A collection of empirical relations for use in ecological modelling

This study summarizes previously published and updated empirical relations for the estimation of production/biomass ratios in benthic invertebrates; of natural mortality in benthic invertebrates and finfish; and of respiration from production and vice versa in animal populations. AMS-EXCEL spreadsheet containing these equations is available from the author via Email. They are also included in the Ecopath with Ecosim software.

Warning signs unheeded in South Pacific invertebrate trade

Nearshore marine resources play a significant role in the lives of South Pacific islanders and can be critical to the economies of nations in the region. However, few countries have adequate management controls in place to ensure harvests remain at sustainable levels, and so determining current levels of utilization is far from easy. A lack of information about the volume of both domestic and international trade in marine invertebrates in high demand is a growing concern. Further hindering management and conservation efforts is the little available background biological information to allow for population assessments, according to this new study on the global trade in South Pacific marine invertebrates.

A post-tsunami assessment of coastal living resources of Langkawi Archipelago, Peninsular Malaysia

Rapid and detailed post-tsunami surveys carried out in the Langkawi archipelago in January 2005 showed that the coral reefs dOld_ID not suffer any significant structural damage. Nevertheless, there were signs of recent sediment resuspension at the sites studied. The diversity and abundance of coral reef fishes and invertebrates were low. However, this was not attributed to the tsunami effect but rather to the present environmental conditions. The extent of damage at the villages of Kubang Badak and Kuala Teriang may indicate that intact coastal ecosystems such as mangroves have the potential to protect lives and property during natural disasters.

Food and feeding habits of Synodontis nigrita from the Osun River, SW Nigeria

An investigation was conducted into the food and feeding habits of Synodontis nigrita from the Osun River near Epe, Lagos, Nigeria. The food items in the stomach of the S. nigrita covered a wide spectrum, ranging from various types of plankton to invertebrates and plants. A seasonal variation was also noted in the stomach contents of S. nigrita over the period of investigation. The predominant food items found in the stomach were Polycystis spp., Closterium spp., Oedogonium spp., plant tissues, insect parts and detritus. This suggests that S. nigrita is an omnivore.

The coelacanth in FishBase

The recent discovery of a coelacanth (Latimeria) population in Indonesia has renewed interest in this living fossil. Until this discovery, the coelacanth was thought to occur only in the Comoro archipelago. Recent studies show that the species is highly vulnerable to extinction. This paper presents a summary of the information available on the coelacanth in FishBase. It also highlights the utility of FishBase, both as a repository of scientific information and as an analytical tool for research.

Low cost light traps for coral reef fishery research and sustainable ornamental fisheries

Two relatively inexpensive light traps to capture pre-settling reef fish and invertebrates are described. A trap made from a plastic bucket (with plastic bottles, a small plastic waste bin and two sheets of plywood) that costs US$15 appears to be just as effective as a large aluminium and plexiglass trap that costs US$275.

The Black Clam, Villorita cyprinoides, Fishery in the State of Kerala, India

The black clam, Villorita cyprinoides, is the most important clam species landed in India. The State of Kerala has been, by far, the leading producer of the species. Nearly all the landings, about 25,000 tons (t)/year are harvested in Vembanad Lake, the largest estuary, 96 km (54 mi) long, on the west coast of India. Nearly 4,000 fishermen harvest the black clams year-round. They harvest most by hand while diving in waters from 2.1–2.7 m (7–9 ft) deep. Each collects 150–200 kg (3–5 bushels)/day. Upon returning from the harvesting beds, the fishermen and their families cook the clams and separate their meats from their shells using simple sieves. Fishermen’s wives sell the meats within their local villages and save some for their families to eat. The shells are sold through organized fishermen societies to various industries. A substantial quantity of sub-fossil black clam shells lies buried from 22–50 cm (9–20 in) beneath the lake sediments. They are dredged in a controlled manner and sold to the same industries. The stocks of black clams seem to be declining slowly in the southern part of the lake because the water has been getting fresher, but they are not declining in the northern half. A likely threat to the landings may be a lack of fishermen in the future.

Skimmer Trawl Fishery Catch Evaluations in Coastal Louisiana, 2004 and 2005

Fishery observers collected data from 307 tows during 96 trips aboard skimmer trawl vessels in Louisiana’s coastal waters from September 2004 through June 2005 to estimate catch rates of target and nontarget species, including sea turtles (Cheloniidae and Dermochelyidae), by area and season during commercial shrimping operations. About 16,965.7 kg of total catch were recorded during 517.0 hours of fishing operations. Based on weight extrapolations from species composition samples, penaeid shrimp (Penaeidae) dominated the catch at 66%, followed by finfish at 19%, nonpenaeid shrimp crustaceans at 7%, discarded penaeid shrimp at 6%, and debris at 3%. Noncrustacean invertebrates comprised less than 1%. Catch rates in kilograms per hour by category was 21.6 for penaeid shrimp, 6.2 for finfish, 2.2 for nonpenaeid crustaceans, 1.8 for discarded penaeid shrimp, and 0.9 for debris. White shrimp, Litopenaeus setiferus, other penaeid shrimp, and Gulf menhaden, Brevoortia patronus, were the top three dominant species by weight. Seasonally, a higher catch rate was observed from May through August 2005 for penaeid shrimp as compared with the September through December 2004 period. Conversely, the September through December 2004 period experienced a higher catch rate for finfish than during May through August 2005. No sea turtle interactions were documented.

