Feeding ecology and trophic relationships of fish species in the lower Guadiana River Estuary and Castro Marim e Vila Real de Santo Antonio Salt Marsh

In this study we analyze the feeding ecology and trophic relationships of some of the main fish species (Soleidae, Moronidae, Mullidae, Sparidae, Mugilidae, and Batrachoididae) of the lower Estuary of the Guadiana River and the Castro Marim e Vila Real de Santo Antonio Salt Marsh. We examined the stomachs of 1415 fish caught monthly between September 2000 and August 2001. Feeding indices and coefficients were determined and used along with the results of multivariate analysis to develop diagrams of trophic interactions (food webs). Results show that these species are largely opportunistic predators. The most important prey items are amphipods, gobies (Gobiidae), shrimps (Palaemon serratus and Crangon crangon), and polychaete worms. The lower Estuary and associated salt marshes are important nurseries and feeding grounds for the species studied. In this area, it is therefore important to monitor the effects of changes in river runoff, nutrient input, and temperature that result from construction of the Alqueva Dam upstream. (c) 2006 Elsevier Ltd. All rights reserved.

Structure and temporal variations of fish assemblages of the Castro Marim salt marsh, southern Portugal

We studied the ichthyofauna of the Castro Marim salt marsh based on monthly sampling surveys at five sites between September 2000 and August 2001. Sampling took place at night during rising neap tides using a 40-m long beach seine. We sampled a total of 7955 fish specimens (37 995.7 g), comprising 34 species and 17 families. The occurrence of most species was occasional, with Pomatoschistus microps (51.9%) and Atherina spp. (10.3%) being the most abundant species, accounting for 62.2% of the total fish captured. Biomass was dominated by the marine species Liza ramado (15.9%), Mullus surmuletus (13.5%), and Liza aurata (13.4%). Temperature and salinity showed a seasonal pattern, with minimums during the winter months and maximums during the summer months. In contrast, river flow peaked in winter and was lowest during summer. This pattern in river flow appears to be correlated with variations in the fish assemblages, which present two distinct compositions during the two periods. A few species characterise the winter fish assemblage, with dominance by residents and the presence of freshwater species, while the summer assemblage is characterised by the presence of many marine visitors that use the salt marsh in their first months/years of life. Temporal variations in total abundance and biomass reflect fluctuations in the dominant species. Resident species presented the highest abundance values, while marine adventitious species and marine species that use the salt marsh as a nursery ground contributed most to community species richness. Castro Marim salt marsh constitutes an important ecosystem for fishes, providing habitat for many species, especially juveniles, which find conditions within the salt marsh suitable for their development. (c) 2006 Elsevier Ltd. All rights reserved.

Feeding ecology of the deep-sea lanternshark Etmopterus pusillus (Elasmobranchii: Etmopteridae) in the northeast Atlantic

This study provides the first description of the feeding ecology of the smooth lanternshark Etmopterus pusillus based on stomach contents of specimens caught as bycatch in the Algarve (southern Portugal) with bottom trawling and bottom longline. The diet of E. pusillus consists mainly of fish (dry weight (% W)=87.1%; frequency of occurrence (%FO)=28.6%; number (%N)=30.3%), crustaceans (%W=7.7%; %FO=36.7%; %N=3.4%) and cephalopods (%W=4.7%; %FO=11.3%; %N=11.1%). The diet did not vary between sexes. Ontogenic changes were detected: crustaceans decreased in importance as the sharks increased in size and fish became dominant in the diet of adults. Combining two fishing methods provided broad information on the diet of E. pusillus, as bottom trawling caught smaller specimens and longlines caught larger individuals. E. pusillus feeds mainly on non-commercial species, and therefore does not compete directly with commercial fisheries. Finally, E. pusillus feeds in various parts of the water column and thus it can access a wide range of prey; however, this also means that it can be caught by both gears, making it more vulnerable in terms of conservation.

