Regularized model learning in EDAs for continuous and multi-objective optimization

Probabilistic modeling is the de�ning characteristic of estimation of distribution algorithms (EDAs) which determines their behavior and performance in optimization. Regularization is a well-known statistical technique used for obtaining an improved model by reducing the generalization error of estimation, especially in high-dimensional problems. `1-regularization is a type of this technique with the appealing variable selection property which results in sparse model estimations. In this thesis, we study the use of regularization techniques for model learning in EDAs. Several methods for regularized model estimation in continuous domains based on a Gaussian distribution assumption are presented, and analyzed from di�erent aspects when used for optimization in a high-dimensional setting, where the population size of EDA has a logarithmic scale with respect to the number of variables. The optimization results obtained for a number of continuous problems with an increasing number of variables show that the proposed EDA based on regularized model estimation performs a more robust optimization, and is able to achieve signi�cantly better results for larger dimensions than other Gaussian-based EDAs. We also propose a method for learning a marginally factorized Gaussian Markov random �eld model using regularization techniques and a clustering algorithm. The experimental results show notable optimization performance on continuous additively decomposable problems when using this model estimation method. Our study also covers multi-objective optimization and we propose joint probabilistic modeling of variables and objectives in EDAs based on Bayesian networks, speci�cally models inspired from multi-dimensional Bayesian network classi�ers. It is shown that with this approach to modeling, two new types of relationships are encoded in the estimated models in addition to the variable relationships captured in other EDAs: objectivevariable and objective-objective relationships. An extensive experimental study shows the e�ectiveness of this approach for multi- and many-objective optimization. With the proposed joint variable-objective modeling, in addition to the Pareto set approximation, the algorithm is also able to obtain an estimation of the multi-objective problem structure. Finally, the study of multi-objective optimization based on joint probabilistic modeling is extended to noisy domains, where the noise in objective values is represented by intervals. A new version of the Pareto dominance relation for ordering the solutions in these problems, namely �-degree Pareto dominance, is introduced and its properties are analyzed. We show that the ranking methods based on this dominance relation can result in competitive performance of EDAs with respect to the quality of the approximated Pareto sets. This dominance relation is then used together with a method for joint probabilistic modeling based on `1-regularization for multi-objective feature subset selection in classi�cation, where six di�erent measures of accuracy are considered as objectives with interval values. The individual assessment of the proposed joint probabilistic modeling and solution ranking methods on datasets with small-medium dimensionality, when using two di�erent Bayesian classi�ers, shows that comparable or better Pareto sets of feature subsets are approximated in comparison to standard methods.

Diversidad funcional y diversidad filogenética en los bosques secos del sur del Ecuador

