The role of MC1R gene in buffalo coat color

Melanocortin-1 receptor (MC1R) plays a major role in pigmentation in many species. To investigate if the MC1R gene is associated with coat color in water buffalo, the coding region of MC1R gene of 216 buffalo samples was sequenced, which included 49 black river buffalo (Murrah and Nili-Ravi), 136 swamp buffalo (Dehong, Diandongnan, Dechang, Guizhou, and Xilin) with white and gray body, and 31 hybrid offspring of river buffalo Nili-Ravi (or Murrah) and swamp buffalo. Among the three variation sites found, SNP684 was synonymous, while SNP310 and SNP384 were nonsynonymous, leading to p.S104G and p.I128M changes, respectively. Only Individuals carrying homozygote E-BR/E-BR were black. The genotype and phenotype analysis of the hybrid offspring of black river buffalo and gray swamp buffalo further revealed that the river buffalo type allele E-BR or the allele carrying the amino acid p.104S was important for the full function of MC1R. The in silico functional analysis showed that the amino acid substitutions p.G104S and p.M128I had significant impact on the function of MC1R. Above results indicate that the allele E-BR or the allele carrying the amino acid p.104S was associated with the black coat color in buffalo.

Sequence Characterization of the MC1R Gene in Yak (Poephagus grunniens) Breeds with Different Coat Colors

Melanocortin 1 receptor (MC1R) gene plays a key role in determining coat color in several species, including the cattle. However, up to now there is no report regarding the MC1R gene and the potential association of its mutations with coat colors in yak (

Gene mapping of a new coat mutation in mouse

Gene mapping of a mouse coat mutation has been investigated. First, 100 10-bp random primers were used to amplify DNA, but the mutation could not be located by this method because there were no correlation between the amplified products and coat phenotypes. Second, by using Idh1, Car2, Mup1, Pgb1, Hbb, Es10, Es1, Mod1, Gdc1, Ce2, Es3 as genetic markers, linkage test crosses (two-point test) consisting of intercrossing uncovered BALB/c mice (homozygotes) to CBA/N and C57BL/6 mice with normal hair and backcrossing the heterozygotes of the F1 to the uncovered BALB/c mice were made. It was soon evident that the mutation was linked to Es3 on chromosome 11. Furthermore, three-point test was made by using Es3 and D11Mit8 (a microsatellite DNA) as genetic markers. The result showed that the mutation was linked to Es3 with the percentage recombination of (7.89 +/- 2.19)%, and linked to D11Mit8 with the percentage recombination of (26.38 +/- 3.57)%. The percentage recombination between Es3 and D11Mit8 was (32.90 +/- 3.81)%. The mutation was named Uncovered, with the symbol Uncv. According to the recombinations, the loci order was D11Mit8-26.30 +/- 3.57- Uncv-7.89 +/- 2.19-Es3. From the location on the chromosome, it was concluded that the mutation was a new mutation which affected the skin and hair structure of mouse. The Uncv has entered MGD (Mouse Genome Database).

Tectonic geomorphology of the Ryukyu Trench-Arc-Backarc System: geological-geophysical exploration and mapping

OKINAWA TROUGH; BASIN

Non-Linear Wave-Induced Transient Response of Soil Around a Trenched Pipeline

Submarine pipelines are always trenched within a seabed for reducing wave loads and thereby enhancing their stability. Based on Biot’s poroelastic theory, a two-dimensional finite element model is developed to investigate non-linear wave-induced responses of soil around a trenched pipeline, which is verified with the flume test results by Sudhan et al. [Sudhan, C.M., Sundar, V., Rao, S.N., 2002. Wave induced forces around buried pipeline. Ocean Engineering, 29, 533–544] and Turcotte et al. [Turcotte, B.R., Liu, P.L.F., Kulhawy, F.H., 1984. Laboratory evaluation of wave tank parameters for wave-sediment interaction. Joseph H. Defree Hydraulic Laboratory Report 84-1, School of Civil and Environmental Engineering, Cornell University]. Non-linear wave-induced transient pore pressure around pipeline at various phases of wave loading is examined firstly. Unlike most previous investigations, in which only a single sediment layer and linear wave loading were concerned, in this study, the influences of the non-linearity of wave loading, the physical properties of backfill materials and the geometry profile of trenches on the excess pore pressures within the soil around pipeline, respectively, were explored, taking into account the in situ conditions of buried pipeline in the shallow ocean zones. Based on the parametric study, it is concluded that the shear modulus and permeability of backfill soils significantly affect the wave-induced excess pore pressures around trenched pipeline, and that the effect of wave non-linearity becomes more pronounced and comparable with that of trench depth, especially at high wave steepness in shallow water.