The estimation and improvement of the selectivity in crustacean and fish trawls

Tese de dout., Ciências e Tecnologias das Pescas, Faculdade de Ciências do Mar e do Ambiente, Univ. do Algarve, 2003

Potential of fisheries restocking off the Algarve coast using aquaculture produced marine fish

Tese de dout., Ciências do Mar, da Terra e do Ambiente (Ecologia Marinha), Faculdade de Ciências e Tecnologia, Univ. do Algarve, 2012

Evolution, gene regulation and functional analysis of BMP2 in fish

Bone morphogenetic proteins (BMPs) are multifunctional growth factors belonging to the transforming growth factor β (TGFβ) superfamily with a central role in bone formation and mineralization. BMP2, a founding member of this family, has demonstrated remarkable osteogenic properties and is clinically used to promote bone repair and fracture healing. Lack of basic data on factors regulating BMP2 expression and activity have hampered a better understanding of its role in bone formation and bone-related diseases. The objective of this work was to collect new functional data and determine spatiotemporal expression patterns in a fish system aiming towards a better understanding of BMP2 function and regulation. Transcriptional and post-transcriptional regulation of gilthead seabream BMP2 gene was inferred from luciferase reporter systems. Several bone- and cartilage-related transcription factors (e.g. RUNX3, MEF2c, SOX9 and ETS1) were found to regulate BMP2 transcription, while microRNA 20a was shown to affect stability of the BMP2 transcript and thus the mineralogenic capacity of fish bone-derived host cells. The regulation of BMP2 activity through an interaction with the matrix Gla protein (MGP) was investigated in vitro using BMP responsive elements (BRE) coupled to luciferase reporter gene. Although we demonstrated the functionality of the experimental system in a fish cell line and the activation of BMP signaling pathway by seabream BMP2, no conclusive evidence could be collected on a possible interaction beween MGP and BMP2. The evolutionary relationship among the members of BMP2/4/16 subfamily was inferred from taxonomic and phylogenetic analyses. BMP16 diverged prior to BMP2 and BMP4 and should be the result of an ancient genome duplication that occurred early in vertebrate evolution. Structural and functional data suggested that all three proteins are effectors of the BMP signaling pathway, but expression data revealed different spatiotemporal patterns in teleost fish suggesting distinct mechanisms of regulation. In this work, through the collection of novel data, we provide additional insight into the regulation, the structure and the phylogenetic relationship of BMP2 and its closely related family members.

Identification of novel molecular determinants of tissue mineralization in fish

The identification of genes involved in signaling and regulatory pathways, and matrix formation is paramount to the better understanding of the complex mechanisms of bone formation and mineralization, and critical to the successful development of therapies for human skeletal disorders. To achieve this objective, in vitro cell systems derived from skeletal tissues and able to mineralize their extracellular matrix have been used to identify genes differentially expressed during mineralization and possibly new markers of bone and cartilage homeostasis. Using cell systems of fish origin and techniques such as suppression subtractive hybridization and microarray hybridization, three genes never associated with mechanisms of calcification were identified: the calcium binding protein S100-like, the short-chain dehydrogenase/reductase sdr-like and the betaine homocysteine S-methyltransferase bhmt3. Analysis of the spatial-temporal expression of these 3 genes by qPCR and in situ hybridization revealed: (1) the up-regulation of sdr-like transcript during in vitro mineralization of gilthead seabream cell lines and its specificity for calcified tissues and differentiating osteoblasts; (2) the up-regulation of S100-like and the down-regulation of bhmt3 during in vitro mineralization and the central role of both genes in cartilaginous tissues undergoing endo/perichondral mineralization in juvenile fish. While expression of S100-like and bhmt3 was restricted to calcified tissues, sdr-like transcript was also detected in soft tissues, in particular in tissues of the gastrointestinal tract. Functional analysis of gene promoters revealed the transcriptional regulation of the 3 genes by known regulators of osteoblast and chondrocyte differentiation/mineralization: RUNX2 and RAR (sdr-like), ETS1 (s100-like; bhmt3), SP1 and MEF2c (bhmt3). The evolutionary relationship of the different orthologs and paralogs identified within the scope of this work was also inferred from taxonomic and phylogenetic analyses and revealed novel protein subfamilies (S100-like and Sdr-like) and the explosive diversity of Bhmt family in particular fish groups (Neoteleostei). Altogether our results contribute with new data on SDR, S100 and BHMT proteins, evidencing for the first time the role for these three proteins in mechanisms of mineralization in fish and emphasized their potential as markers of mineralizing cartilage and bone in developing fish.