同步加速器磁场电源控制系统的优化研究

CSR控制系统是一个基于网络的分布式控制系统，它是由许多分控制系统组成。磁场电源控制系统是CSR控制系统中很重要的一部分，它是一个波形发生、数据采集系统。所有依赖波形控制的系统都可以由它来控制。波形的参数由物理学家根据实验需要计算得出。因为加速器所有的运行状态都被电源所控制，所以控制系统的直接控制对象就是磁场电源。在整个控制系统中最重要的就是控制波形的同步和波形的精度，这是同步加速器控制系统的关键所在。波形的同步由同步时序系统控制，这是CSR成功运行的决定条件。数据的采集、电源状态的监测由数据采集模块CPLD负责完成，与前端ARM控制器结合，形成数据的上行通道。采集到的数据均存放在中央控制室的数据库中，以供参考、后期分析及应用。论文论述了对CSR磁场电源控制系统、时序系统和软件系统的设计实现及优化改进

CSR事例同步系统

CSR控制系统是一个大型的基于Web的多层分布式控制系统，整个控制系统要在事例同步系统的指挥下在合适的时间作合适的事。CSR事例同步系统是CSR控制系统的最高指令单元和定时单元，它是加速器运行的基础和核心。我们自主设计研发的CSR事例同步系统是以事例为核心的末端定时同步系统。事例由同步服务器发出，被设备控制执行系统接收，相关数据信息被存储在数据库中。依据物理实验要求，编排好运行周期事例序列，事例间的时间间隔经过严格测算，同时所有设备控制执行系统建立本地事例表和对应的延时值。当周期启动的事例被发出，所有系统进行时间校准，将各自的频率和相位调整到所需要的位置。随后这个事例序列被同步服务器依次发出，设备控制执行系统在事例指令到来时解译事例编码，如果事例符合，则在符合事例对应的延时时间后开始执行事例编码指定的动作。在运行周期内，同步服务器只发事例序列，不接受任何反馈。数据和信号沿数据上行树和数据下行树在数据库系统和设备控制执行系统间传输。系统同步运行过程被精确到纳秒级，从而实现CSR的同步控制。本文对事例同步系统的总体结构和具体实现作了详细论述，详细分析了CSR周期，重点介绍了同步服务器的工作原理和实现方法。对事例同步系统的事例产生、事例发射、事例接收、事例解译和IOC等各重要部件的原理及软硬件设计做了系统论述，并给出现场及试验平台的测试结果。同时给出了几个CSR事例同步系统的成功应用实例。通过现场测试与分析，本系统完全能够满足HIRFL-CSR大科学工程对同步控制系统的要求。本文的创新点主要有，在加速器控制领域：（1）利用高速FPGA数字技术实现事例同步系统的核心模块；（2）采用先进的ARM+DSP+FPGA的嵌入式控制方式实现了事例同步IOC

长白山红松针阔混交林CO_2通量的日变化与季节变化

Diurnal and seasonal variation of CO_2 flux above the Korean Pine and broad_leaved mixed forest in Changbai Mountain were expounded according to the measurements by eddy covariance technique. The results showed that the diurnal variation during growing season was closely correlated with photosynthetically active radiation (PAR). The forest assimilated the CO_2 in daytime and released in night. The maximum uptake occurred about 9 o'clock of local time in clear day. Assimilation was synchronous to PAR in cloudy day. The night respiration increased with increasing of shallow soil temperature. The CO_2 flux also had obviously seasonal variation that was mainly controlled by temperature. Relationship between monthly net exchange of CO_2 and monthly mean air temperature fit cubic equation. Remarkable uptake occurred in blooming growing season,May to August,and weak respiration occurred in dormant season,October to March,and relatively big release happed in October. Assimilation and respiration were nearly balanced during the transition of growing and dormant seasons. The annual carbon uptake of the ecosystem was-184 gC·m -2 .

传感器网络中基于自动校准的长周期时间同步算法

针对现有时间同步协议在能耗和通信负载方面存在的不足,提出了一种周期同步和自动校准相结合的时间同步算法SLTS.该算法的周期同步采用预告消息机制来实现,而自动校准则是在周期同步的间歇期间,各节点根据晶体振荡器的频率特性来修正自己的逻辑时间,尽可能与标准时间保持一致,从而延长周期同步的时间间隔.实验结果表明SLTS算法可以在保证用户精度需求的前提下大幅降低同步算法的执行频率,在能耗和通信负载方面具有较好的性能.

