Comparison of steroid substrates and inhibitors of P-glycoprotein by 3D-QSAR analysis

Steroid derivatives show a complex interaction with P-glycoprotein (Pgp). To determine the essential structural requirements of a series of structurally related and functionally diverse steroids for Pgp-mediated transport or inhibition, a three-dimensional quantitative structure activity relationship study was performed by comparative similarity index analysis modeling. Twelve models have been explored to well correlate the physiochemical features with their biological functions with Pgp on basis of substrate and inhibitor datasets, in which the best predictive model for substrate gave cross-validated q(2) = 0.720, non-cross-validated r(2) = 0.998, standard error of estimate SEE = 0.012, F = 257.955, and the best predictive model for inhibitor gave q(2) = 0.536, r(2) = 0.950, SEE = 1.761 and F = 45.800. The predictive ability of all models was validated by a set of compounds that were not included in the training set. The physiochemical similarities and differences of steroids as Pgp substrate and inhibitor, respectively, were analyzed to be helpful in developing new steroid-like compounds. (C) 2004 Elsevier B.V. All rights reserved.

Development of the microbial communities in Lake Donghu in relation to water quality

There is increasing recognition that protozoa is very useful in monitoring and evaluating water ecological healthy and quality. In order to study the relationship between structure and function of protozoan communities and water qualities, six sampling stations were set on Lake Donghu, a hypereutrophic subtropical Chinese lake. Microbial communities and protists sampling from the six stations was conducted by PFU (Polyurethane foam unit) method. Species number (S), diversity index (DI), percentage of phytomastigophra, community pollution value (CPV), community similarity and heterophy index (HI) were mensurated. The measured indicators of water quality included total phosphorus (TP), dissolved oxygen (DO), Chemical oxygen demand (COD), NH4 (+), NO2 (-) and NO3-. Every month water samples from stations I, II, III, IV were chemically analyzed for a whole year, Among the chemically analyzed stations, station I was the most heavily polluted, station II was the next, stations III and IV had similar pollution degrees. The variable tendencies of COD, TP, NH3, NO2-, NO3-, and DO during the year was approximately coincident among the six stations. Analysis from the community parameters showed that the pollution of station 0 was much more serious than others, and station V was the most slight. Of the community parameters, CPV and HI were sensitive in reflecting the variables of the water quality. Community similarity index was also sensitive in dividing water qualities and the water quality status of different stations could be correctly classified by the cluster analysis. DI could reflect the tendency of water quality gradient, species number and percentage of Phytomastigophora was not obvious in indicating the water quality gradient.

Soil microbial community analysis using terminal restriction fragment length polymorphisms

Terminal restriction fragment length polymorphism (T-RFLP) analysis is a polymerase chain reaction (PCR)-fingerprinting method that is commonly used for comparative microbial community analysis. The method can be used to analyze communities of bacteria, archaea, fungi, other phylogenetic groups or subgroups, as well as functional genes. The method is rapid, highly reproducible, and often yields a higher number of operational taxonomic units than other, commonly used PCR-fingerprinting methods. Sizing of terminal restriction fragments (T-RFs) can now be done using capillary sequencing technology allowing samples contained in 96- or 384-well plates to be sized in an overnight run. Many multivariate statistical approaches have been used to interpret and compare T-RFLP fingerprints derived from different communities. Detrended correspondence analysis and the additive main effects with multiplicative interaction model are particularly useful for revealing trends in T-RFLP data. Due to biases inherent in the method, linking the size of T-RFs derived from complex communities to existing sequence databases to infer their taxonomic position is not very robust. This approach has been used successfully, however, to identify and follow the dynamics of members within very simple or model communities. The T-RFLP approach has been used successfully to analyze the composition of microbial communities in soil, water, marine, and lacustrine sediments, biofilms, feces, in and on plant tissues, and in the digestive tracts of insects and mammals. The T-RFLP method is a user-friendly molecular approach to microbial community analysis that is adding significant information to studies of microbial populations in many environments.

Studies on quantitative structure-activity relationship between the structures of derivatives of benzamide and their antiallergic activities

Molecular connectivity index and comparative molecular field analysis (CoMFA) have been applied to the studies of the correlation of the derivatives of benzamide and their antiallergic activities. The results achieved by using CoMFA based on 3D factors are much better than that obtained by using multiple regression analysis based on majorly 2D structural information. The CoMFA results show that the dominant factor which affects activity is steric, whereas electrostatic effect only plays an unimportant role.

