Characterization of detectors and instrument systematics for the SPIDER CMB polarimeter

We know from the CMB and observations of large-scale structure that the universe is extremely flat, homogenous, and isotropic. The current favored mechanism for generating these characteristics is inflation, a theorized period of exponential expansion of the universe that occurred shortly after the Big Bang. Most theories of inflation generically predict a background of stochastic gravitational waves. These gravitational waves should leave their unique imprint on the polarization of the CMB via Thompson scattering. Scalar perturbations of the metric will cause a pattern of polarization with no curl (E-mode). Tensor perturbations (gravitational waves) will cause a unique pattern of polarization on the CMB that includes a curl component (B-mode). A measurement of the ratio of the tensor to scalar perturbations (r) tells us the energy scale of inflation. Recent measurements by the BICEP2 team detect the B-mode spectrum with a tensor-to-scalar ratio of r = 0.2 (+0.05, −0.07). An independent confirmation of this result is the next step towards understanding the inflationary universe.

This thesis describes my work on a balloon-borne polarimeter called SPIDER, which is designed to illuminate the physics of the early universe through measurements of the cosmic microwave background polarization. SPIDER consists of six single-frequency, on-axis refracting telescopes contained in a shared-vacuum liquid-helium cryostat. Its large format arrays of millimeter-wave detectors and tight control of systematics will give it unprecedented sensitivity. This thesis describes how the SPIDER detectors are characterized and calibrated for flight, as well as how the systematics requirements for the SPIDER system are simulated and measured.

Constraining the interpretation of 2-methylhopanoids through genetic and phylogenetic methods

Hopanoids are a class of sterol-like lipids produced by select bacteria. Their preservation in the rock record for billions of years as fossilized hopanes lends them geological significance. Much of the structural diversity present in this class of molecules, which likely underpins important biological functions, is lost during fossilization. Yet, one type of modification that persists during preservation is methylation at C-2. The resulting 2-methylhopanoids are prominent molecular fossils and have an intriguing pattern over time, exhibiting increases in abundance associated with Ocean Anoxic Events during the Phanerozoic. This thesis uses diverse methods to address what the presence of 2-methylhopanes tells us about the microbial life and environmental conditions of their ancient depositional settings. Through an environmental survey of hpnP, the gene encoding the C-2 hopanoid methylase, we found that many different taxa are capable of producing 2-methylhopanoids in more diverse modern environments than expected. This study also revealed that hpnP is significantly overrepresented in organisms that are plant symbionts, in environments associated with plants, and with metabolisms that support plant-microbe interactions; collectively, these correlations provide a clue about the biological importance of 2-methylhopanoids. Phylogenetic reconstruction of the evolutionary history of hpnP revealed that 2-methylhopanoid production arose in the Alphaproteobacteria, indicating that the origin of these molecules is younger than originally thought. Additionally, we took genetic approach to understand the role of 2-methylhopanoids in Cyanobacteria using the filamentous symbiotic Nostoc punctiforme. We found that hopanoids likely aid in rigidifying the cell membrane but do not appear to provide resistance to osmotic or outer membrane stressors, as has been shown in other organisms. The work presented in this thesis supports previous findings that 2-methylhopanoids are not biomarkers for oxygenic photosynthesis and provides new insights by defining their distribution in modern environments, identifying their evolutionary origin, and investigating their role in Cyanobacteria. These efforts in modern settings aid the formation of a robust interpretation of 2-methylhopanes in the rock record.