Polarization multiplexing holographic optical recording of a new photochromic diarylethene

A new unsymmetrical photochromic diarylethene 1a is synthesized, and the photochromic properties of it are also investigated. The compound exhibits good photochromism with UV/ visible light irradiation. Compound 1a in polymethyl methacrylate ( PMMA ) film changes color upon 313- nm light irradiation from colorless to blue, in which the absorption maximum is observed at 587 nm. Photon- mode polarization multiplexing holographic optical recording is performed successfully using this compound as a recording medium. In the diarylethene 1b/ PMMA film, polarization multiplexing hologram recording and retrieval, and a combination with the angular multiplexing scheme, are demonstrated systematically. The results indicate that recording capacity can be significantly improved with the combined method of polarization and angular multiplexing holographic recording. (C) 2008 Society of Photo- Optical Instrumentation Engineers.

三维定量结构-性质/活性相关性研究

该研究中,建议了一些新的方法,并且应用到QSAR/QSPR研究中,较好的预测了化合物的活性.研究工作主要集中在如下几个方面:[1]用相似度矩阵构造数学模型,预测化合物的活性.相似度矩阵是通过提取分子三维结构特征—广义二面角,原子三角和原子对空间距离来得到.[2]在三维空间对分子进行投影,计算出每一个平面上的投影面积来描述分子的形状.并进一步对分子投影进行了研究.用每一个平面的投影边缘代替面积预测化合物的活性.得到了更好的结果.[3]传统的拓朴指数很难区分属于3-D范畴的手性异构体.研究中扩展了由该实验室提出的Am指数,并利用该指数预测了手性药物的活性.[4]比较不同物种的β-球蛋白基因的第一个外显子.该方法不是直接进行DNA序列的比较,而是将DNA编码序列转化为图,然后模拟表征分子图的方法对之进一步处理.[5]利用VC++编写了一个包含三十多个分子拓扑指数的软件.

Circular crating optical scanning holography

The principle of optical scanning holography with circular gratings (CG) as the scanning field is presented. The generation and reconstruction processes of the scanning holography are described. These processes are numerical simulated by computer and the results are achieved. It is shown that the resolution power of the reconstructed image of CG scanning hologram is higher than that of FZP scanning hologram.

用分子轨道法探讨油田废水中取代苯系物的毒性效应

采用半经验的分子轨道AM1方法中的MOPAC软件包计算了55种在油田废水中易于检出的取代苯系物的分子轨道能(EHOMO,ELUMO,ENHOMO,ENLUMO)、分子生成热(△H0f)和偶极矩(μ)等量化参数,结合一阶价分子连接性指数(1XV)和正辛醇/水分配系数(logP)与实验所得发光菌的半数活性浓度(EC50)成功建立了多参数定量-结构活性关系模式.在分类建模的基础上,又获得了仅包含1XV和EHOMO两个参数的55种取代苯系物的定量结构-活性相关模式.探讨了不同取代基的毒性作用机制.结果表明,量化参数与物化参数结合能够很好地预测油田废水中具有不同取代基团的取代苯系物的生物活性,预测模式中量子化学参数的出现有利于深入探讨油田废水中有机污染物的毒性效应.

原子对空间距离法及其应用

采用原子对空间距离法表征化合物的三维结构信息.提出了计算端点的频数的方法,与段的频数相比,该方法能更好地描述原子对频数.以不同段的距离,分别采用上述两种频数计算得到化合物的相似度矩阵,然后把相似度衍生为新的变量.运用多元回归分析和人工神经网络分别构造了预测数学模型,并对所得到的预测结果进行了比较.这两种频数均较好地预测了HEPT类化合物的活性.

Am指数的扩展与手性化合物的构效关系研究

构效关系研究中的分子拓扑指数 ( Am)通常仅代表一个化合物的拓扑特征 ,所以预测手性化合物活性的能力较差 .我们对 Am指数进行了扩展 ,得到 e Am指数 ,并将其应用于手性分子的结构 -活性相关研究 .结果表明 ,由手性拓扑指数得到的 QSAR模型比传统的拓扑指数有更好的统计和预测手性化合物活性的能力

手性拓扑电荷指数和构效关系研究

对拓扑电荷指数进行了扩展,得到了含电负性的手性拓扑电荷指数。将其与Julián-Qrtiz 等人对该指数的扩展结果相比较,结果表明,新的拓扑指数能够得到更好的QSAR 模型。进一步运用人工神经网络法构造了数学模型,该模型能够更好地预测手性化合物的活性。

Study on QSPR of alcohols with a novel edge connectivity index F-m

A novel edge degree f(i) for heteroatom and multiple bonds in molecular graph is derived on the basis of the edge degree delta(e(r)). A novel edge connectivity index F-m is introduced. The multiple linear regression by using the edge connectivity index F-m and alcohol-type parameter delta, alcohol-distance parameter L can provide high-quality QSPR models for the normal boiling points (BPs), molar volumes (MVs), molar refraction (MRs), water solubility(log(1/S)) and octanol/water partition (logP) of alcohols with up to 17 non-hydrogen atoms. The results imply that these physical properties may be expressed as a liner combination of the edge connectivity index and alcohol-type parameter, 6, alcohol-distance parameter, L. For the models of the five properties, the correlation coefficient r and the standard errors are 0.9969,3.022; 0.9993, 1.504; 0.9992, 0.446; 0.9924,0.129 and 0.9973,0.123 for BPs, MVs, MRs, log(1/S) and logP, respectively. The cross-validation by using the leave-one-out method demonstrates the models to be highly reliable from the point of view of statistics.