MPICH同步通信程序死锁检测研究

MPI是分布式内存并行处理计算机上开发基于消息传递应用系统的事实标准，主要用于并行计算机和集群的高性能运算，MPICH是其重要实现。MPI程序可能发生死锁，而且调试困难，国际上主要采用运行时动态调试方法。但是，这些方法的致命缺陷是发现死锁后，死锁造成的损失已无可挽回；况且，它们无法用于全节点空间上。为解决这些问题，针对MPICH点对点同步通信程序，本文提出了一种静态方法。 根据静态方法程序建模的需要，开发了一种基于JavaCC技术的编译器前端工具，该工具对MPICH程序进行编译产生程序语法树。 提出一种MPICH同步通信程序的建模方法，并设计出一种模型构造器遍历语法树来构造模型。根据程序性质，模型构造器可构造出三种模型：无参数模型，一次参数化模型和二次参数化模型。无参数模型不含任何参数；一次参数化模型含有一个并行节点ID的参数；二次参数化模型含有并行节点ID以及并行节点数量两个参数。构造出一种优化算法将全节点空间上的一次参数化模型转化为无参数模型之后进行死锁判定；对二次参数化模型，采用穷举方法转化为无参数模型后进行死锁判定。 针对非对称条件程序死锁性质的不确定性，提出对称条件假设。根据该假设，无参数模型被转化为循环嵌套模型之后再进行死锁判定。 为提高循环嵌套模型死锁判定效率，提出比例方程组概念。设计出建立并求解比例方程组的线性时空复杂度算法。比例方程组无解有两种情况：比例方程组包含第一类或者第二类比例冲突。提出比例冲突相关的方法，在常数时间内通过分析循环模型中产生冲突的几个循环的循环次数是否满足死锁条件来判断死锁。在比例方程组有解的情况下，给出了一种算法截取该模型的常数个循环片断进行死锁判定。为对循环片断进行死锁判定，开发了一种线性时空复杂度算法将片断顺序化后进行死锁判定。 为进一步提高算法效率，对Java哈希表类库进行了优化，使该库能够完全避免由于存取比例数据而产生的哈希碰撞。 理论证明，实验表明，该方法能够在运行前，最坏情况下以线性时空复杂度，判定点对点MPICH同步通信程序在全节点空间的死锁性质。

Local histogram based geometric invariant image watermarking

Compared with other existing methods, the feature point-based image watermarking schemes can resist to global geometric attacks and local geometric attacks, especially cropping and random bending attacks (RBAs), by binding watermark synchronization with salient image characteristics. However, the watermark detection rate remains low in the current feature point-based watermarking schemes. The main reason is that both of feature point extraction and watermark embedding are more or less related to the pixel position, which is seriously distorted by the interpolation error and the shift problem during geometric attacks. In view of these facts, this paper proposes a geometrically robust image watermarking scheme based on local histogram. Our scheme mainly consists of three components: (1) feature points extraction and local circular regions (LCRs) construction are conducted by using Harris-Laplace detector; (2) a mechanism of grapy theoretical clustering-based feature selection is used to choose a set of non-overlapped LCRs, then geometrically invariant LCRs are completely formed through dominant orientation normalization; and (3) the histogram and mean statistically independent of the pixel position are calculated over the selected LCRs and utilized to embed watermarks. Experimental results demonstrate that the proposed scheme can provide sufficient robustness against geometric attacks as well as common image processing operations. (C) 2010 Elsevier B.V. All rights reserved.

Local Feature Based Geometric-Resistant Image Information Hiding

Watermarking aims to hide particular information into some carrier but does not change the visual cognition of the carrier itself. Local features are good candidates to address the watermark synchronization error caused by geometric distortions and have attracted great attention for content-based image watermarking. This paper presents a novel feature point-based image watermarking scheme against geometric distortions. Scale invariant feature transform (SIFT) is first adopted to extract feature points and to generate a disk for each feature point that is invariant to translation and scaling. For each disk, orientation alignment is then performed to achieve rotation invariance. Finally, watermark is embedded in middle-frequency discrete Fourier transform (DFT) coefficients of each disk to improve the robustness against common image processing operations. Extensive experimental results and comparisons with some representative image watermarking methods confirm the excellent performance of the proposed method in robustness against various geometric distortions as well as common image processing operations.

