On the thermal budget of Pahoehoe lava flows

In this thesis I investigate some aspects of the thermal budget of pahoehoe lava flows. This is done with a combination of general field observations, quantitative modeling, and specific field experiments. The results of this work apply to pahoehoe flows in general, even though the vast bulk of the work has been conducted on the lavas formed by the Pu'u 'O'o - Kupaianaha eruption of Kilauea Volcano on Hawai'i. The field observations rely heavily on discussions with the staff of the United States Geological Survey's Hawaiian Volcano Observatory (HVO), under whom I labored repeatedly in 1991-1993 for a period totaling about 10 months.

The quantitative models I have constructed are based on the physical processes observed by others and myself to be active on pahoehoe lava flows. By building up these models from the basic physical principles involved, this work avoids many of the pitfalls of earlier attempts to fit field observations with "intuitively appropriate" mathematical expressions. Unlike many earlier works, my model results can be analyzed in terms of the interactions between the different physical processes. I constructed models to: (1) describe the initial cooling of small pahoehoe flow lobes and (2) understand the thermal budget of lava tubes.

The field experiments were designed either to validate model results or to constrain key input parameters. In support of the cooling model for pahoehoe flow lobes, attempts were made to measure: (1) the cooling within the flow lobes, (2) the amount of heat transported away from the lava by wind, and (3) the growth of the crust on the lobes. Field data collected by Jones [1992], Hon et al. [1994b], and Denlinger [Keszthelyi and Denlinger, in prep.] were also particularly useful in constraining my cooling model for flow lobes. Most of the field observations I have used to constrain the thermal budget of lava tubes were collected by HVO (geological and geophysical monitoring) and the Jet Propulsion Laboratory (airborne infrared imagery [Realmuto et al., 1992]). I was able to assist HVO for part of their lava tube monitoring program and also to collect helicopterborne and ground-based IR video in collaboration with JPL [Keszthelyi et al., 1993].

The most significant results of this work are (1) the quantitative demonstration that the emplacement of pahoehoe and 'a'a flows are the fundamentally different, (2) confirmation that even the longest lava flows observed in our Solar System could have formed as low effusion rate, tube-fed pahoehoe flows, and (3) the recognition that the atmosphere plays a very important role throughout the cooling of history of pahoehoe lava flows. In addition to answering specific questions about the thermal budget of tube-fed pahoehoe lava flows, this thesis has led to some additional, more general, insights into the emplacement of these lava flows. This general understanding of the tube-fed pahoehoe lava flow as a system has suggested foci for future research in this part of physical volcanology.

Single cell proteomics microchip to profile immune function, with applications in stem cell biology, translational disease mechanism study and clinical therapeutics monitoring

In response to infection or tissue dysfunction, immune cells develop into highly heterogeneous repertoires with diverse functions. Capturing the full spectrum of these functions requires analysis of large numbers of effector molecules from single cells. However, currently only 3-5 functional proteins can be measured from single cells. We developed a single cell functional proteomics approach that integrates a microchip platform with multiplex cell purification. This approach can quantitate 20 proteins from >5,000 phenotypically pure single cells simultaneously. With a 1-million fold miniaturization, the system can detect down to ~100 molecules and requires only ~104 cells. Single cell functional proteomic analysis finds broad applications in basic, translational and clinical studies. In the three studies conducted, it yielded critical insights for understanding clinical cancer immunotherapy, inflammatory bowel disease (IBD) mechanism and hematopoietic stem cell (HSC) biology.

To study phenotypically defined cell populations, single cell barcode microchips were coupled with upstream multiplex cell purification based on up to 11 parameters. Statistical algorithms were developed to process and model the high dimensional readouts. This analysis evaluates rare cells and is versatile for various cells and proteins. (1) We conducted an immune monitoring study of a phase 2 cancer cellular immunotherapy clinical trial that used T-cell receptor (TCR) transgenic T cells as major therapeutics to treat metastatic melanoma. We evaluated the functional proteome of 4 antigen-specific, phenotypically defined T cell populations from peripheral blood of 3 patients across 8 time points. (2) Natural killer (NK) cells can play a protective role in chronic inflammation and their surface receptor – killer immunoglobulin-like receptor (KIR) – has been identified as a risk factor of IBD. We compared the functional behavior of NK cells that had differential KIR expressions. These NK cells were retrieved from the blood of 12 patients with different genetic backgrounds. (3) HSCs are the progenitors of immune cells and are thought to have no immediate functional capacity against pathogen. However, recent studies identified expression of Toll-like receptors (TLRs) on HSCs. We studied the functional capacity of HSCs upon TLR activation. The comparison of HSCs from wild-type mice against those from genetics knock-out mouse models elucidates the responding signaling pathway.