中国粮食生产的区域演进研究

Grain is one of the primary material conditions of the human survival and the grain production concerns the stability and development of the society directly. The regional patterns influence greatly on the grain production and the rational production distribution the regional comparative advantages and promotes grain production. This thesis starts with summarizing of the characteristics of changes and the overall trend of regional pattern of grain production of our country since 1949. Then it carries on network analyses to the factors, which influences the evolvement of regional grain production patterns of our country. And finally it gives some proposals to the grain production distribution in the future. The main content includes: Firstly, Reviewing the regional evolvement of grain production in our country, and analyzing the changes of the regional pattern of grain production of our country on the provincial scale and county scale separately, since 1949, especially since the reform and opening up policy. The main grain production areas are acting an important position in ensuring the national grain security, so this thesis analyses the main matter of the main grain production areas, forecasts the grain production situation in the future, and selects the Northeastern main grain production areas as the typical area to carry on the positive research. Secondly, this thesis analyzes the origin causes from two respects of natural and social economy of the regional evolvement pattern of grain production in China. Thirdly, based on the summarizing to the status of the regional pattern of the grain production, this thesis proposes the precept of the grain production distribution in the future in our country. Therefore, the areas of three major cereal crops, rice, wheat and corn, are confirmed on the basis of the comparative advantages. Finally, this thesis puts forward the security system of guaranteeing the grain production progressing steady in China. According to the above analysis, some conclusions have been achieved as follows: (1) The grain gross production gets on extricating itself from awkward position frequently while fluctuating greatly annually since 1949 in China. (2) Since the reform, its traditional regional pattern of grain production, the most of which was concentrated in the south area, has changed rapidly. China's center of gravity of grain production has shifted from the south to the north, and on the belts of latitude, the grain production has represented a trend of focusing to the middle area in China. (3) The main grain production areas play a very important role in ensuring China's food security. With their relative severe situation of the problems of agriculture, rural area and peasant, China has carried out a series of measures, which aim at improving the food-producing conditions of the main grain production areas, and enhancing the grain yields there. Under this condition, a forecast of the producing amount of the main grain production areas under the nation's self-supplying rate of over 95% shows that the increasing provision production in these areas can meet the demand of the country. (4) The natural and social economic factors influence together on the changes of the grain production regional pattern. Along with the state system transition and progress of agricultural science and technology, the regional pattern of grain production is affected heavier by the agricultural policy and technological elements. (5) The grain production will be concentrated to the middle province in the future, which economic development level being medium-sized; According to crop allocation, although the rice superiority production area located in the South, its comparative advantage index is little in some degree. Meanwhile, the wheat and corn superiority production areas are in the North mainly and its scale superiority and production level advantage are all comparatively obviously.

斜角入射沉积法制备渐变折射率薄膜的折射率分析

斜角入射沉积法是一种制备薄膜的新颖方法，它可以用来制备渐变折射率薄膜．本文首先探讨了膜料的沉积入射角为α，薄膜柱状生长倾斜角为β时的薄膜的填充系数；之后利用drude理论，分析研究了斜角入射沉积法制备渐变折射率薄膜的折射率与薄膜的入射角和生长方向的关系．