Three-dimensional structural features and the toxicity of aminobenzenes and phenols

For a QSAR of the toxicity of aminobenzenes in environment and their structures, the projection areas of the molecules in 3D space were calculated. The combinations of the projection areas and quantum chemical as well as topological parameters were performed for the methods of regression analysis and neural network, and much better results than that by using CoMFA were achieved.

三维分子特征的提取及结构-毒性相关性的研究

为定量预测环境中有害有机化合物苯胺类的毒性,运用位点编码法,计算了三维空间分子的投影面积,同时,在回归分析和人工神经网络计算中与量化参数及拓扑指数进行了组合,得到了比CoMFA还好的结果。

Triplex selective 2-(2-naphthyl)quinoline compounds: Origins of affinity and new design principles

A novel competition dialysis assay was used to investigate the structural selectivity of a series of substituted 2-(2-naphthyl)quinoline compounds designed to target triplex DNA. The interaction of 14 compounds with 13 different nucleic acid sequences and structures was studied. A striking selectivity for the triplex structure poly dA:[poly dT](2) was found for the majority of compounds studied. Quantitative analysis of the competition dialysis binding data using newly developed metrics revealed that these compounds are among the most selective triplex-binding agents synthesized to date. A quantitative structure-affinity relationship (QSAR) was derived using triplex binding data for all 14 compounds used in these studies. The QSAR revealed that the primary favorable determinant of triplex binding free energy is the solvent accessible surface area. Triplex binding affinity is negatively correlated with compound electron affinity and the number of hydrogen bond donors. The QSAR provides guidelines for the design of improved triplex-binding agents.

Effective descriptions of molecular structures and the quantitative structure - Activity relationship studies

In this research. we found CoMFA alone could not obtain sufficiently a strong equation to allow confident prediction for aminobenzenes. When some other parameter. such as heat of molecular formation of the compounds, was introduced into the CoMFA model, the results Were improved greatly. It gives us a hint that a better description for molecular structures will yield a better prediction model, and this hint challenged us to look for another method-the projection areas of molecules in 3D space for 3D-QSAR. It is surprising that much better results than that obtained by using CoMFA Were achieved. Besides the CoMFA analysis. multiregression analysis and neural network methods for building the models were used in this paper.

1-[(2-羟乙氧基)甲基]-苯硫基胸腺嘧啶类化合物抗爱滋病活性的三维构效关系研究

HEPT类化合物(1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)-thymine derivatives)是一类抗爱滋病的新药,本文用CoMFA(Comaparative Molecular Field Analsis)方法对34个HEPT类化合物的三维关系进行了研究,获得了较好的相关模型。

广义二面角在定量结构/活性相关分析中的应用

化合物的结构与其活性具有相关性 .建立相关性需要由结构提取特征 ,并运用这些特征作为自变量去构造数学模型 ,以便预测未知的化合物及其活性 .目前 ,在诸多 3D- QSAR方法中 ,应用最为广泛的是 Co MFA( Comparasive Molecular Field Analysis)方法 [1～ 3] ,但新近的研究发现 ,Co MFA方法对于某类化合物 (如苯胺类化合物 )适应性较差 ,但分子在三维空间投影面积及量化参数的引入可大大改善所得结果[4 ] .本文从另一角度 (即广义二面角 )研究了分子在三维空间的形状 ,得到了满意的结果 .1　实验部分本文选用 34个 1 - [( 2 - Hydroxyethoxy) methyl]- 6- ( phenylthio) thymine( HEPT)类化合物 [5] ,通式见Scheme 1　 HEPT derivative substituted HEPTScheme 1 .表 1中分别列出了 34个分子对应的 R,X,Y基团 .该类化合物是具有较高生物活性的抗艾滋病药物 ,其活性以 EC50 表示 ( EC50 为降低 5 0 %T4细胞而被 HIV...

Three-dimensional quantitative structure-activity relationship of the opioid antagonist with potent anorectant activity of 3,4-dimethyl-4-(3-hydroxyphenyl) piperidine

A series of 3,4-dimethyl-4-(3-hydroxyphenyl) piperidine opioid antagonists with varying substituents on the nitrogen were evaluated for their effect on food consumption in obese Zucker rats. In developing three-dimensional quantitative structure-activity relationship (3D-QSAR) studies for this series of opioid antagonists, different structure alignments have been tested to predict the anorectant activities. The interaction energies between molecules and the probe atom were then correlated with anorectant activity using partial least squares (PLS) method. The steric and electrostatic features of the 3D-QSAR were presented in the form of standard deviation coefficient contour maps of steric and electrostatic fields. The results showed that 3D-QSAR results are much better than the results obtained by 2D-QSAR.