Comparative phylogeography of the Yellow River schizothoracine fishes (Cyprinidae): Vicariance, expansion, and recent coalescence in response to the Quaternary environmental upheaval in the Tibetan Plateau

National Natural Science Foundation of China (NSFC) [30225008, 30300036, 30530120]; Key Innovation Plan [KSCX2-SW-106]; National Basic Research Project in China [2005cb422005]; National Natural Science Foundation of China [30600062]

Identification of Differentially Expressed Genes Between Cloned and Zygote-Developing Zebrafish (Danio rerio) Embryos at the Dome Stage Using Suppression Subtractive Hybridization

Comparative analyses of differentially expressed genes between somatic cell nuclear transfer (SCNT) embryos and zygote-developing (ZD) embryos are important for understanding the molecular mechanism underlying the reprogramming processes. Herein, we used the suppression subtractive hybridization approach and from more than 2900 clones identified 96 differentially expressed genes between the SCNT and ZD embryos at the dome stage in zebrafish. We report the first database of differentially expressed genes in zebrafish SCNT embryos. Collectively, our findings demonstrate that zebrafish SCNT embryos undergo significant reprogramming processes during the dome stage. However, most differentially expressed genes are down-regulated in SCNT embryos, indicating failure of reprogramming. Based on Ensembl description and Gene Ontology Consortium annotation, the problems of reprogramming at the dome stage may occur during nuclear remodeling, translation initiation, and regulation of the cell cycle. The importance of regulation from recipient oocytes in cloning should not be underestimated in zebrafish.

Combined effect of surface tension, gravity and van der Waals force induced by a non-contact probe tip on the shape of liquid surface

Aiming at understanding how a liquid film on a substrate affects the atomic force microscopic image in experiments, we present an analytical representation of the shape of liquid surface under van der Waals interaction induced by a non-contact probe tip. The analytical expression shows good consistence with the corresponding numerical results. According to the expression, we find that the vertical scale of the liquid dome is mainly governed by a combination of van der Waals force, surface tension and probe tip radius, and is weekly related to gravity. However, its horizontal extension is determined by the capillary length.

Multi-scale analysis of AFM tip and surface interactions

Thoroughly understanding AFM tip-surface interactions is crucial for many experimental studies and applications. It is important to realize that despite its simple appearance, the system of tip and sample surface involves multiscale interactions. In fact, the system is governed by a combination of molecular force (like the van der Waals force), its macroscopic representations (such as surface force) and gravitational force (a macroscopic force). Hence, in the system, various length scales are operative, from sub-nanoscale (at the molecular level) to the macroscopic scale. By integrating molecular forces into continuum equations, we performed a multiscale analysis and revealed the nonlocality effect between a tip and a rough solid surface and the mechanism governing liquid surface deformation and jumping. The results have several significant implications for practical applications. For instance, nonlocality may affect the measurement accuracy of surface morphology. At the critical state of liquid surface jump, the ratio of the gap between a tip and a liquid dome (delta) over the dome height (y(o)) is approximately (n-4) (for a large tip), which depends on the power law exponent n of the molecular interaction energy. These findings demonstrate that the multiscale analysis is not only useful but also necessary in the understanding of practical phenomena involving molecular forces. (c) 2007 Elsevier Ltd. All rights reserved.

透红外大尺寸氧氟化物玻璃研究

锗酸盐和氟铝酸盐透红外玻璃材料作为窗口或头罩材料具有广泛的应用前景。结合锗酸盐玻璃含有少量水的问题，在成分中引入氟化物，实验表明：随氟化物含量增加．玻璃中羟基含量逐渐降低。同时通过对熔制温度的调整，获得了不合羟基的红外玻璃。针对氟铝酸盐玻璃在冷却过程中易析晶的问题，在氟化物组分中加入少量重金属氧化物TeO2，得到析晶性能好的氧氟铝酸盐玻璃。同时给出了两类红外材料的一些物理、化学性质。

Molecular phylogeny and biogeography of the highly specialized grade schizothoracine fishes (Teleostei : Cyprinidae) inferred from cytochrome b sequences

