Natural selection on EPAS1 (HIF2 alpha) associated with low hemoglobin concentration in Tibetan highlanders

By impairing both function and survival, the severe reduction in oxygen availability associated with high-altitude environments is likely to act as an agent of natural selection. We used genomic and candidate gene approaches to search for evidence of such genetic selection. First, a genome-wide allelic differentiation scan (GWADS) comparing indigenous highlanders of the Tibetan Plateau (3,200 3,500 m) with closely related lowland Han revealed a genome-wide significant divergence across eight SNPs located near EPAS1. This gene encodes the transcription factor HIF2 alpha, which stimulates production of red blood cells and thus increases the concentration of hemoglobin in blood. Second, in a separate cohort of Tibetans residing at 4,200 m, we identified 31 EPAS1 SNPs in high linkage disequilibrium that correlated significantly with hemoglobin concentration. The sex-adjusted hemoglobin concentration was, on average, 0.8 g/dL lower in the major allele homozygotes compared with the heterozygotes. These findings were replicated in a third cohort of Tibetans residing at 4,300 m. The alleles associating with lower hemoglobin concentrations were correlated with the signal from the GWADS study and were observed at greatly elevated frequencies in the Tibetan cohorts compared with the Han. High hemoglobin concentrations are a cardinal feature of chronic mountain sickness offering one plausible mechanism for selection. Alternatively, as EPAS1 is pleiotropic in its effects, selection may have operated on some other aspect of the phenotype. Whichever of these explanations is correct, the evidence for genetic selection at the EPAS1 locus from the GWADS study is supported by the replicated studies associating function with the allelic variants.

Effects of unconditioned and conditioned aversive stimuli in an intense fear conditioning paradigm on synaptic plasticity in the hippocampal CA1 area in vivo

Repeated vivid recalls or flashbacks of traumatic memories and memory deficits are the cardinal features of post-traumatic stress disorder (PTSD). The underlying mechanisms are not fully understood yet. Here, we examined the effects of very strong fear conditioning (20 pairings of a light with a 1.5-mA, 0.5-s foot shock) and subsequent reexposure to the conditioning context (chamber A), a similar context (chamber B), and/or to the fear conditioned stimulus (CS) (a light) on synaptic plasticity in the hippocampal CA1 area in anesthetized Sprague-Dawley rats. The conditioning procedure resulted in very strong conditioned fear, as reflected by high levels of persistent freezing, to both the contexts and to the CS, 24 h after fear conditioning. The induction of long-term potentiation ON was blocked immediately after fear conditioning. It was still markedly impaired 24 h after fear conditioning; reexposure to the conditioning chamber A (CA) or to a similar chamber 13 (CB) did not affect the impairment. However, presentation of the CS in the CA exacerbated the impairment of LTP, whereas the CS presentation in a CB ameliorated the impairment so that LTP induction did not differ from that of control groups. The induction of long-term depression (LTD) was facilitated immediately, but not 24 h, after fear conditioning. Only reexposure to the CS in the CA, but not reexposure to either chamber A or B alone, or the CS in chamber B, 24 h after conditioning, reinstated the facilitation of LTD induction. These data demonstrate that unconditioned and conditioned aversive stimuli in an intense fear conditioning paradigm can have profound effects on hippocampal synaptic plasticity, which may aid to understand the mechanisms underlying impairments of hippocampus-dependent memory by stress or in PTSD. (c) 2005 Wiley-Liss, Inc.

Grating optimization and experiment on high-power distributed feedback lasers

Coupling coefficient is an important parameter for distributed feedback lasers. Modified coupled-wave equations are used to calculate the effect of grating shape on coupling coefficient of the second-order gratings. Corresponding devices demonstrate that the maximum kink-free power per facet reaches 50 mW and the sidemode suppression ratio is 36 dB.

High responsivity ultraviolet photodetector based on crack-free GaN on Si (111)

A Schottky-based metal-semiconductor-metal photodetector is fabricated on 1 mu m-thick, crack-free GaN on Si (I 11) substrate using an optimized AlxGal-xN/AlN complex buffer layer. It exhibits a high responsivity of 4600A/W at 366nm which may be due to both a crack-free sample and high internal gain. The relationship between responsivity and bias voltage is also investigated. The experiment results indicate that the responsivity increases with the bias voltage and shows a tendency to saturate. (c) 2007 WILEY-VCH Verlag GmbH &Co. KGaA, Weinheim.

