Factor analysis applied to genome prediction for high-dimensional phenotypes in pigs.

The aim of the present study was to propose and evaluate the use of factor analysis (FA) in obtaining latent variables (factors) that represent a set of pig traits simultaneously, for use in genome-wide selection (GWS) studies. We used crosses between outbred F2 populations of Brazilian Piau X commercial pigs. Data were obtained on 345 F2 pigs, genotyped for 237 SNPs, with 41 traits. FA allowed us to obtain four biologically interpretable factors: ?weight?, ?fat?, ?loin?, and ?performance?. These factors were used as dependent variables in multiple regression models of genomic selection (Bayes A, Bayes B, RR-BLUP, and Bayesian LASSO). The use of FA is presented as an interesting alternative to select individuals for multiple variables simultaneously in GWS studies; accuracy measurements of the factors were similar to those obtained when the original traits were considered individually. The similarities between the top 10% of individuals selected by the factor, and those selected by the individual traits, were also satisfactory. Moreover, the estimated markers effects for the traits were similar to those found for the relevant factor.

Tandem mass spectrometry applied to isolation and characterization of natural colorants from Actinomycetes.

2009

Energy balance model applied to pasture experimental areas in São Paulo State, Brazil.

The Simple Algorithm for Evapotranspiration Retrieving (SAFER) was used to estimate biophysical parameters and theenergy balance components in two different pasture experimental areas, in the São Paulo state, Brazil. The experimentalpastures consist in six rotational (RGS) and three continuous grazing systems (CGS) paddocks. Landsat-8 images from2013 and 2015 dry and rainy seasons were used, as these presented similar hydrological cycle, with 1,600 mm and 1,613mm of annual precipitation, resulting in 19 cloud-free images. Bands 1 to 7 and thermal bands 10 and 11 were used withweather data from a station located nearthe experimental area. NDVI, biomass, evapotranspiration and latent heat flux(λE) temporal values statistically differ CGS from RGS areas. Grazing systems influences the energy partition and theseresults indicate that RGS benefits biomass production, evapotranspiration and the microclimate, due higher LE values.SAFER is a feasible tool to estimate biophysical parameters and energy balance components in pasture and has potentialto discriminate continuous and rotation grazing systems in a temporal analysis.