Characterization of Hepatitis B virus (HBV) genotypes in patients from Rondônia, Brazil

Abstract Background Hepatitis B virus (HBV) can be classified into nine genotypes (A-I) defined by sequence divergence of more than 8% based on the complete genome. This study aims to identify the genotypic distribution of HBV in 40 HBsAg-positive patients from Rondônia, Brazil. A fragment of 1306 bp partially comprising surface and polymerase overlapping genes was amplified by PCR. Amplified DNA was purified and sequenced. Amplified DNA was purified and sequenced on an ABI PRISM® 377 Automatic Sequencer (Applied Biosystems, Foster City, CA, USA). The obtained sequences were aligned with reference sequences obtained from the GenBank using Clustal X software and then edited with Se-Al software. Phylogenetic analyses were conducted by the Markov Chain Monte Carlo (MCMC) approach using BEAST v.1.5.3. Results The subgenotypes distribution was A1 (37.1%), D3 (22.8%), F2a (20.0%), D4 (17.1%) and D2 (2.8%). Conclusions These results for the first HBV genotypic characterization in Rondônia state are consistent with other studies in Brazil, showing the presence of several HBV genotypes that reflects the mixed origin of the population, involving descendants from Native Americans, Europeans, and Africans.

Distribution of hepatitis c virus (hcv) genotypes in patients with chronic infection from Rondônia, Brazil

Abstract Background Hepatitis C virus (HCV) is an important human pathogen affecting around 3% of the human population. In Brazil, it is estimated that there are approximately 2 to 3 million HCV chronic carriers. There are few reports of HCV prevalence in Rondônia State (RO), but it was estimated in 9.7% from 1999 to 2005. The aim of this study was to characterize HCV genotypes in 58 chronic HCV infected patients from Porto Velho, Rondônia (RO), Brazil. Methods A fragment of 380 bp of NS5B region was amplified by nested PCR for genotyping analysis. Viral sequences were characterized by phylogenetic analysis using reference sequences obtained from the GenBank (n = 173). Sequences were aligned using Muscle software and edited in the SE-AL software. Phylogenetic analyses were conducted using Bayesian Markov chain Monte Carlo simulation (MCMC) to obtain the MCC tree using BEAST v.1.5.3. Results From 58 anti-HCV positive samples, 22 were positive to the NS5B fragment and successfully sequenced. Genotype 1b was the most prevalent in this population (50%), followed by 1a (27.2%), 2b (13.6%) and 3a (9.0%). Conclusions This study is the first report of HCV genotypes from Rondônia State and subtype 1b was found to be the most prevalent. This subtype is mostly found among people who have a previous history of blood transfusion but more detailed studies with a larger number of patients are necessary to understand the HCV dynamics in the population of Rondônia State, Brazil.

Brazilian mosquito (Diptera: Culicidae) fauna: I. Anopheles species from Porto Velho, Rondônia state, western Amazon, Brazil

This study contributes to knowledge of Anopheles species, including vectors of Plasmodium from the western Brazilian Amazon in Porto Velho, Rondônia State. The sampling area has undergone substantial environmental changes as a consequence of agricultural and hydroelectric projects, which have caused intensive deforestation and favored habitats for some mosquito species. The purpose of this study was to diagnose the occurrence of anopheline species from collections in three locations along an electric-power transmission line. Each locality was sampled three times from 2010 to 2011. The principal adult mosquitoes captured in Shannon trap were Anopheles darlingi, An. triannulatus, An. nuneztovari l.s., An.gilesi and An. costai. In addition, larvae were collected in ground breeding sites for Anopheles braziliensis, An. triannulatus, An. darlingi, An. deaneorum, An. marajoara, An. peryassui, An. nuneztovari l.s. and An. oswaldoi-konderi. Anopheles darlingi was the most common mosquito in the region. We discuss Culicidae systematics, fauna distribution, and aspects of malaria in altered habitats of the western Amazon.