甘肃临夏盆地晚中新世鬣狗类群头骨的几何形态测量学及生态形态学分析

本文采用几何形态测量的方法对产自和政地区的鬣狗科Hyaenictitherium, Ictitherium, Adcrocuta和旁鬣狗科Dinocrocuta的材料进行研究，分析了这4个属保存完好的头骨标本的侧面形态。与东非大草原现生食肉动物的头骨整体形态分布的比较和分析表明，和政的鼬鬣狗(Ictitherium)和鬣型鼬鬣狗(Hyaenictitherium)的头骨形状分布介于现生斑鬣狗(Crocuta crocuta)、犬科猎狗(Lycaon pictus)和金豺(Canis aureus)之间，为二者似豺生态形态的解释提供了几何形态测量证据。再者，上述两属化石鬣狗的形状分布与现生斑鬣狗的幼年个体形状重叠，表明现生斑鬣狗头骨的发育机制可能是在鼬鬣狗祖先类型的异速生长规律基础上的持续发育，进而演化出现有的粗壮形态。此外，巨鬣狗(Dinocrocuta)和副鬣狗(Adcrocuta)的头骨形状与现生的斑鬣狗在几何形态测量空间内有普遍重叠的现象，指示了这些异时出现的种类具有相似的生态形态，因而可能占据相近的生态位。结果还显示巨鬣狗和斑鬣狗的幼年个体形状相近，以及两者从幼年到成年发育的形状变化过程也具有相似的规律。因而，巨鬣狗和斑鬣狗之间的趋同演化不仅表现在成年头骨的粗壮程度上，而且在幼年发育模式中也存在平行演化现象。现生发育学与行为生态学已经证实，相对其他大型食肉动物，现生斑鬣狗发育粗壮头骨形态的机制不是以增速生长，而是以延长发育期来实现的。由此推断，巨鬣狗的发育期有可能和现生鬣狗相当(35个月)，也可能由于具有相对粗壮和巨大的头骨形态，其发育期会延长些。当然，这个新解释仍需要更多的化石数据和发育研究来证实。

大功率分布反馈激光器中光栅优化及试验

对于分布反馈激光器来说，光栅的耦合系数是一个重要参数. 利用改进的耦合波理论计算了具体器件结构中光栅形貌对二级光栅耦合系数的影响. 在此基础上制作的器件功率达到了单面50 mW，边模抑制比为36 dB.

东北地区千里光属、华千里光属及狗舌草属分类学研究

本文在前人工作的基础上，对东北产千里光属Senecio植物进行了形态分类、花解剖及花粉形成结构的研究。结果表明：1. 华千里光组Sect. Sinosenecio和狗舌草组sect. Tephroseris在形态和花结构上与千里光属Senecio植物有显著差异，应从千里光属中独立出来，自立为属，即：华千里光属Sinosenecio对狗舌草属Tephroseriso 2. 东北产华千里光属只有一种，即朝鲜千里光Sinosenecio Koreanus (Kom.) B. Nord。3. 东北产狗舌草属分为2组，共5种1变型，其中T. Campestris (Retz.) Reichb.f.spathulatus (Miq.) R. yin et C. y. Li为新组合，并订正了狗舌草T. campestris (Retz.) Reichb的拉丁名。4. 东北产千里光属分为2组，共5种，2变种1变型。5. 狗舌草属和千里光属花粉形态基本相似，都为球形，表面具刺，3孔沟型。花粉形成不能作为划分属的依据。本文还详细描述了每个种的形态学特征，地理分布和文献考证，并附有每个种的叶形。花解剖图及花粉的扫描电镜、光镜照片。还有分属及分种检索表。

Substitution Matrices of Residue Triplets Derived from Protein Blocks.

In protein sequence alignment, residue similarity is usually evaluated by substitution matrix, which scores all possible exchanges of one amino acid with another. Several matrices are widely used in sequence alignment, including PAM matrices derived from homologous sequence and BLOSUM matrices derived from aligned segments of BLOCKS. However, most matrices have not addressed the high-order residue-residue interactions that are vital to the bioproperties of protein.With consideration for the inherent correlation in residue triplet, we present a new scoring scheme for sequence alignment. Protein sequence is treated as overlapping and successive 3-residue segments. Two edge residues of a triplet are clustered into hydrophobic or polar categories, respectively. Protein sequence is then rewritten into triplet sequence with 2 · 20 · 2 = 80 alphabets. Using a traditional approach, we construct a new scoring scheme named TLESUMhp (TripLEt SUbstitution Matrices with hydropobic and polar information) for pairwise substitution of triplets, which characterizes the similarity of residue triplets. The applications of this matrix led to marked improvements in multiple sequence alignment and in searching structurally alike residue segments. The reason for the occurrence of the ‘‘twilight zone,’’ i.e., structure explosion of lowidentity sequences, is also discussed.