Cruises of the Albatross off San Diego and Other Parts of Southern California, 1889–1916

Between 1889 and 1916, the U. S. Fish Commission steamer Albatross made numerous trips to waters off southern California, particularly in and near San Diego Bay. The typical pattern for many years was to conduct cruises in waters off the Pacific Northwest or Alaska in summer months and waters off southern California in winter months. The Albatross conducted the first depth soundings and benthic profiles for southern California waters and secured the first samples of many endemic marine animals of this region. Albatross collections formed the basis for numerous definitive monographs of invertebrates and vertebrates that were published in subsequent years. The Albatross anchored in San Diego Bay in 1894, conducting the first biological investigations of the bay, and returned to sample again in many subsequent years. The ship and its crew also examined Cortez and Tanner banks for exploitation potential and conducted the first biological investigations of southern California’s tuna stocks in 1915 and 1916.

Kumataro Ito, Japanese Artist on Board the U.S. Bureau of Fisheries Steamer Albatross During the Philippine Expedition, 1907–1910

Kumataro Ito produced hundreds of beautiful color paintings of fishes and invertebrates during and after the 1907-10 Philippine Expeditin of the U.S. Bureau of Fisheries Steamer Albatross. The paintings are housed in the files of the Divisions of Fishes and Mollusks, United States National Museum of Natural History, and Smithsonian Institution Archives, Washington, D.C. Few of those paintings have been published in color, but many have been publishes in black and white. Two years after the expedition, Ito came to Washington, D.C., in 1912 for an extended period to render final paintings based on preliminary color sketches made during the expedition. He did not completly render all the sketches during his stay, probably because he was asked to produced a large number of black-and-white illustrations of Philippine fishes, and a few of North American fishes. Most of the black-and-white illustrations have been published. Few publications containing Ito's Philippine and North American illustrations have acknowledged him. The very little that is known about Ito's life is discussed, examples of his black-and-white and colored fish paintings are reproduced, and his previously unacknowledged illustrations in various publications are herein acknowledged. Another Japanese artist, Yasui, about whom almost nothing is known, joined the Albatross during Ito's second tour on board the ship. It appears, with few exceptions, that Yasui produced only preliminary color sketches of fishes, which, if rendered as final paintings, were done by Ito.

A Century of Copepods: The U.S. Fisheries Steamer Albatross

The marine invertebrates of North America received little attention before the arrival of Louis Agassiz in 1846. Agassiz and his students, particularly Addison E. Verrill and Richard Rathbun, and Agassiz's colleague Spencer F. Baird, provided the concept and stimulus for expanded investigations. Baird's U.S. Commission of Fish and Fisheries (1871) provided a principal means, especially through the U.S. Fisheries Steamer Albatross (1882). Rathbun participated in the first and third Albatrossscientific cruises in 1883-84 and published the fist accounts of Albatross parasitic copepods. The first report of Albatross planktonic copepods was published in 1895 by Wilhelm Giesbrecht of the Naples Zoological Station. Other collections were sent to the Norwegian Georg Ossian Sars. The American Charles Branch Wilson eventually added planktonic copepods to his extensive published works on the parasitic copepods from the Albatross. The Albatross copepods from San Francisco Bay were reported upon by Calvin Olin Esterly in 1924. Henry Bryant Bigelow accompanied the last scientific cruise of the Albatross in 1920. Bigelow incorporated the 1920 copepods into his definitive study of the plankton of the Gulf of Maine. The late Otohiko Tanaka, in 1969, published two reviews of Albatross copepods. Albatross copepods will long be worked and reworked. This great ship and her shipmates were mutually inspiring, and they inspire us still.

Effects of Gear Modifications on the Trawl Performance and Catching Efficiency of the West Coast Upper Continental Slope Groundfish Survey Trawl

Since 1984, annual bottom trawl surveys of the west coast (California–Washington) upper continental slope (WCUCS) have provided information on the abundance, distribution, and biological characteristics of groundfish resources. Slope species of the deep-water complex (DWC) are of particular importance and include Dover sole, Microstomus pacificus; sablefish, Anoplopoma fimbria; shortspine thornyhead, Sebastolobus alascanus; and longspine thornyhead, S. altivelis. In the fall of 1994, we conducted an experimental gear research cruise in lieu of our normal survey because of concerns about the performance of the survey trawl. The experiment was conducted on a soft mud bottom at depths of 460–490 m off the central Oregon coast. Treatments included different combinations of door-bridle rigging, groundgear weight, and scope length. The experimental design was a 2 ´ 2 ´ 2 factorial within a randomized complete-block. Analysis of variance was used to examine the effects of gear modifications on the engineering performance of the trawl (i.e. trawl dimensions, variation in trawl dimensions, and door attitude) and to determine if catch rates in terms of weight and number of DWC species and invertebrates were affected by the gear modifications. Trawl performance was highly variable for the historically used standard trawl configuration. Improvements were observed with the addition of either a 2-bridle door or lighter ground gear. Changes in scope length had relatively little effect on trawl performance. The interaction of door bridle and ground gear weight had the most effect on trawl performance. In spite of the standard trawl’s erratic performance, catch rates of all four DWC species and invertebrates were not significantly different than the 2-bridle/heavy combination, which did the best in terms of engineering performance. The most important factor affecting DWC catch rates was ground gear. Scope length and the type of door bridle had little effect on DWC catch rates. Subsequent revisions to survey gear and towing protocol and their impact on the continuity of the slope survey time series are discussed.