Preliminary Investigations on Low-Pressure Laminar Plasma Spray Processing

The usual plasma spraying methods often involve entrainment of the surrounding air into the turbulent plasma core and result in coated materials having relatively high porosity and low adhesive strength. Therefore, exploration of new plasma spraying methods for fabricating high quality coatings to meet the requirement of special applications will be quite important. In this study, an alternative plasma spraying method, i.e. the low-pressure laminar plasma spraying process, is investigated and used in an attempt for spraying thermal barrier coatings (TBCs). Investigations on the characteristics of the laminar plasma jets, feeding methods for the ceramic powder and the formation process of the individual quenched splats have been carried out. The properties of the TBCs sprayed by laminar plasma jet process, such as the adhesive strength at the interface of the ceramic coating/bond coat, the surface roughness and microstructure, are examined by tensile tests and scanning electron microscope (SEM) observations.

Small scale, grain size and substrate effects in nano-indentation experiment of film-substrate systems

The mechanical properties of film-substrate systems have been investigated through nano-indentation experiments in our former paper (Chen, S.H., Liu, L., Wang, T.C., 2005. Investigation of the mechanical properties of thin films by nano-indentation, considering the effects of thickness and different coating-substrate combinations. Surf. Coat. Technol., 191, 25-32), in which Al-Glass with three different film thicknesses are adopted and it is found that the relation between the hardness H and normalized indentation depth h/t, where t denotes the film thickness, exhibits three different regimes: (i) the hardness decreases obviously with increasing indentation depth; (ii) then, the hardness keeps an almost constant value in the range of 0.1-0.7 of the normalized indentation depth h/t; (iii) after that, the hardness increases with increasing indentation depth. In this paper, the indentation image is further investigated and finite element method is used to analyze the nano-indentation phenomena with both classical plasticity and strain gradient plasticity theories. Not only the case with an ideal sharp indenter tip but also that with a round one is considered in both theories. Finally, we find that the classical plasticity theory can not predict the experimental results, even considering the indenter tip curvature. However, the strain gradient plasticity theory can describe the experimental data very well not only at a shallow indentation depth but also at a deep depth. Strain gradient and substrate effects are proved to coexist in film-substrate nano-indentation experiments. (c) 2006 Elsevier Ltd. All rights reserved.

Reflection of shock-wave in pur foam from rigid wall

Keller proposed that a building, a mechanical installation or a body wrapped bya layer of foam plastics may be an efficient means for protection from damage ofblast wave. However, the practical effect was beyond expectation. For example, agunner wearing the foam plastics-padded waistcoat was injured more seriously by theblast wave from a muzzle. Monti took the foam plastics as homogeneous two-phasemedium and analyzed it with the theory of dusty flow. The obtained results showthat the peak pressure behind the reflected shock wave from rigid wall with foamcoat exceeds obviously that without foam coat under the same condition. Gel'fand,Patz and Weaver made experimental observations by means of shock tubes and veri-

A unified law of motion of lithospheric plates and the driving mechanism

From observed data on lithospheric plates, a unified empirical law for plate motion,valid for continental as well as oceanic plates, is obtained in the following form: The speedof plate motion U depends linearly on a geometric parameter T_d, ratio of the sum of effectiveridge length and trench arc length to the sum of area of continental part of plate and total areaof cold sinking slab. Based on this unified law, a simple mechanical analysis shows that, themain driving forces for lithospheric plates come from push along the mid-ocean ridge andpull by the cold sinking slab, while the main drag forces consist of the viscous traction beneaththe continental part of plate and over both faces of the sinking slab. Moreover, the specific-push along ridge and pull by slab are found to be of equal magnitude.

Low loss waveguide in Nd3+-doped silicate glass fabricated by carbon ion implantation

Low loss index enhanced planar waveguides in Nd3+-doped silicate glass were fabricated by 3.0 MeV C+ ion implantation. The enhancement of the refractive index confined the light propagating in the waveguide. The prism-coupling method was used to measure dark modes in the waveguide. The effective refractive indices of the waveguide were obtained based on the dark modes. The moving fiber method was applied to measure the waveguide propagation loss. Loss measured in non-annealed samples is about 0.6 dB/cm. And the waveguide mode optical near-field output at 633 nm was presented. (c) 2005 Elsevier B.V. All rights reserved.