Robustness and Coherence of a Three-Protein Circadian Oscillator: Landscape and Flux Perspectives

Three-protein circadian oscillations in cyanobacteria sustain for weeks. To understand how cellular oscillations function robustly in stochastic fluctuating environments, we used a stochastic model to uncover two natures of circadian oscillation: the potential landscape related to steady-state probability distribution of protein concentrations; and the corresponding flux related to speed of concentration changes which drive the oscillations. The barrier height of escaping from the oscillation attractor on the landscape provides a quantitative measure of the robustness and coherence for oscillations against intrinsic and external fluctuations. The difference between the locations of the zero total driving force and the extremal of the potential provides a possible experimental probe and quantification of the force from curl flux. These results, correlated with experiments, can help in the design of robust oscillatory networks.

Cultivation of the intertidal brown alga Hizikia fusiformis (Harvey) Okamura: mass production of zygote-derived seedlings under commercial cultivation conditions, a case study experience

Mariculture of the brown alga Hizikia fusiformis (Harvey) Okamura as an export-oriented human food has been there more for than 20 years in China. It is now one of the five major farmed algal species along the Chinese coast. Stable and sufficient supply of young seedlings for scaling up the cultivation has been a problem throughout the farming history of this species due to the unique dioecious life cycle and relatively short time window of sexual reproduction in nature. These two factors led to a practical difficulty in obtaining zygotes at identical developmental stage in viable amounts for seedling production. A key solution to this problem is to control the synchronization of the receptacle development and to realize the simultaneous discharge of male and female gametes, such that the fertilization rate could be greatly enhanced. Focusing on one of the farmed populations in this report, we present our results on mass production of seedlings using the synchronization technique on a large scale performed in 2007. Totally 5.5 hundred million embryos were obtained from 100 kg female sporophytes. The seedlings were raised up to 3.5 mm in length in greenhouse tanks over a month and were further grown in open sea for over 3 months at two experimental sites. The success of mass production of seedlings in this alga helped to lay the basis for future trials in other species in the genus of Sargassum that have identical life cycle.

Cultivation of the brown alga Hizikia fusiformis (Harvey) Okamura: enhanced seedling production in tumbled culture

The reuse of holdfasts for regeneration of young seedlings or using wild juvenile plants as the seedling source has played the major role in commercial cultivation of the brown alga Hizikia fusiformis in East Asia over the past 20 years. The possibility of employing zygote-derived germlings for producing seedlings has been discussed in the literature, but has not yet become a reality. Three main obstacles have limited the use of zygotes as a main source of seedlings, (1) the dioecious nature of the algal life cycle which may lead to asynchronous male and female receptacle development and thus different timing of egg and spermatozoa expulsion, (2) the low attachment rate when using zygote-derived germlings with developed rhizoids from wild parental plants for seeding production, and (3) the problem of culturing young germlings in regions where water temperature is high in summer. In this investigation, shifting the timing of receptacle formation earlier than in nature was performed by tumbling the algae in a long-day tank (16-h light per day). Synchronization of egg and spermatozoa expulsion and thereafter fertilization were conducted in indoor tanks. Receptacle formation in constant long days could be shifted by 20 days earlier than in plants cultured on long lines in the open sea, or I month earlier than in plants growing on intertidal rocks. Synchronized expulsion of eggs and spermatozoon led to a high rate of fertilization. This was achieved by tumbling the male and female receptacle-bearing branchlets in the same tank at low density in high irradiance. In two independent trials, a total of 1,400,000 zygote-derived germlings were obtained from 620 g (fresh weight) female sporophytes. The germlings shed from the receptacles were at an identical developmental stage indicating high synchronization of expulsion of eggs and spermatozoon followed by fertilization. Approximately 63% ( +/-9.6%) of the germlings were shed from the receptacle between 16 and 24 It after fertilization and 20% ( +/-11.9%) remained on the receptacle for 3 days after fertilization. Germlings were seeded on string collectors before rhizoids started to elongate and the attachment efficiency was enhanced. Young seedlings reached 800 ( +/-50) mum in length in 25 days at 25 degreesC before they were transferred to open sea cultivation. These results provide the basis of a practical way of seedling production by use of zygote-derived germlings in the commercial cultivation of Hizikia fusiformis. (C) 2004 Elsevier B.V All rights reserved.