Natural infection of triatomines (Hemiptera: Reduviidae) by trypanosomatids in two different environments in the municipality of Ouro Preto do Oeste, State of Rondônia, Brazil

INTRODUCTION: This study analyzed the occurrence and the contamination of triatomines by trypanosomatids in Orbignya speciosa (babassu) specimens in the State of Rondônia, Brazil, in two different environments (pasture and woods). METHODS: Capture of triatomines on babassus and microscopic search for trypanosomatids in their digestive tube were carried out. RESULTS: Four hundred ninety-four (494) specimens were captured (Rhodnius prolixus and R.robustus), of which 35.6% of the triatomines were positive for trypanosomatids. CONCLUSIONS: The high index of natural infection along with the abundance of triatomines points out to the necessity to create an epidemiological surveillance system to monitor vector-borne transmission and deepen the studies on the ecology of such vectors in the Amazon.

Incapacidade para o trabalho: análise dos benefícios auxílio-doença concedidos no estado de Rondônia

Trata-se de um estudo epidemiológico descritivo com objetivo de estimar a prevalência e a duração dos benefícios auxílio-doença, concedidos pelo Instituto Nacional de Seguro Social, bem como dos fatores associados à incapacidade para o trabalho entre os trabalhadores empregados em Rondônia em 2008. As prevalências foram apresentadas por 10.000 trabalhadores e estratificadas por sexo, idade, diagnóstico, atividade econômica, espécie e duração dos benefícios. Os homens apresentaram maiores prevalência e duração dos benefícios. Os benefícios previdenciários mostraramse 2,5 mais prevalentes do que os acidentários e ambos aumentaram com a idade. Os acidentários foram mais prevalentes na faixa etária de 50-59 anos. Silvicultura, construção civil e locação de mão de obra apresentaram as maiores prevalências. Os principais grupos diagnósticos foram lesões; doenças do sistema osteomuscular e doenças do aparelho digestivo. A duração dos benefícios auxílio-doença foi maior entre homens, com > 40 anos e na espécie previdenciária. A atividade econômica é um importante fator de risco para a incapacidade para o trabalho, e precisa ser mais bem explorada como tal visando melhorar a prevenção de doenças e diminuir o impacto na saúde dos trabalhadores decorrentes das condições ambientais e dos processos de trabalho.

High occurence of Entamoeba histolytica in the municipalities of Ariquemes and Monte Negro, state of Rondônia, Western Amazonia, Brazil

Introduction: Entamoeba histolytica infections were investigated in residents of the Ariquemes and Monte Negro municipalities in Rondônia State, Brazil. Methods: Stool samples of 216 individuals were processed by the spontaneous sedimentation method and analyzed by microscopy for detection of the E. histolytica/E. dispar complex, followed by the immunoassay method using an enzyme-linked immunosorbent assay-based kit for the E. histolytica stool antigen. Results: E. histolytica/E. dispar cysts were present in 61% (50/82) and 44% (59/134) of the samples from Ariquemes and Monte Negro respectively, with a significant difference in the occurrence of infection between the two populations [p < 0.05; χ2 = 5.2; odds ratio = 2.0 (1.1 - 3.6)]. The E. histolytica antigen detection rate was 36.6% (30/82) for stool samples from Ariquemes, and 19.4% (26/134) for stool taken from the residents of Monte Negro. The rate of the occurrence of amoebiasis was significantly higher in the population from Ariquemes [p < 0.05; χ2= 7.8; odds ratio = 2.4 (1.2 - 4.7)]. Discussion: Due to the high occurrence of E. histolytica infected residents diagnosed in the region and the unavailability in local clinics of a test to distinguish between the two Entamoeba species, physicians should consider treating E. histolytica/E.dispar infections. Conclusion: The results indicate that E. histolytica infection is highly endemic in the studied areas.