中国郁金香属(广义)的系统学研究

郁金香属（Tulipa L.）是世界著名的观赏植物，广泛分布于欧洲、亚洲的温带地区以及非洲的西北部，中亚地区是其分布和多样化中心。该属包括老鸦瓣组、长柱组、郁金香组、毛蕊组、扭药组、鸡冠组和无毛组共七个组，40至150种。老鸦瓣组是东亚特有类群。中国共有郁金香属植物16种，主要分布于西北（新疆）以及中东部地区，其中老鸦瓣组有4个种，占该组全部种类的4/5。长期以来，由于对老鸦瓣组的生物学特性及其地理分布缺乏了解，该类群的归属问题一直都是该属系统学研究中争论的焦点之一。因此，本文以分布于我国的郁金香属作为主要研究对象，通过对其形态学、胚囊发育的比较胚胎学以及分子系统学研究，对老鸦瓣组的系统位置以及上述特征在该属分类中的意义进行了探讨。主要结果如下 1)通过对该属18种植物（包括土耳其的3个种）28个形态性状数据的分支分析，表明广义郁金香属并不是一个单系类群。Tulipa sect. Amana与该属其他四个组（sect. Orithyia、sect. Eriostemones、sect. Leiostemones和sect. Tulipanum）在分支树上各成一支，它们与Lloydia属构成一个大支的三个分支。同时，sect. Amana具有与子房近等长的花柱以及2-3（-4）个苞片等与郁金香属不同的形态特征。因此，我们认为sect. Amana应从广义郁金香属中独立出来，恢复其老鸦瓣属Amana Honda作为属的分类地位。 2)发现了一个新种：Amana kuocangshanica D.Y. Tan et D. Y. Hong。该种与A. erythronioides 和A. anhuiensis近缘，区别在于鳞茎皮内侧光滑无毛，下部叶披针形，自基部向上2/3处最宽，果喙长0.64±0.08 cm。 3）对16种植物叶表皮形态观察的结果表明，老鸦瓣属4个种的叶上表皮细胞为矩形或矩圆形、下表皮为菱形或矩形，垂周壁为直线形或波形，上表皮无气孔或气孔密度较小，这些特征与狭义郁金香属的种差异显著。在狭义郁金香属中，叶表皮特征在种间差异明显，可以作为分种及种间亲缘关系探讨的依据，但在组间没有明显的差异。 4）对19种植物的花粉形态观察表明，Amana属的4种为近椭球形、舟形和肾形， 外壁纹饰网状，网脊浅皱波状，与狭义郁金香属的15种具明显不同。在狭义郁金香属中，花粉外壁纹饰虽然在种间存在一定程度的差异，但对组的划分意义不大。 5）从种皮形态及微形态特征看，在所观察的16种植物中，Amana属的种子小，呈半月形，较厚，种柄明显，胚不易见;种皮纹饰为皱波状或不规则，与狭义郁金香属存在显著的差异。狭义郁金香属的12种在种皮纹饰、网眼大小及形状、网脊宽窄等方面均存在明显的差异，但组间无明显差别，说明这些特征在种的划分上具有一定的分类学意义。 6）对16种植物的胚囊发育过程观察表明：共有6种胚囊发育类型，即Fritillaria type、Drusa type、Tulipa iliensis type、Tulipa tetraphylla type、 Adoxa type和Eriostemones type。其中Tulipa iliensis type为所发现的一种新的胚囊发育类型。Tulipa iliensis、T. heterophylla和T. heteropetala3个种具有两种胚囊类型。在郁金香属中，胚囊的发育类型具有一定的系统学意义。 7）通过对21种郁金香以及猪牙花属2种植物基于nrDNA ITS区和cpDNA trnL-F 区的序列分析，发现广义郁金香属并非一单系类群，老鸦瓣属为猪牙花属的姐妹群。在狭义郁金香属中，sect. Orithyia、sect. Tulipanum以及sect. Eriostemones得到了该分子系统学分析的支持，而sect. Leiostemones是否成立及其系统关系问题尚有待于进一步研究。