褐牙鲆和夏牙鲆杂交的遗传学研究

在进行褐牙鲆(Paralichthys olivaceus)和夏牙鲆(P. dentatus)的杂交及回交的基础上，利用染色体计数、AFLP、线粒体DNA和核基因部分序列等分析方法对褐牙鲆和夏牙鲆正反交和回交子代进行遗传学研究，探讨了褐牙鲆和夏牙鲆正反交不对称的遗传学基础及其生殖隔离现象，主要结果如下： 1. 褐牙鲆和夏牙鲆正反交的活力是不对称的，褐牙鲆♀×夏牙鲆♂的正交杂种活力正常，能够正常存活、生长和发育，而反交夏牙鲆♀×褐牙鲆♂的杂种体态畸形，孵出后不久死亡。染色体计数发现正交个体的染色体核型与父母本一致，均为48条端部着丝粒染色体；而反交杂种比亲本缺失了两条染色体，仅为46条端部着丝粒染色体，这表明反交杂种为非整倍体。进一步利用AFLP方法对遗传物质从亲本到子代的传递进行了分析，结果显示正反交遗传物质的传承方式存在很大差异。几乎所有亲本的AFLP位点(97.71%)均传递到正交子代。然而，仅有86.64%的AFLP位点从亲本传递到反交子代，反交子代中亲本位点的丢失比例显著高于正交子代和亲本种内交配子代的比例 ( P < 0.05)，这可能与反交杂种染色体丢失有关。进一步分析发现，杂交组中的偏分离标记高于对照组，尽管经2检验发现其差异并不显著 (P > 0.05)。 2. 对于可以成活的正交杂种进行培育达到性成熟后，利用褐牙鲆和夏牙鲆的精液分别与雌性杂交鲆的卵子进行母本回交实验。通过统计受精率、孵化率及杂交适合度值（CFM，受精率和孵化率相乘获得的结果）评估褐牙鲆和夏牙鲆的杂交可适度，结果表明正交及各回交组中的CFM值均显著低于褐牙鲆自交(P < 0.05)。同时，利用AFLP对回交子代基因组的变化进行了分析，发现回交中不仅存在亲本位点的丢失(褐牙鲆回交子代-回交1, 3.96%; 夏牙鲆回交子代-回交2, 6.03%)的现象，也存在非亲位点(回交1, 5.63%; 回交2, 3.28%)的现象。而且，两回交组合分别有27.40%和31.18%的AFLP标记偏离孟德尔遗传。 3. 利用线粒体DNA 16S rDNA、COⅠ基因及核基因rag1的部分序列对正反交及回交子代的线粒体及核DNA的传承进行分析，发现正反交子代的16S rDNA和线粒体DNA片段的同源性和母本一致，各回交组中16S rDNA和COⅠ基因片段与褐牙鲆的同源性较高 (98%)，这表明褐牙鲆和夏牙鲆杂交及回交遵循母性遗传规律。但在回交子代中发现16S rDNA和COⅠ基因具有多种单倍型。褐牙鲆和夏牙鲆的rag1基因具有高度的保守性，但在正交子代中发现rag1多种单倍型。 4. 进一步利用线粒体DNA的16S rDNA、COⅠ基因的部分序列对8种重要海水养殖鱼类的系统进化分析，计算了其种间的遗传距离。根据这几种鲆鲽鱼的杂交是否可行的试验结果，评价种间遗传距离与杂交可适度的关系，结果表明，这8种鲆鲽鱼类的种间遗传距离与杂交可适度呈显著的负相关 (r2 = 0.805，P < 0.01)，即种间遗传分化越大，杂交成功的可能性越小，这表明鲆鲽鱼类中可能存在物种进化的不亲和钟 (Incompatibility clock)。

Origin of mitochondrial DNA diversity of domestic yaks

Background: The domestication of plants and animals was extremely important anthropologically. Previous studies have revealed a general tendency for populations of livestock species to include deeply divergent maternal lineages, indicating that they were domesticated in multiple, independent events from genetically discrete wild populations. However, in water buffalo, there are suggestions that a similar deep maternal bifurcation may have originated from a single population. These hypotheses have rarely been rigorously tested because of a lack of sufficient wild samples. To investigate the origin of the domestic yak (Poephagus grunnies), we analyzed 637 bp of maternal inherited mtDNA from 13 wild yaks (including eight wild yaks from a small population in west Qinghai) and 250 domesticated yaks from major herding regions.Results: The domestic yak populations had two deeply divergent phylogenetic groups with a divergence time of > 100,000 yrs BP. We here show that haplotypes clustering with two deeply divergent maternal lineages in domesticated yaks occur in a single, small, wild population. This finding suggests that all domestic yaks are derived from a single wild gene pool. However, there is no clear correlation of the mtDNA phylogenetic clades and the 10 morphological types of sampled yaks indicating that the latter diversified recently. Relatively high diversity was found in Qinghai and Tibet around the current wild distribution, in accordance with previous suggestions that the earliest domestications occurred in this region. Conventional molecular clock estimation led to an unrealistic early dating of the start of the domestication. However, Bayesian estimation of the coalescence time allowing a relaxation of the mutation rateConclusion: The information gathered here and the previous studies of other animals show that the demographic histories of domestication of livestock species were highly diverse despite the common general feature of deeply divergent maternal lineages. The results further suggest that domestication of local wild prey ungulate animals was a common occurrence during the development of human civilization following the postglacial colonization in different locations of the world, including the high, arid Qinghai-Tibetan Plateau.

Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau

The Ligularia-Cremanthodium-Parasenecio (L-C-P) complex of the Tussilagininae (Asteraceae: Senecioneae) contains more than 200 species that are endemic to the Qinghai-Tibetan Plateau in eastern Asia. These species are morphologically distinct; however, their relationships appear complex. A phylogenetic analysis of members of the complex and selected taxa, of the tribe Senecioneae was conducted using chloroplast (ndhF and trnL-F) and nuclear (ITS) sequences. Phylogenetic trees were constructed from individual and combined datasets of the three different sequences. All analyses suggested that Doronicum, a genus that has been included in the Tussilagininae, should be excluded from this subtribe and placed at the base of the tribe Senecioneae. In addition, the Tussilagininae should be broadly circumscribed to include the Tephroseridinae. Within the expanded Tussilagininae containing all 13 genera occurring in eastern Asia, Tussilago and NSPetasites diverged early as a separate lineage, while the remaining I I genera comprise an expanded L-C-P complex clade. We suggest that the L-C-P clade, which is largely unresolved, most likely originated as a consequence of an explosive radiation. The few monophyletic subclades identified in the L-C-P clade with robust support further suggest that some genera of Tussilagininae from eastern Asia require generic re-circumscriptions given the occurrence of subclades containing species of the same genus in different parts of the phylogentic tree due to homoplasy of important morphological characters used to delimit them. Molecular-clock analyses suggest that the explosive radiation of the L-C-P complex occurred mostly within the last 20 million years, which falls well within the period of recent major uplifts of the Qinghai-Tibetan Plateau between the early Miocene to the Pleistocene. It is proposed that significant increases in geological and ecological diversity that accompanied such uplifting, most likely promoted rapid and continuous allopatric speciation in small and isolated populations, and allowed fixation or acquisition of similar morphological characters within unrelated lineages. This phenomenon, possibly combined with interspecific diploid hybridization because of secondary sympatry during relatively stable stages between different uplifts, could be a major cause of high species diversity in the Qinghai-Tibetan Plateau and adjacent areas of eastern Asia. (c) 2005 Elsevier Inc. All rights reserved.

Molecular systematics and biogeography of Crawfurdia, Metagentiana and Tripterospermum (Gentianaceae) based on nuclear ribosomal and plastid DNA sequences

Background and Aims The systematic position of the genus Metagentiana and its phylogenetic relationships with Crawfurdia, Gentiana and Tripterospermum have not been explicitly addressed. These four genera belong to one of two subtribes (Gentianinae) of Gentianeae. The aim of this paper is to examine the systematic position of Crawfurdia, Metagentiana and Tripterospermum and to clarify their phylogenetic affinities more clearly using ITS and trnL intron sequences.Methods Nucleotide sequences from the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the plastid DNA trnL (UAA) intron were analysed phylogenetically. Ten of fourteen Metagentiana species were sampled, together with 40 species of other genera in the subtribe Gentianinae.Key Results The data support several previously published conclusions relating to the separation of Metagentiana from Gentiana and its closer relationships to Crawfurdia and Tripterospermum based on studies of gross morphology, floral anatomy, chromosomes, palynology, embryology and previous molecular data. The molecular clock hypothesis for the tested sequences in subtribe Gentianinae was not supported by the data (P < 0.05), so the clock-independent non-parametric rate smoothing method was used to estimate divergence time. This indicates that the separation of Crawfurdia, Metagentiana and Tripterospermum from Gentiana occurred about 11.4-21.4 Mya (million years ago), and the current species of these three genera diverged at times ranging from 0.4 to 6.2 Mya.Conclusions The molecular analyses revealed that Crawfurdia, Metagentiana and Tripterospermum do not merit status as three separate genera, because sampled species of Crawfurdia and Tripterospermum are embedded within Metagentiana. The speciation and rapid radiation of these three genera is likely to have occurred in western China as a result of upthrust of the Himalayas during the late Miocene and the Pleistocene.

VRTX嵌入式实时多任务操作系统及其在机器人控制器中的应用

实时计算机系统在很多领域都发挥着重要的作用。该文介绍了一种嵌入式实时多任务操作系统VRTXsa的特点、任务调度、中断处理、同步机制以及这种操作系统在机器人控制器中的具体应用。