We recovered the phylogenetic relationships among 23 species and subspecies of the highly specialized grade schizothoracine fishes distributing at 36 geographical sites in the Tibetan Plateau and its Surrounding regions by analyzing sequences of cytochrome b genes. Furthermore, we estimated the possible divergent times among lineages based on a historical geological isolation event in the Tibetan Plateau. The molecular data revealed that the highly specialized grade schizothoracine fishes were not a monophyletic group, but were the same as genera Gymnocypris and Schizogypsis. Our results indicated that the molecular phylogenetic relationships apparently reflected their geographical and historical associations with drainages, namely species from the same and adjacent drainages clustered together and had close relationships. The divergence times of different lineages were well consistent with the rapid uplift phases of the Tibetan Plateau in the late Cenozoic, suggesting that the origin and evolution of schizothoracine fishes were strongly influenced by environment changes resulting from the upheaval of the Tibetan Plateau.

Floral surveys on Gomphonemaceae and Cymbellaceae (Bacillariophyta) from the headwaters of the Yangtze River, Qinghai, China

Gomphonemaceae and Cymbellaceae from the headwaters of the Yangtze River, Qinghai Province, China, comprised 84 taxa belonging to four genera. The dominant species were Gomphonema kaznakowi Mer., G. hedini Hust., G. olivaceum (Lyngbye) Kutz., Cymbella cistula (Ehr.) Kirchn. var. cistula and C. minuta Hilse ex Rabh. var. minuta. Some arctic and alpine forms also occurred, and the following taxa were unique to this region: C. cistula var. asiatica Mer., C. cistula var. capitata Grun., C. yabe Skvortzow var. punctata Li and Shi, G. olivaceum (Lyngbye) Kutzing var. brevistriatum Li and Shi and G. staurophorum (Pant.) Cleve-Euler var. oblongum Li and Shi. Different morphological forms of G. kaznakowi Mer. may be related to the upheaval of the plateau. Species diversity of the diatoms appears to be related not only to macro-environment (e.g., geographic zonation) but also to microhabitat and microclimate.

Characterization of InAs quantum dots on lattice-matched InAlGaAs/InP superlattice structures

Self-assembled InAs quantum dots (QDs) in an InAlGaAs matrix, lattice-matched to InP substrate, have been grown by molecular beam epitaxy (MBE). Transmission electron microscopy (TEM), double-crystal X-ray diffraction (DCXRD) and photoluminescence (PL) are used to study their structural and optical properties. In InAs/InAlGaAs/ InP system, we propose that when the thickness of InAs layer deposited is small, the random strain distribution of the matrix layer results in the formation of tadpole-shaped QDs with tails towards random directions, while the QDs begin to turn into dome-shaped and then coalesce to form islands with larger size and lower density to release the increasing misfit strain with the continuous deposition of InAs. XRD rocking curves showing the reduced strain with increasing thickness of InAs layer may also support our notion. The results of PL measurements are in well agreement with that of TEM images. (C) 2004 Elsevier B.V. All rights reserved.

Shape evolution of Ge/Si(001) islands induced by strain-driven alloying

The shape evolution of Ge/Si(001) islands grown by ultrahigh vacuum chemical vapor deposition were investigated by atomic force microscopy at different deposition rates. We find that, at low deposition rates, the evolution of islands follows the conventional pathway by which the islands form the pyramid islands, evolve into dome islands, and dislocate at a superdome shape with increasing coverage. While at a high deposition rate of 3 monolayers per minute, the dome islands evolve towards the pyramids by a reduction of the contact angle. The presence of the atomic intermixing between the Ge islands and Si substrate at high deposition rate is responsible for the reverse evolution. (C) 2001 American Institute of Physics.

Characteristics of shallow gas hydrate in Okhotsk Sea

Multidisciplinary field investigations were carried out in Okhotsk Sea by R/V Akademik M.A. Lavrentyev (LV) of the Russian Academy of Sciences (RAS) in May 2006, supported by funding agencies from Korea, Russia, Japan and China. Geophysical data including echo-sounder, bottom profile, side-scan-sonar, and gravity core sample were obtained aimed to understand the characteristics and formation mechanism of shallow gas hydrates. Based on the geophysical data, we found that the methane flare detected by echo-sounder was the evidence of free gas in the sediment, while the dome structure detected by side-scan sonar and bottom profile was the root of gas venting. Gas hydrate retrieved from core on top of the dome structure which was interbedded as thin lamination or lenses with thickness varying from a few millimeters to 3 cm. Gas hydrate content in hydrate-bearing intervals visually amounted to 5%-30% of the sediment volume. This paper argued that gases in the sediment core were not all from gas hydrate decomposition during the gravity core lifting process, free gases must existed in the gas hydrate stability zone, and tectonic structure like dome structure in this paper was free gas central, gas hydrate formed only when gases over-saturated in this gas central, away from these structures, gas hydrate could not form due to low gas concentration.