Charles Henry Gilbert (1859-1928), Naturalist-in-Charge: the 1906 North Pacific Expedition of the Steamer Albatross

Fishery science pioneers often faced challenges in their field work that are mostly unknown to modern biologists. Some of the travails faced by ichthyologist and, later, fishery biologist Charles Henry Gilbert (1859-1928) during his service as Naturalist-in-Charge of the North Pacific cruise ofthe U.S. Bureau of Fisheries Steamer Albatross in 1906, are described here, as are accomplishments of the cruise. The vessel left San Francisco, Calif., on 3 May 1906, just after the great San Francisco earthquake, for scientific exploration of waters of the Aleutian islands, Bering Sea, Kamchatka, Sakhalin, and Japan, returning to San Francisco in December. Because the expedition occurred just after the war between Japan and Russia of 1904-05 floating derelict mines in Japanese waters were often a menace. Major storms caused havoc in the region, and the captain of the Albatross, Lieutenant Commander LeRoy Mason Garrett (1857-1906), U.S.N., was lost at sea, apparently thrown from the vessel during a sudden storm on the return leg of the cruise. Despite such obstacles, Gilbert and the Albatross successfully completed their assigned chores. They occupied 339 dredging and 48 hydrographic stations, and discovered over 180 new species of fishes and many new species of invertebrates. The expedition's extensive biological collections spawned over 30 descriptive publications, some of which remain today as standards of knowledge.

A History of Benthic Research in the NMFS Northeast Fisheries Science Center

The Northeast Fisheries Science Center of NOAA's National Marine Fisheries Service has a long history of research on benthic invertebrates and habitats in support of the management of living marine resources. These studies began in the 1870's under Spencer F. Baird's guidance as part of an effort to characterize the Nation's fisheries and living marine resources and their ecological interactions. This century and a quarter of research has included many benthic invertebrate studies, including community characterizations, shellfish biology and culture, pathology, ecosystem energy budget modeling, habitat evaluations, assessments of human impacts, toxic chemical bioaccumulation in demersal food webs, habitat or endangered species management, benthic autecology, systematics (to define new species and species population boundaries), and other benthic studies. Here we review the scope of past and current studies as a background for strategic research planning and suggest areas for further research to support NOAA's goals of sustainable fisheries management, healthy coastal ecosystems, and protected species populations.

An Ecological Perspective on Inshore Fisheries in the Main Hawaiian Islands

A description of fisheries within a depth of 100 fathoms is provided for the eight southeastern-most islands of the Hawaiian Archipelago, known as the main Hawaiian Islands (MHI). These are the inhabited islands of the State of Hawaii and are those most subject to inshore fishing pressure, because of their accessibility. Between 1980 and 1990, an average of 1,300 short tons of fishes and invertebrates were reported annually within 100 fm by commercial fishermen. Total landings may be significantly greater, since fishing is a popular pastime of residents and noncommercial landings are not reported. Although limited data are available on noncommercial fisheries, the majority of this review is based on reported commercial landings. The principal ecological factors influencing fisheries in the MHI include coastal currents, the breadth and steepness of the coastal platform, and differences in windward and leeward climate. Expansive coastal development, increased erosion, and sedimentation are among negative human impacts on inshore reef ecosystems on most islands. Commercial fisheries for large pelagics (tunas and billfishes) are important in inshore areas around Ni'ihau, Ka'ula Rock, Kauai, and the Island of Hawaii (the Big Island), as are bottom "handline" fisheries for snappers and groupers around Kauai and Molokai. However, many more inshore fishermen target reef and estuarine species. Two pelagic carangids, "akule," Selar crumenopthalmus, and "opelu," Decapterus macarellus, support the largest inshore fisheries in the MHI. During 1980-90, reported commercial landings within three miles of shore averaged 203 and 125 t for akule and opelu, respectively. Akule landings are distributed fairly evenly throughout the MHI, while more than 72% of the state's inshore opelu landings take place on the Big Island. Besides akule and opelu, other important commercial fisheries on all the MHI include those for surgeon, soldier, parrot, and goatfishes; snappers; octopus, and various trevallies. Trends in reported landings, trips, and catch per unit effort over the last decade are outlined for these fisheries. In heavily populated areas, fishing pressure appears to exceed the capacity of inshore resources to renew themselves. Management measures are beginning to focus on methods of limiting inshore fishing effort, while trying to maintain residents' access to fishing.