Primeiro relato de larvas de Eustrongylides sp. (Nematoda: Dioctophymatidae) em Hoplias malabaricus (Characiformes: Erythrinidae) no Estado de Rondônia, Amazônia Ocidental, Brasil

O presente artigo descreve o primeiro relato de larvas de Eustrongylides sp. em Hoplias malabaricus Bloch, 1794 (Characiformes: Erythrinidae) no Estado de Rondônia, Amazônia Ocidental, Brasil, sendo mais um parasita com a possibilidade de contaminar humanos no Estado.

Epidemiological aspects of American cutaneous leishmaniasis and phlebotomine sandfly population, in the municipality of Monte Negro, State of Rondônia, Brazil

INTRODUCTION: This work was carried out on the purpose of identifying the species of phlebotomine sandflies in the municipality of Monte Negro, state of Rondonia, Brazil, that may have been transmitting the American cutaneous leishmaniasis (ACL), and concisely describe epidemiological aspects of disease. METHODS: The epidemiologic and socioeconomical indicators were obtained from government institutions and the local Municipal Secretary of Health. Phlebotomine sandflies were captured using CDC light traps between July 2006 to July 2008. The total of 1,240 of female sandflies were examined by PCR method directed to k-DNA. RESULTS: There has been a significant decrease in the incidence of ACL of about 50% over the last ten years in the municipality. A total of 1,935 specimens of 53 sandfly species were captured, three of the genus Brumptomyia genus and 50 of the genus Lutzomyia. The predominant species was Lutzomyia acanthopharynx, Lutzomyia whitmani, Lutzomyia geniculata and Lutzomyia davisi. None were positive for Leishmania sp. CONCLUSIONS: Four sandflies species were found in the State of Rondonia for the first time: Brumptomyia brumpti, Lutzomyia tarapacaensis, Lutzomyia melloi and Lutzomyia lenti. The presence of Lutzomyia longipalpis, was also captured. Socioeconomical improvement of Brazilian economy and the increase of environmental surveillance in the last 15 years collaborated in the decrease of people exposed to vectors, reducing the incidence of ACL.

Notas, novos registros e novas espécies de Ibidionini (Coleoptera, Cerambycidae)

Novas espécies descritas do Brasil: Tropidion terminatum sp. nov. e Tropidion una sp. nov. (Rondônia); Tropidion buriti sp. nov. (Piauí); Compsibidion manauara sp. nov. (Manaus), Compsibidion elianae sp. nov. (Goiás); Compsibidion novalimae sp. nov. e Compsibidion peti sp. nov. (Minas Gerais). Do Brasil (Mato Grosso) e da Bolívia (Santa Cruz), Compsibidion ybyra sp. nov.; da Venezuela (Guarico), Tropidion jolyi sp. nov.; da Bolívia (Santa Cruz), Dodecaibidion bolivianum sp. nov. e Pygmodeon maculatum sp. nov. Minibidion captiosus nom. nov. é proposto para Minibidion bicolor Martins, Galileo & Limeira-de Oliveira, 2011. São estabelecidos novo status para Compsibidion rubricolle Melzer, 1935, e notas sobre Heterachthes tysiphonis (Thomson, 1867). São apresentados novos registros para Tropidion zonapterum (Martins, 1962), Compsibidion campestre (Gounelle, 1908) e Kolonibidion femoratum (Martins, 1971).

Novos táxons e novos registros sobre Cerambycidae (Coleoptera) Neotropicais

Novos táxons e novos registros sobre Cerambycidae (Coleoptera) Neotropicais. Novos táxons descritos em Cerambycinae, Eligmodermini: Eligmoderma lara sp. nov. da Venezuela; Elaphidiini: Cratericus gen. nov., espécie-tipo, C. divaricatus sp. nov., da Jamaica. Em Lamiinae, Desmiphorini: Capillicornis gen. nov., espécie-tipo, C. basilaris sp. nov. do Equador; Cotycicuiara acuminata sp. nov. do Panamá; C. guiana sp. nov. da Guiana Francesa; Eupromerini: Puanama skillmani sp. nov. do Brasil (Rondônia). Novos registros são feitos para Temnopis martinezi Martins, 1995 (Oemini) e Estoloides (E.) aurantius Martins & Galileo, 2010 (Desmiphorini). A localidade-tipo de Hovorelus adiectus Galileo & Martins, 2010 (Prioninae, Anacolini) é corrigida e novos dados são acrescentados.