The Obduction of Equatorial 13 degrees C Water in the Pacific Identified by a Simulated Passive Tracer

The obduction of equatorial 13 degrees C Water in the Pacific is investigated using a simulated passive tracer of the Consortium for Estimating the Circulation and Climate of the Ocean (ECCO). The result shows that the 13 degrees C Water initialized in the region 8 degrees N-8 degrees S, 130 degrees-90 degrees W enters the surface mixed layer in the eastern tropical Pacific, mainly through upwelling near the equator, in the Costa Rica Dome, and along the coast of Peru. Approximately two-thirds of this obduction occurs within 10 years after the 13 degrees C Water being initialized, with the upper portion of the water mass reaching the surface mixed layer in only about a month. The obduction of the 13 degrees C Water helps to maintain a cool sea surface temperature year-round, equivalent to a surface heat flux of about -6.0 W m(-2) averaged over the eastern tropical Pacific (15 degrees S-15 degrees N, 130 degrees W-eastern boundary) for the period of integration (1993-2006). During El Nino years, when the thermocline deepens as a consequence of the easterly wind weakening, the obduction of the 13 degrees C Water is suppressed, and the reduced vertical entrainment generates a warming anomaly of up to 10 W m(-2) in the eastern tropical Pacific and in particular along the coast of Peru, providing explanations for the warming of sea surface temperature that cannot be accounted for by local winds alone. The situation is reversed during La Nina years.

松辽盆地长岭断陷火山岩储层识别与勘探目标评价

Changling fault depression is the biggest fault subsidence in south of Songliao Basin. In its Lower Cretaceous Yingcheng and Shahezi formations developed thick source rocks of deep lake facies and developed poly-phase volcanic rock reservoirs as well. In recent years, significant breakthroughs have been obtained in hydrocarbon exploration of volcanic rock reservoir in the different fault depressions in Songliao basin. Lately, I have been involved in hydrocarbon exploration in the Changling rift depression, especially volcanic rock reservoirs and exploration targets research, participating in the deployment of well Yaoshen 1 which gained over 40 × 104m3 natural gas flow. As quick changes of lithology and facies in Changling area in the south of Songliao basin, and the volcanic rock interludes distribution in continental clastic rock and shale in 3D space, so the identification of volcanic rock types and distribution become a difficult problem. Thus, based on the integrated research of the wild outcrop observation, gravity, magnetic and seismic data, geophysical logging, drilling and coring, laboratory test, this paper carried out the reservoir identification, description and prediction of volcanic rocks in Changling fault depression. In this area, this paper analyzed the volcanic rocks litho-facies, the eruption period, and characteristics of cycles. At the same time, tried to know how to use logging, seismic data to separate volcanic rocks from sandstone and shale, distinguish between volcanic reservoir and non-reservoir, distinguish between intermediate-basic and acidic volcanic rocks, and how to identify traps of volcanic rocks and its gas-bearing properties, etc. Also it is summarized forming conditions and distribution of traps, and possible gas-bearing traps were optimized queuing management. Conclusions as follows: There are two faulted basements in Changling fault depression, granite basement in the southeast and upper paleozoic epimetamorphic basement in the northwest. The main volcanic reservoirs developed in Yingcheng period, which was the intermediate-basic and acidic volcanic eruptions, from the south to north by the intermediate-basic to acid conversion. The volcanic vents are gradually young from south to north. According to information of the re-processing 3D seismic data and gravity-magnetic data, the large volcanic vent or conduit was mainly beaded-distributed along the main fault. The volcanic rocks thickness in Yingcheng formation was changed by the deep faults and basement boundary line. Compared with the clastic rocks, volcanic rocks in Changling area are with high resistance and velocity (4900-5800), abnormal Gamma. All kinds of volcanic rocks are with abnormal strong amplitude reflection on the seismic stacked section except tuff. By analyzing the seismic facies characteristics of volcanic rocks, optimizing seismic attributes constrained by logging, using seismic amplitude and waveforms and other attributes divided volcanic rocks of Yingcheng formation into four seismic zones in map. Currently, most volcanic gas reservoirs are fault-anticline and fault-nose structure. But the volcanic dome lithologic gas reservoirs with large quantity and size are the main gas reservoir types to be found.