葛属(豆科)的分类学修订

本论文对葛属（Pueraria DC.）进行了形态学、解剖学及植物地理学研究，重点分析了小叶、托叶、花序及花的形态变异规律。首次发现葛属生长习性和种皮纹饰特征在组的划分上具有重要的分类学意义，支持前人运用托叶着生方式、花序类型及每节簇生花的数目等特征划分组的观点。首次在光学显微镜下对葛属植物14种1变种叶表皮性状做了较为全面、深入的观察，发现葛属叶表皮细胞的形状、垂周壁的式样以及气孔大小有一定分类学意义，为葛属的分类修订提供了新资料。首次应用电子扫描显微镜观察了葛属10种1变种和2个外类群广西土黄芪Nogra guangxiensis C. F. Wei和琼豆Teyleria koordersii (Backer ex Koord.-Schum.) Backer的种皮纹饰特征，发现葛属的种皮纹饰有网纹型、断棱型、复网纹型和锐棱型等4种类型，他们与托叶的着生方式具有一定的关联性。托叶背着的类群为网纹型，其中采自中国和越南不同居群的山野葛Pueraria montana (Lour.) Merr.种皮次级纹饰有差别，这显示山野葛分化比较活跃。托叶基着的三裂叶野葛P. phaseoloides (Roxb.) Benth.、大花三裂叶野葛P. phaseoloides (Roxb.) Benth. var. javanica (Benth.) Baker、苦葛P. peduncularis (Graham ex Benth.) Benth.以及云南野葛P. yunnanensis Franch.的种皮纹饰为断棱形，小花野葛P. stricta Kurz种皮纹饰为复网纹型，喜玛拉雅葛藤P. wallichii DC.种皮纹饰为锐棱型。依据种皮纹饰推断，喜玛拉雅葛藤最原始，黄毛葛藤P. calycina Franch.最进化，与形态学特征演化方向相吻合。广西土黄芪种皮纹饰为网纹型，琼豆种皮纹饰为复网纹型，表明它们与葛属亲缘关系较近。这与形态学和分子证据相吻合。本文首次运用广义线形模型（GLM）结合地理信息系统（GIS）对葛属现有地理分布、潜在分布及50年后潜在分布进行了分析。所预测的潜在分布范围与观察到的地理分布范围一致，说明对特化的气候忍耐性是限制葛属物种地理分布的主要因素。温度、降水和海拔高度对葛属地理分布限制作用比较大。未来潜在分布预测显示葛属有向南、北扩散的趋势。 作者在研究了四千余份腊叶标本及野外形态考察的基础上，结合叶表皮及种皮纹饰资料，确认葛属分为3组，共19种3变种。其中，对Sect. Breviramulae Maesen ex Z. F. Le & X. Y. Zhu进行了合格发表，运用形态学、解剖学及种皮纹饰资料恢复了云南野葛种的地位，并为其指定了后选模式，P. pulcherrima (Koord.-Schum.) Merr. ex Koord.-Schum.正确的学名为P. sericans Schum.，对4个名称进行了归并。本文还给出了组和种的检索表、葛属各个种的形态描述、地理分布图及模式标本照片。

Ultrastructure of the bloodstream forms of the fish trypanosome Trypanosoma pseudobagri dogiel et achmerov, 1959

The ultrastructure of the bloodstream forms of Trypanosoma pseudobagri from its natural host, yellow catfish (Pseudobagrus fulvidraco), a freshwater fish, is described in the present work. The pellicle, consisting of a unit membrane with a superimposed surface coat, the structure and attachment of the flagellum and the subpellicular microtubules show the usual structural and organizational features. Cell organelles and cytoplasmic inclusions such as kinetoplast, mitochondria, nucleus and vacuoles, which occur in trypanosomidae, are observed and described in detail. The ultrastructure of T. pseudobagri has been compared with that of bloodstream forms of other species and culture forms of fish trypanosomes, and similarities and divergences are discussed. The Golgi-complex and endoplasmic reticulum could not be observed and need further investigation.

Ordered InAs quantum dots with controllable periods grown on stripe-patterned GaAs substrates

GaAs (001) substrates are patterned by electron beam lithography and wet chemical etching to control the nucleation of InAs quantum dots (QDs). InAs dots are grown on the stripe-patterned substrates by solid source molecular beam epitaxy, A thick buffer layer is deposited on the strip pattern before the deposition of InAs. To enhance the surface diffusion length of the In atoms, InAs is deposited with low growth rate and low As pressure. The AFM images show that distinct one-dimensionally ordered InAs QDs with homogeneous size distribution are created, and the QDs preferentially nucleate along the trench. With the increasing amount of deposited InAs and the spacing of the trenches, a number of QDs are formed beside the trenches. The distribution of additional QDs is long-range ordered, always along the trenchs rather than across the spacing regions.