放牧对内蒙古草原群落和土壤种子库的影响及两者关系的研究

选取内蒙古草原三种主要草原类型（草甸草原、典型草原和荒漠草原）代表性群落羊草杂类草群落、羊草群落和大针茅群落、小针茅群落，应用样线法沿水分梯度研究放牧对内蒙古草原不同植物群落功能群组成、多样性、生产力以及多样性与生产力关系的影响和放牧对土壤种子库组成、大小以及多样性的影响，在此基础上，研究土壤种子库与地上植被间的关系。主要结论如下： 1 放牧对植物群落的影响 荒漠草原的放牧演替规律为小针茅群落→猪毛菜 + 小针茅群落→猪毛菜群落;典型草原为羊草或大针茅群落→糙隐子草 + 大针茅群落或克氏针茅群落→星毛委陵菜 + 糙隐子草群落;草甸草原为羊草杂类草群落→羊草 + 贝加尔针茅群落，这是不同物种对牧压的不同适应结果造成的。 放牧使4种草原群落生活型功能群组分间发生强烈的生态替代作用，但不同的群落生态替代模式不同：放牧使小针茅群落多年生丛生禾草作用减弱，一二年生草本作用增强;羊草群落和大针茅群落多年生丛生禾草、多年生根茎禾草作用减弱，多年生杂类草作用增强;羊草杂类草群落多年生根茎禾草作用减弱，多年生丛生禾草作用增强。放牧使非旱生和C3植物作用减弱，而旱生、C4植物作用增强。 放牧对4种群落物种和功能群多样性的影响随不同的群落而表现不同：物种丰富度、物种多样性、生活型多样性 和水分生态类型多样性除羊草杂类草群落外随放牧强度的加大而降低，但适度放牧增加了羊草杂类草群落的上述多样性指标。 群落地上现存量一般随放牧强度的增大而下降，但小针茅群落反之，主要与一年生植物猪毛菜的生物量迅速增加有关。除羊草群落外，0~10 cm 地下生物量随放牧强度的变化不显著;除大针茅群落外，放牧显著降低0~30 cm 地下生物量。 放牧影响下内蒙古草原植物群落生物量随水分生态类型多样性的升高而升高，其回归方程为：Y = 809 + 774x （R2=0.84, P<0.001），其中Y代表群落地上现存量和地下生物量之和，x代表群落水分生态类型多样性。 2 放牧对土壤种子库的影响 小针茅群落、大针茅群落、羊草群落和羊草杂类草群落土壤种子库组成中均以多年生杂类草为主，分别占各自群落种子库总物种数的40%、52%、54%和67%。 生活型功能群种子库密度除羊草杂类草群落外，均以一二年生草本占优势。中度放牧升高了除小针茅群落外多年生禾草种子库密度;放牧增大了小针茅群落和羊草杂类草群落一二年生草本种子库密度;除羊草杂类草群落外，放牧对多年生杂类草种子库密度影响不大;总种子库组成中，灌木半灌木和小半灌木种子库密度不大，不随取样时间和牧压而变化。 中度放牧种子库总密度最大，小针茅群落在重度放牧最大，主要是由于猪毛菜种子库密度在重度放牧突增所致。总体上，内蒙古草原4种群落在不同取样时间不同牧压下种子库总密度波动在20.8~3819.2粒/m2。 土壤种子库物种丰富度最大值一般出现在10月份，除羊草杂类草群落外，不放牧群落较放牧群落为高，中度放牧使羊草杂类草群落土壤种子库物种丰富度增加。中度放牧增加了小针茅群落、大针茅群落7月份和羊草杂类草群落各取样时间土壤种子库物种多样性。 3 地上植被与土壤种子库的关系 土壤种子库的优势种在特定时间特定放牧强度下与地上现有植被优势种一致，但一致率仅为三次取样时间不同放牧强度下总体的23.3%。 地上植被与土壤种子库物种组成相似性指数受不同取样时间的影响，一般的10月取样最大。不同放牧强度对二者间的相似性亦有影响，中度放牧提高了小针茅群落、羊草杂类草群落各取样时间和大针茅群落、羊草群落4月份的相似性指数。隔年二次萌发法提高了二者间的相似性水平。总体上相似性指数变动在0.1~0.75之间。 地上植被现存量、总密度与各取样时间土壤种子库总密度之间不存在显著的相关性。 4 对于估计土壤种子库密度、物种组成和确定种子库与地上植被间的关系，隔年二次萌发法对于弥补直接萌发法本身所具有的不足不失为一种有益的尝试。

紫茎泽兰种群补充特征

外来种紫茎泽兰 (Eupatorium adenophorum Spreng.) 对我国西南地区生态系统的危害已长达50~60年之久，我国于20世纪70年代开展紫茎泽兰的研究，但目前仍然没有能力将其限制在一个可控范围之内，随着我国对生物多样性重要性认识的加深，对于紫茎泽兰的研究也越来越深入。本文以四川攀枝花受入侵生态系统为例，通过对该地区植被、土壤种子库以及当地紫茎泽兰无性繁殖和种子萌发特征开展研究，分析受入侵生态系统的特征，结合紫茎泽兰种群补充特征，揭示紫茎泽兰入侵机制，探索管理受害生态系统的方法。 所选实验点为紫茎泽兰危害严重的地带，群落中紫茎泽兰为优势种，伴生种灌木18种，草本植物65种，草本层以紫茎泽兰最为昌盛，种群构成为1～4年生植株与其荫庇下大量的实生幼苗，Drude多度极大，频度达100%。紫茎泽兰与灌木重要值之间极显著负相关 (P<0.01) ，与其他草本重要值之间极显著负相关 (P<0.01) ，灌木与其他草本重要值间的相关性不显著 (P>0.05) 。说明紫茎泽兰的生长与灌木或草本间存在微妙的此消彼长的关联，充分显示了紫茎泽兰与当地物种间的竞争事实。 紫茎泽兰种子雨前的种子库为所研究地区绝大部分物种的长久性土壤种子库，本地区种子库的组成物种共有13种，包括灌木和草本。紫茎泽兰占整个种子库储量的61.3%，在长久种子库中占有明显的优势;种子库与植被间相似度为0.31，虽然种子库中物种均为植被的组成成分，但是植被中绝大多数物种种子未检测出，种子库中出现的物种与该物种本身的生理生态特性密切相关。种子雨是种子库的来源，紫茎泽兰种子雨前表层种子储量只占种子雨后的7.4%，中下层储量占33.8%，共占41.2%，即每年仅58.8%的种子在当年雨季萌发，剩余的在土壤中保持休眠状态。依 目前的研究结果，本地植被仅靠自然恢复的可能性不大。 紫茎泽兰种子最适发芽温度为25℃;储藏1.5 a后的种子萌发率有所下降，25℃下萌发率由77%下降为66%;紫茎泽兰种子有良好的休眠机制，对生境的干扰可以促进紫茎泽兰长久土壤种子库的形成，为紫茎泽兰种群补充奠定了基础。稀疏的植被有利于紫茎泽兰种子萌发及幼苗建植，对原生植被的破坏则促进了紫茎泽兰实生苗的补充。因而保护原始生境、减少对原生态系统的破坏，是减少和抑制紫茎泽兰种群补充的有效途径。 紫茎泽兰 (克隆) 离体无性繁殖的部位为根颈部分，其他离体部分没有无性繁殖能力或很弱;灌丛和路域生境下的离体部分在给予相同培养条件下，克隆繁殖效益有差别，灌丛生境萌芽较早，而主茎和叶生长速度较慢。拔除干扰对于紫茎泽兰萌生新枝具有刺激作用，对紫茎泽兰植株上部的割取类似于给它提供更新复壮的机会，因此在紫茎泽兰防治过程中一定要注意将其拔除干净，以防后患。