扬子地区上奥陶－下志留统黑色岩系形成机理

The black rock series of the Upper Ordovician - Lower Silurian in Yangtze area are important source rocks and have exceptional characteristics of sediment, biology, element geochemistry, carbon and oxygen isotope, organic geochemistry and etc. These characteristics are the reflection of important geology events. Due to scarce system research, many problems that relate to the development mechanism of source rocks are not solved. And this restricts the exploration of Oil and gas in South China. In this paper, author studied the palaeo-climate, palaeo-structure and palaeo-environment of the Upper Ordovician - Lower Silurian in Yangtze area by sedimentology, palaeobiology and geochemistry, especially the element geochemistry and isotope geochemistry. The environment model of source rocks is established and some conclusions are drawn. The Upper Ordovician - Lower Silurian sediment types in Yangtze area are mostly black shales, next, mudstone, shell limestone and siltystone. During the Late Ordovician and Earily Silurian periods, a series of big upheaval and depressed are distributed in Yangtze area, and the strata pattern of interphase upheaval and depressed led to Yangtze palaeosea isolated with outside sea. So the stagnant and anoxic environment that are the favorable factor of rich organic black shales sediment is formed in Yangtze area. That Chemical Index of Alteration (CIA) values of the lower Wufeng formation and Longmaxi formation exhibits moderate chemistry weathering suggests they were deposited under the circumstances of the warm and humid climate. However, the large difference of the CIA values of N.extraordinarius-N.ojsuensis biozone suggests that climate is changeful. Therefore, there were two different kinds of climates in the course of the deposition of the Wufeng formation and Longmaxi formation. During the Late Ordovician - Earily Silurian periods, in Yangtze palaeosea, the surface water which is full of rich nutriment and abundant bacterium - algae has high palaeo-productivity that is obvious difference in the different space – time. The content of sulphate changes gradually from the surface water columns to the deep water columns. That is, salinity in the surface water columns is serious low and the salinity in deep water columns is normal. Salinity delamination is favor of the forming of deep anoxic environment. During Wufeng period, the oxidated and low sulfate environment exists in the upper Yangtze palaeosea, while the anoxic and normal salinity environment occurs in the lower Yangtze palaeosea. During the Late Wufeng and Guanyinqiao periods, the steady anoxic environment is replaced by oxidated environment. During the Longmaxi period, layered and anoxic environment recur. In Yangtze area, studies of δ13C of sedimentary organic carbon show a positive δ13C excursion up to 4‰ in the Guanyinqiao stage and then, acute negative excursion in the earily Longmaxi stage. These organic carbon isotopes curve are not only efficient measure of carving up strata borderline, but also reflected the change of originality productivity. These organic carbon isotopes curves showed the process of the enhanced embedding of the global organic carbon. Anoxic event is the main factor of increasing organic carbon embedding speed. And the reduced organic carbon embedding in Hirnantian stage is due to the water column with abundant oxygen. The δ34S values are gradually positive excursion from P.pacificus biozone to N.extraordinarius biozone, and reach the maximum in the Upper Hirnantian stage. Then, the δ34S values are negative excursion. The excursions of δ13C and δ34S reflect the acute change of environment. The formation of source rocks is largely dependent on the nature of organisms from which kerogen is derived and the preservation conditions of organic matter, which are fundamentally dependent on a favourable combination of various elements in which organisms live and are subsequently buried. These elements include palaeoclimate, palaeostructure and palaeoenvironmental conditions. Based on above mentioned circumstance, the coupling connection of source rock and the palaeoclimate, and of palaeostructure and palaeoenvironmental conditions are confirmed, and the “anoxic-marginal depression-photosynthesis” environemental model is established. It is indicated that anoxic played important role in production of organic matter. The produced organic matter was accumulated in marginal depression of the Yangtze area. The photosynthesis is favor of the high productivity. Source rocks have a good perspective, like that of “hot shale” deposited in North Africa.