Novos táxons de Lamiinae (Coleoptera, Cerambycidae) da América do Sul

Novos táxons descritos: Acanthoderini, Nesozineus osorioensis sp. nov., do Brasil (Rio Grande do Sul); Calliini, Drycothaea clara sp. nov., do Brasil (Rondônia) e Drycothaea hovorei sp. nov., do Equador (Napo); Forsteriini, Itacolomi gen. nov., espécie-tipo I. letiziae sp. nov., do Brasil (Minas Gerais); Yapyguara gen. nov., espécie-tipo Y. fusca sp. nov., da Bolívia (Santa Cruz); Xenofreini, Xenofrea zischkai sp. nov., do Equador (Napo) e da Bolívia (Santa Cruz).

Paracoccidioides brasiliensis infection in dogs from Western Brazilian Amazon

The objective of the study was to evaluate Paracoccidioides brasiliensis infection in urban dogs from the municipality of Monte Negro, Rondonia, Western Brazilian Amazon. The serum samples (n=126) were analyzed by indirect ELISA and the immunodiffusion test using P. brasiliensis gp43 and exoantigen as antigens, respectively. A positivity of 54.8% was observed only in the ELISA test and no statistical difference was observed in the seroprevalence in relation to age or sex. This is the first paracoccidioidomycosis survey carried out with dogs from the Western Brazilian Amazon. The higher positivity rates of P. brasiliensis infection observed in this study suggest that veterinarians must be alert to detect new cases of natural disease in dogs living in paracoccidioidomycosis endemic areas.

Towards a precise test for malaria diagnosis in the Brazilian Amazon: comparison among field microscopy, a rapid diagnostic test, nested PCR, and a computational expert system based on artificial neural networks

Abstract Background Accurate malaria diagnosis is mandatory for the treatment and management of severe cases. Moreover, individuals with asymptomatic malaria are not usually screened by health care facilities, which further complicates disease control efforts. The present study compared the performances of a malaria rapid diagnosis test (RDT), the thick blood smear method and nested PCR for the diagnosis of symptomatic malaria in the Brazilian Amazon. In addition, an innovative computational approach was tested for the diagnosis of asymptomatic malaria. Methods The study was divided in two parts. For the first part, passive case detection was performed in 311 individuals with malaria-related symptoms from a recently urbanized community in the Brazilian Amazon. A cross-sectional investigation compared the diagnostic performance of the RDT Optimal-IT, nested PCR and light microscopy. The second part of the study involved active case detection of asymptomatic malaria in 380 individuals from riverine communities in Rondônia, Brazil. The performances of microscopy, nested PCR and an expert computational system based on artificial neural networks (MalDANN) using epidemiological data were compared. Results Nested PCR was shown to be the gold standard for diagnosis of both symptomatic and asymptomatic malaria because it detected the major number of cases and presented the maximum specificity. Surprisingly, the RDT was superior to microscopy in the diagnosis of cases with low parasitaemia. Nevertheless, RDT could not discriminate the Plasmodium species in 12 cases of mixed infections (Plasmodium vivax + Plasmodium falciparum). Moreover, the microscopy presented low performance in the detection of asymptomatic cases (61.25% of correct diagnoses). The MalDANN system using epidemiological data was worse that the light microscopy (56% of correct diagnoses). However, when information regarding plasma levels of interleukin-10 and interferon-gamma were inputted, the MalDANN performance sensibly increased (80% correct diagnoses). Conclusions An RDT for malaria diagnosis may find a promising use in the Brazilian Amazon integrating a rational diagnostic approach. Despite the low performance of the MalDANN test using solely epidemiological data, an approach based on neural networks may be feasible in cases where simpler methods for discriminating individuals below and above threshold cytokine levels are available.

