Deletion of yeast CWP genes enhances cell permeability to genotoxic agents

We have previously reported the development of a novel genotoxic testing system based on the transcriptional response of the yeast RNR3-lacZ reporter gene to DNA damage. This system appears to be more sensitive than other similar tests in microorganisms, and is comparable with the Ames test. In an effort to further enhance detection sensitivity, we examined the effects of altering major cell wall components on cell permeability and subsequent RNR3-lacZ sensitivity to genotoxic agents. Although inactivation of single CWP genes encoding cell wall mannoproteins had little effect, the simultaneous inactivation of both CWP1 and CWP2 had profound effects on the cell wall structure and permeability. Consequently, the RNR3-lacZ detection sensitivity is markedly enhanced, especially to high molecular weight compounds such as 4-nitroquinoline-N-oxide (> sevenfold) and phleomycin (> 13-fold). In contrast, deletion of genes encoding representative membrane components or membrane transporters had minor effects on cell permeability. We conclude that the yeast cell wall mannoproteins constitute the major barrier to environmental genotoxic agents and that their removal will significantly enhance the sensitivity of RNR-lacZ as well as other yeast-based genotoxic tests.

植物14-3-3基因家族的进化和功能分析

14-3-3蛋白家族结构非常保守，被认为广泛存在于所有真核生物的各组织器官中。已有研究表明，14-3-3蛋白可以和上百种蛋白进行相互作用,作为许多细胞进程的重要调节因子参与植物生长发育、细胞周期调节、细胞凋亡和信号转导等多个调控网络。植物14-3-3蛋白家族包括两大类：Epsilon group和Non-epsilon group。我们对这两类蛋白序列进行了进一步的分析，发现这两类蛋白有明显的更小亚类分布，并且不同的亚类包含有不同的模体。从对水稻和拟南芥中的14-3-3基因的分析结果来看，这两类基因在染色体上的分布以及外显子数目明显不同，我们认为这两类蛋白有着不同的进化历史。达尔文正选择在蛋白进化过程中起着很重要的作用，我们对两类蛋白受到的正选择进行分析，分别发现了一些受到正选择的位点，这些位点可能在两类蛋白的进化过程中起着关键作用。水稻是最主要的粮食作物之一，水稻14-3-3基因包含8个成员：GF14a、GF14b、GF14c、GF14d、GF14e、GF14f、GF14g和GF14h。我们选取其中的OsGF14c作为研究对象，对水稻14-3-3的功能做一定探讨。OsGF14c基因位于水稻8号染色体上，cDNA全长1154bp,编码256个氨基酸。序列分析表明该基因与酵母同源基因BMH2有71%的同源性，我们将OsGF14c转入BMH2缺陷型酵母中，发现可以互补酵母14-3-3缺陷的表型。同时对OsGF14c所做的酵母双杂交实验表明，蛋白本身在体外可以形成同源二聚体。GFP融合基因稳定表达结果显示，OsGF14c定位在细胞质中。为了更好的研究该基因的功能，我们通过构建的过表达载体异源转化拟南芥，得到纯合体后我们进行了一系列的胁迫和激素处理。激素、PEG8000、LiCl和甘露醇处理的植株均未表现出明显的表型，而NaCl、KCl处理后的植株表现出盐敏感的表型。

Frog skins keep redox homeostasis by antioxidant peptides with rapid radical scavenging ability

The question of how amphibians can protect themselves from reactive oxygen species when exposed to the sun in an oxygen-rich atmosphere is important and interesting, not only from an evolutionary viewpoint, but also as a primer for researchers interested in mammalian skin biology, in which such peptide systems for antioxidant defense are not well studied. The identification of an antioxidant peptide named antioxidin-RL from frog (Odorrana livida) skin in this report supports the idea that a peptide antioxidant system may be a widespread antioxidant strategy among amphibian skins. Its ability to eliminate most of the 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) radical tested within 2 s, which is much faster than the commercial antioxidant factor butylated hydroxytoluene, suggests that it has a potentially large impact on redox homeostasis in amphibian skins. Cys10 is proven to be responsible for its rapid radical scavenging function and tyrosines take part in the binding of antioxidin-RL to radicals according to our nuclear magnetic resonance assay. (C) 2010 Elsevier Inc. All rights reserved.

Relaxation of yeast mitochondrial functions after whole-genome duplication

Mitochondria are essential for cellular energy production in most eukaryotic organisms. However, when glucose is abundant, yeast species that underwent whole-genome duplication (WGD) mostly conduct fermentation even under aerobic conditions, and most can

A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand

Recent transcription profiling studies have revealed an unexpectedly large proportion of antisense transcripts in eukaryotic genomes. These antisense genes seem to regulate gene expression by interacting with sense genes. Previous studies have focused on the non-coding antisense genes, but the possible regulatory role of the antisense protein is poorly understood. In this study, we found that a protein encoded by the antisense gene ADF1 acts as a transcription suppressor, regulating the expression of sense gene MDF1 in Saccharomyces cerevisiae. Based on the evolutionary, genetic, cytological and biochemical evidence, we show that the protein-coding sense gene MDF1 most likely originated de novo from a previously non-coding sequence and can significantly suppress the mating efficiency of baker's yeast in rich medium by binding MAT alpha 2 and thus promote vegetative growth. These results shed new light on several important issues, including a new sense-antisense interaction mechanism, the de novo origination of a functional gene, and the regulation of yeast mating pathway.

Yeast基因下游二级结构与多聚腺苷作用信号

形成真核生物mRNA 3^末端的多聚腺苷(poly (A))作用涉及前体mRNA下游的三个元件:效率元件(EE)、定位元件(PE)以及实际的剪切和poly(A)作用位点,实验研究提出了一些EE和PE的碱基序列组成。对180个Yeast基因下游(终止密码子后200个碱基)二级结构进行的详细分析显示,约86%的EE、89%的PE与二级结构中碱基非配对的环(发夹环、膨胀环、内环或多分支环)区或连接单链区有关。这个结果提示,反式因子对EE和PE的识别和作用在一定程度上有赖于EE和PE的二级结构特征。借助mRNA二级结构可以提高对EE和PE位点预测的准确性。

Murine MyaK, a member of a family of yeast YAK1-related genes, is highly expressed in hormonally modulated epithelia in the reproductive system and in the embryonic central nervous system

We have cloned a mouse homologue (designated Myak) of the yeast protein kinase YAK1. The 1210 aa open reading frame contains a putative protein kinase domain, nuclear localization sequences and PEST sequences. Myak appears to be a member of a growing family of YAK1-related genes that include Drosophila and human Minibrain as well as a recently identified rat gene ANPK that encode a steroid hormone receptor interacting protein. RNA blot analysis revealed that Myak is expressed at low levels ubiquitously but at high levels in reproductive tissues, including testis, epididymis, ovary, uterus, and mammary gland, as well as in brain and kidney. In situ hybridization analysis on selected tissues revealed that Myak is particularly abundant in the hormonally modulated epithelia of the epididymis, mammary gland, and uterus, in round spermatids in the testis, and in the corpora lutea in the ovary, Myak is also highly expressed in the aqueduct of the adult brain and in the brain and spinal cord of day 12.5 embryos, Mol. Reprod. Dev. 55:372-378, 2000. (C) 2000 Wiley-Liss, Inc.

Secondary structure of yeast genomic downstream region and polyadenylation signals

Polyadenylation of 3 ' -forming in eukaryote concerns three elements located in precursor mRNA downstream region: efficiency element (EE), position element (PE) and the actual site for cleavage and polyadenylation. Several base sequences of EE and PE have