photophilic mediterranean benthos -devoid of kelps and without hermatypic corals- typifies the field of oligotrophic areas with high variability; in its more genuine aspect, Mediterranean benthos is represented by small algae with a high percentage of calcareous thallii. In all cases strict suspension-feeders compete successfully with photosynthetic organisms only in situations of low irradiances or very high inputs of POM. In its turn, Mediterranean rocky benthos, in spite of its relative uniformity, is geographically organized along the same axes. The Gulf of Lions and the insular bottoms (Balearic Islands, for example) would correspond to the extremes of eutrophic-high variability areas and oligotrophic-low variability areas, respectively. Irradiance, nutrient and POM concentration, and hydrodynamism are the three variables which mainly affect the distribution of the different surface-dependent strategies, and thus, these parameters are of paramount interest for understanding the trophic structure of Mediterranean benthic communities. In environments non limited by light, nutrient availability, defined as the product between nutrient -POM concentration and hydrodynamism, states the dominance of calcareous versus non calcareous algae. Calcareous algae dominate in oligotrophic waters while non-calcareous algae dominate in moderately eutrophic waters. In light-limited environments, passive suspension feeders (octocorallaria, gorgonians) become dominant species if POM availability is enhanced by a high hydrodynamism (strong currents); in waters with a low charge of POM organisms of other groups, mainly active suspension feeders, predominate (sponges, bryozoans, scleractiniarians). In any case, there always exists a very variable bathymetric zone, depending on light attenuation and nutrient-POM availability, where encrusting calcareous algae strongly compete with suspension feeders (coralligenous).

Catálogo de las algas bentónicas (con exclusión de las diatomeas) de la costa catalana

Aquest treball és un intent d´actualitzar i sistematitzar les dades algològiques que es posseeixen referents al nostre país. Aquestes dades han estat obtingudes de la bibliografia existent, incloent-hi també nombroses observacions personals inèdites. La sistemàtica utilitzada ha estat, bàsicament, la proposada per PARKE i DIXON (1976). La distribució geogràfica de les espècies s'especifica en funció del reticle UTM. En aquest moment són 403 (28 Cyanophyta, 220 Rhodophyta, 69 Phaeophyta, 85 Chlorophyta i 1 Chrysophyta) les espècies que es coneixen a les costes del Principat.

Aproximación al conocimiento de las comunidades algales de la zona infralitoral superior de la costa catalana

Se presentan una serie de inventarios de la zona infralitoral superior realizados a lo largo de toda la costa catalana precisando las localidades de recolección y sus características. Los inventarios se agrupan en una serie de tablas las cuales se comentan en función de su composición florística. Finalmente, se hace una división de la costa catalana atendiendo a las distintas comunidades encontradas y se valora su distribución en relación a las características de la costa y a los posibles focos de contaminación. Se presta especial atención a las comunidades portuarias.