Factor analysis applied to genome prediction for high-dimensional phenotypes in pigs.

The aim of the present study was to propose and evaluate the use of factor analysis (FA) in obtaining latent variables (factors) that represent a set of pig traits simultaneously, for use in genome-wide selection (GWS) studies. We used crosses between outbred F2 populations of Brazilian Piau X commercial pigs. Data were obtained on 345 F2 pigs, genotyped for 237 SNPs, with 41 traits. FA allowed us to obtain four biologically interpretable factors: ?weight?, ?fat?, ?loin?, and ?performance?. These factors were used as dependent variables in multiple regression models of genomic selection (Bayes A, Bayes B, RR-BLUP, and Bayesian LASSO). The use of FA is presented as an interesting alternative to select individuals for multiple variables simultaneously in GWS studies; accuracy measurements of the factors were similar to those obtained when the original traits were considered individually. The similarities between the top 10% of individuals selected by the factor, and those selected by the individual traits, were also satisfactory. Moreover, the estimated markers effects for the traits were similar to those found for the relevant factor.

The role of combinations between fasting intervals and lairage times on pigs welfare, stomach content and carcass and meat quality.

2016

The evaluation of bone composition and carcass quality traits on back fracture in pigs stunned using electrical system.

2016

Occurrence of antibodies against Neospora caninum in wild pigs (Sus scrofa) in the Pantanal, Mato Grosso do Sul, Brazil.

Serum samples from 83 free living wild pigs (Sus scrofa) from the Nhecolândia region, Pantanal do Mato Grosso, Brazil, were examined for the presence of antibodies against Neospora caninum by means of the indirect fluorescence antibody test (IFAT) with a cut off of 50. Antibodies were present in 10.8%, with titers of: 1:200 in one animal, 1:400 in four and 1:800 in four. The test showed an association between sex and presence of antibodies, with females showing occurrence of 20.5% and males 2.3% (p = 0.017). No association was found between age and occurrences of antibodies against this parasite. This was the first observation of N. caninum antibodies in Brazilian wild pigs from Pantanal.