In all three cases, we observed profound functional heterogeneity within phenotypically defined cells. Polyfunctional cells that conduct multiple functions also produce those proteins in large amounts. They dominate the immune response. In the cancer immunotherapy, the strong cytotoxic and antitumor functions from transgenic TCR T cells contributed to a ~30% tumor reduction immediately after the therapy. However, this infused immune response disappeared within 2-3 weeks. Later on, some patients gained a second antitumor response, consisted of the emergence of endogenous antitumor cytotoxic T cells and their production of multiple antitumor functions. These patients showed more effective long-term tumor control. In the IBD mechanism study, we noticed that, compared with others, NK cells expressing KIR2DL3 receptor secreted a large array of effector proteins, such as TNF-α, CCLs and CXCLs. The functions from these cells regulated disease-contributing cells and protected host tissues. Their existence correlated with IBD disease susceptibility. In the HSC study, the HSCs exhibited functional capacity by producing TNF-α, IL-6 and GM-CSF. TLR stimulation activated the NF-κB signaling in HSCs. Single cell functional proteome contains rich information that is independent from the genome and transcriptome. In all three cases, functional proteomic evaluation uncovered critical biological insights that would not be resolved otherwise. The integrated single cell functional proteomic analysis constructed a detail kinetic picture of the immune response that took place during the clinical cancer immunotherapy. It revealed concrete functional evidence that connected genetics to IBD disease susceptibility. Further, it provided predictors that correlated with clinical responses and pathogenic outcomes.

Thin metastructures with engineered thermal expansion

The geometry and constituent materials of metastructures can be used to engineer the thermal expansion coefficient. In this thesis, we design, fabricate, and test thin thermally stable metastructures consisting of bi-metallic unit cells and show how the coefficient of thermal expansion (CTE) of these metastructures can be finely and coarsely tuned by varying the CTE of the constituent materials and the unit cell geometry. Planar and three-dimensional finite element method modeling is used to drive the design and inform experiments, and predict the response of these metastructures. We demonstrate computationally the significance of out-of-plane effects in the metastructure response. We develop an experimental setup using digital image correlation and an infrared camera to experimentally measure full displacement and temperature fields during testing and accurately measure the metastructures’ CTE. We experimentally demonstrate high aspect ratio metastructures of Ti/Al and Kovar/Al which exhibit near-zero and negative CTE, respectively. We demonstrate robust fabrication procedures for thermally stable samples with high aspect ratios in thin foil and thin film scales. We investigate the lattice structure and mechanical properties of thin films comprising a near-zero CTE metastructure. The mechanics developed in this work can be used to engineer metastructures of arbitrary CTE and can be extended to three dimensions.

Characterizing a resonator bolometer array

High-background applications such as climate monitoring, biology and security applications demand a large dynamic range. Under such conditions ultra-high sensitivity is not required. The resonator bolometer is a novel detector which is well-suited for these conditions. This device takes advantage of the high-density frequency multiplexing capabilities of superconducting microresonators while allowing for the use of high-Tc superconductors in fabrication, which enables a modest (1-4 K) operating temperature and larger dynamic range than is possible with conventional microresonators. The moderate operating temperature and intrinsic multiplexability of this device reduce cost and allow for large pixel counts, making the resonator bolometer especially suitable for the aforementioned applications. A single pixel consists of a superconducting microresonator whose light-absorbing area is placed on a thermally isolated island. Here we present experimental results and theoretical calculations for a prototype resonator bolometer array. Intrinsic device noise and noise equivalent power (NEP) under both dark and illuminated conditions are presented. Under dark conditions the device sensitivity is limited by the thermal noise fluctuations from the bolometer legs. Under the experimental illuminated conditions the device was photon noise limited.