Adaptive evolution of primate TRIM5 alpha, a gene restricting HIV-1 infection

Recent studies showed that nonhuman primate TRIM5 alpha can efficiently block HIV-1 infection in human cell lines. It can also restrict other retroviruses, therefore, suggested as a general defender against retrovirus infection. Here, we present an evolutionary analysis of TRIM5 alpha in primates. Our results demonstrated that TRIM5a has been evolving rapidly in primates, which is likely caused by Darwinian positive selection. The SPRY domain of TRM5 alpha, which may be responsible for recognition of incoming viral capsids showed higher nonsynonymous/synonymous substitution ratios than the non-SPRY domain, indicating that the adaptive evolution of TRIM5a ill primates might be an innate strategy developed in defending retrovirus infection during primate evolution. In addition, the comparative protein sequence analysis suggested that the amino acid substitution pattern at a single site (344R/Q/P) located in the SPRY domain may explain the differences in Susceptibilities of HIV-1 infection in diverse primate species. (c) 2005 Elsevier B.V. All rights reserved.

Molecular docking and 3D-QSAR study of pyranmycin derivatives against 16S rRNA A site

To understand pharmacophore properties of pyranmycin derivatives and to design novel inhibitors of 16S rRNA A site, comparative molecular field analysis (CoMFA) approach was applied to analyze three-dimensional quantitative structure-activity relationship (3D-QSAR) of 17 compounds. AutoDock 3.0.5 program was employed to locate the orientations and conformations of the inhibitors interacting with 16S rRNA A site. The interaction mode was demonstrated in the aspects of inhibitor conformation, hydrogen bonding and electrostatic interaction. Similar binding conformations of these inhibitors and good correlations between the calculated binding free energies and experimental biological activities suggest that the binding conformations of these inhibitors derived from docking procedure were reasonable. Robust and predictive 3D-QSAR model was obtained by CoMFA with q(2) values of 0.723 and 0.993 for cross-validated and noncross-validated, respectively. The 3D-QSAR model built here will provide clear guidelines for novel inhibitors design based on the Pyranmycin derivatives against 16S rRNA A site. (c) 2005 Elsevier B.V. All rights reserved.

A QSAR study of the antiallergic activities of substituted benzamides and their structures

Multiple regression analysis (MRA) and comparative molecular field analysis (CoMFA) have been used in studies of the correlation between the antiallergic activities of substituted benzamides and their structures. The results achieved using Coh IFA based on 3D factors are much better than those obtained using MRA based on mainly 2D structural information. The CoMFA results reveal that the steric effects are more important than the electrostatic effects for the activities of substituted benzamides. (C) 1999 Elsevier Science B.V. All rights reserved.

新型抗爱滋病药物吡喃酮类化合物的三维定量构效关系研究

吡喃酮类化合物是抗爱滋病的一类新药， 本文用CoMFA(Comparative Molecular Field Analysis)方法对19个吡喃酮类化合物的三维构效关系进行了研究， 较详细地探讨了分子的重叠方式， 并选用了其他有关的一些最优条件， 得到满意的结果。

Studies on three-dimensional quantitative structure-activity relationships between the structures of N-nitroso compounds and their carcinogenic activities

Comparative molecular fiels analysis (CoMFA) has been applied to the studies of the correlation of the N-nitroso compounds and their carcinogenic activities, The comparison of CoMFA results with different lattice spacing and different atom probes was investigated, CoMFA resulted in a quantitative description of the major steric and electrostatic field effects and gave significant new insights to factors governing potency.