五台山区义兴寨岩体、车厂－北台岩体地球化学和变质作用及其大地构造意义

There are many Archean TTG grey suites in the Wutaishan area, northern Shanxi Province, China. In the past one hundred years, many geologists have done excellent research work in the Wutaishan and its adjacent regions. However, the TTG suites were almost neglected. Located in the northern slope of Mt. Hengshan-namely the Archean Hengshan Island Arc, intruded the Zhujiafang supercrustal rocks at almost 2.5Ga, the Yixingzhai TTG Suite is originated from partial melting of the ancient lower crust upper mantle by REE and trace elements, and the emplacement occurred in an Archean island arc. The rocks are mainly of tonalitic, I type, and calc-alkaline trends are found in the magmatic evolution. At almost 1.8 Ga, the suite was transformed to be dome-like schists in an arc-arc collision event, and the rocks were metamorphosed to an extent of amphibolitic to granulitic facies. The peak metamorphic condition is of 710-760 ℃/0.68-0.72GPa, and the subsequent cooling history is recorded as 560-620 ℃/0.46-0.60GPa. In the center of the Mt. Wutaishan-known as the Archean Wutaishan Island Arc, intruded the Archean Chechang-Beitai TTG Suite, which is of 2.5Ga old and of trondhjemitic and tonalitic, with coexisting I- and S-types and a trondhjemitic magmatic evolution trend. Through REE and trace elements, the suite is believed to be from the partial melting of the ancient lower crust or upper mantle. The 1.8 Ga collision event also made the suite gneissic and the it was metamorphosed to be amphibolitic facies, whose peak condition is approximately of 680 (±50) ℃/0.7Gpa, and the subsequent cooling process is recorded as 680 (±50) ℃、550(±50) ℃、420(±10) ℃. Crustal growth is fulfilled through magmatic intrusion as well as eruption at about 2.5Ga, arc-arc collision at about 1.8 Ga in the Wutaishan area and its environs. Additionally, the biotite-muscovite and muscovite-plagioclase geothermometers are refined, and the biotite-hornblende geothermometer is developed in this dissertation.

山东莱州金城金矿床构造-流体成矿特征

This paper studied the metallotectonics, altered rocks, altered minerals and fluid inclusions. The conclusions are: (1)The gold deposits in Jiaodong district were formed quickly uplifted tectonic setting which was induced by the Mantle doming in Mesozoic era. (2)Both Jiaojia-type and Linglong-type gold mineralizations were formed in the same tectonic-fluid system. (3) The Ar-Ar age of the earlier stage of the gold mineralization is 114～116Ma. (4)The development of the plaiting ore-control tectonic system underwent four stagesrcounterclockwise ductile compresso-shearing, clockwise brittle tenso-shearing and counterclockwise brittle compresso-shearing and brittle normal faulting after mineralization. (5)The mineralization has five stages: quartz and k-feldspar stage, quartz and ferro-carbonate and pyrite stage, quartz and chalcopyrite stage, pyrite and sericite and quartz stage and carbonate stage, and they make up four ore-types: red ore, vein ore, mottled ore and grey ore. (6) The features of mineralizations and ore-forming fluids in different stages are different. But the ore-forming fluids are rich in Si, Fe, P_2O_5, H_2O, CO_2, SO_4~(2-), K~+, Na~+, Ca~(2+) and Cl~- in general and their salinities are from 4 to 18 NaClwt%. (7) The ore-forming fluids came mainly from the Mantle in early stage, then mainly from magma, and mainly from meteoric water in the last stage. (8) Au in the ore-forming fluid was mainly carried in the form of complex of Au and S. (9)The temperature of ore-forming fluid is from 350℃ to 120℃and its pressure is from 20MPa to 38MPa. (10)The gold vein composed by quartz, ferro-carbonate, chalcopyrite and pyrite (vein ore) was filled in the tensional fracture in the top of the magma dome. The disseminated ore bodies composed by pyrite, sericite and quartz (grey ore) was metasomatized in the shearing fault which developed along the contact zone between Linglong intrusive body and Jiaodong Group, which is placed in the flank top of magma dome. In the joint and fracture induced by the shearing fault which developed along the contact zone between Linglong intrusive body and Jiaodong Group, veiniet and stockwork ore (red ore) and veinlet-disseminated ore (mottled ore) composed by quartz and pyrite was formed. (ll)Fluid boiling maybe one of the form of the ore-forming substances precipitation.