Prevalence and risk factors of Hepatitis C virus infection in Brazil, 2005 through 2009: a cross-sectional study

Abstract Background Hepatitis C chronic liver disease is a major cause of liver transplant in developed countries. This article reports the first nationwide population-based survey conducted to estimate the seroprevalence of HCV antibodies and associated risk factors in the urban population of Brazil. Methods The cross sectional study was conducted in all Brazilian macro-regions from 2005 to 2009, as a stratified multistage cluster sample of 19,503 inhabitants aged between 10 and 69 years, representing individuals living in all 26 State capitals and the Federal District. Hepatitis C antibodies were detected by a third-generation enzyme immunoassay. Seropositive individuals were retested by Polymerase Chain Reaction and genotyped. Adjusted prevalence was estimated by macro-regions. Potential risk factors associated with HCV infection were assessed by calculating the crude and adjusted odds ratios, 95% confidence intervals (95% CI) and p values. Population attributable risk was estimated for multiple factors using a case–control approach. Results The overall weighted prevalence of hepatitis C antibodies was 1.38% (95% CI: 1.12%–1.64%). Prevalence of infection increased in older groups but was similar for both sexes. The multivariate model showed the following to be predictors of HCV infection: age, injected drug use (OR = 6.65), sniffed drug use (OR = 2.59), hospitalization (OR = 1.90), groups socially deprived by the lack of sewage disposal (OR = 2.53), and injection with glass syringe (OR = 1.52, with a borderline p value). The genotypes 1 (subtypes 1a, 1b), 2b and 3a were identified. The estimated population attributable risk for the ensemble of risk factors was 40%. Approximately 1.3 million individuals would be expected to be anti-HCV-positive in the country. Conclusions The large estimated absolute numbers of infected individuals reveals the burden of the disease in the near future, giving rise to costs for the health care system and society at large. The known risk factors explain less than 50% of the infected cases, limiting the prevention strategies. Our findings regarding risk behaviors associated with HCV infection showed that there is still room for improving strategies for reducing transmission among drug users and nosocomial infection, as well as a need for specific prevention and control strategies targeting individuals living in poverty.

Identificação e caracterização de ambientes homogêneos de eventos de seca/umidade com base em simulações climáticas regionais

O objetivo deste trabalho foi identificar e caracterizar ambientes homogêneos com base na ocorrência de eventos de seca/umidade na Região Centro-Norte do Brasil, compreendendo os Estados de Rondônia, Mato Grosso, Goiás e Tocantins. Para esse fim, utilizou-se o índice quantitativo de seca denominado Anomalia de Umidade de Palmer (Z-index). Os dados climáticos de entrada utilizados por esse índice para quantificar os eventos de seca/umidade foram simulados pelo modelo regional climático RegCM3 ("Regional ClimateModel - version3"), para o período de 1975 a 1989. Por meio de análise de agrupamento foram identificados 13 ambientes homogêneos. Esses ambientes homogêneos foram caracterizados por meio da probabilidade de ocorrência de eventos de seca/umidade, densidade relativa destes eventos, variabilidade da precipitação pluvial anual e a probabilidade de ocorrência de seca na época das águas (outubro a maio). No Estado do Mato Grosso observou-se o maior número de ambientes homogêneos e na Região Sudoeste desse Estado, o ambiente 11, obteve a maior probabilidade de ocorrência de eventos extremamente seco, 9%. O ambiente 10, localizado no extremo leste de Goiás, teve a menor mediana para a precipitação pluvial anual. O evento climático com maior probabilidade de ocorrência na região de estudo é o próximo ao normal ou normalidade de umidade.