El concepto tradicional de reglas de ensamblaje refleja la idea de que las especies no co-ocurren al azar sino que están restringidos en su co-ocurrencia por la competencia interespecífica o por un filtrado ambiental. En está tesis abordé la importancia de los procesos que determinan el ensamble de la comunidad en la estructuración de los Bosques Secos en el Sur del Ecuador. Este estudio se realizó en la región biogeográfica Tumbesina, donde se encuentra la mayor concentración de bosques secos tropicales bien conservados del sur de Ecuador, y que constituyen una de las áreas de endemismo más importantes del mundo. El clima se caracteriza por una estación seca que va desde mayo a diciembre y una estación lluviosa de enero a abril, su temperatura anual varía entre 20°C y 26°C y una precipitación promedio anual entre 300 y 700 mm. Mi primer tema fue orientado a evaluar si la distribución de los rasgos funcionales a nivel comunitario es compatible con la existencia de un filtro ambiental (filtrado del hábitat) o con la existencia de un proceso de limitación de la semejanza funcional impuesta por la competencia inter-específica entre 58 especies de plantas leñosas repartidas en 109 parcelas (10x50m). Para ello, se analizó la distribución de los valores de cinco rasgos funcionales (altura máxima, densidad de la madera, área foliar específica, tamaño de la hoja y de masa de la semilla), resumida mediante varios estadísticos (rango, varianza, kurtosis y la desviación estándar de la distribución de distancias funcionales a la especies más próxima) y se comparó con la distribución esperada bajo un modelo nulo con ausencia de competencia. Los resultados obtenidos apoyan que tanto el filtrado ambiental como la limitación a la semejanza afectan el ensamble de las comunidades vegetales de los bosques secos Tumbesinos. Un segundo tema fue identificar si la diversidad funcional está condicionada por los gradientes ambientales, y en concreto si disminuye en los ambientes más estresantes a causa del filtrado ambiental, y si por el contrario aumenta en los ambientes más benignos donde la competencia se vuelve más importante, teniendo en cuenta las posibles modificaciones a este patrón general a causa de las interacciones de facilitación. Para abordar este estudio analizamos tanto las variaciones en la diversidad funcional (respecto a los de los cinco rasgos funcionales empleados en el primer capítulo de la tesis) como las variaciones de diversidad filogenética a lo largo de un gradiente de estrés climático en los bosques tumbesinos, y se contrastaron frente a las diversidades esperadas bajo un modelo de ensamblaje completamente aleatorio de la comunidad. Los análisis mostraron que tan sólo la diversidad de tamaños foliares siguió el patrón de variación esperado, disminuyendo a medida que aumentó el estrés abiótico mientras que ni el resto de rasgos funcionales ni la diversidad funcional multivariada ni la diversidad filogenética mostraron una variación significativa a lo largo del gradiente ambiental. Un tercer tema fue evaluar si los procesos que organizan la estructura funcional de la comunidad operan a diferentes escalas espaciales. Para ello cartografié todos los árboles y arbustos de más de 5 cm de diámetro en una parcela de 9 Ha de bosque seco y caractericé funcionalmente todas las especies. Dicha parcela fue dividida en subparcelas de diferente tamaño, obteniéndose subparcelas a seis escalas espaciales distintas. Los resultados muestran agregación de estrategias funcionales semejantes a escalas pequeñas, lo que sugiere la existencia bien de filtros ambientales actuando a escala fina o bien de procesos competitivos que igualan la estrategia óptima a dichas escalas. Finalmente con la misma información de la parcela permanente de 9 Ha. Nos propusimos evaluar el efecto y comportamiento de las especies respecto a la organización de la diversidad taxonómica, funcional y filogenética. Para ello utilicé tres funciones sumario espaciales: ISAR- para el nivel taxonómico, IFDAR para el nivel funcional y IPSVAR para el nivel filogenética y las contrastamos frente a modelos nulos que describen la distribución espacial de las especies individuales. Los resultados mostraron que en todas las escalas espaciales consideradas para ISAR, IFDAR y IPSVAR, la mayoría de las especies se comportaron como neutras, es decir, que están rodeados por la riqueza de diversidad semejante a la esperada. Sin embargo, algunas especies aparecieron como acumuladoras de diversidad funcional y filogenética, lo que sugiere su implicación en procesos competitivos de limitación de la semejanza. Una pequeña proporción de las especies apareció como repelente de la diversidad funcional y filogenética, lo que sugiere su implicación en un proceso de filtrado de hábitat. En este estudio pone de relieve cómo el análisis de las dimensiones alternativas de la biodiversidad, como la diversidad funcional y filogenética, puede ayudarnos a entender la co-ocurrencia de especies en diversos ensambles de comunidad. Todos los resultados de este estudio aportan nuevas evidencias de los procesos de ensamblaje de la comunidad de los Bosques Estacionalmente secos y como las variables ambientales y la competencia juegan un papel importante en la estructuración de la comunidad. ABSTRACT The traditional concept of the rules assembly for species communities reflects the idea that species do not co-occur at random but are restricted in their co-occurrence by interspecific competition or an environmental filter. In this thesis, I addressed the importance of the se processes in the assembly of plant communities in the dry forests of southern Ecuador. This study was conducted in the biogeographic region of Tumbesina has the largest concentration of well-conserved tropical dry forests of southern Ecuador, and is recognized as one of the most important areas of endemism in the world. The climate is characterized by a dry season from May to December and a rainy season from January to April. The annual temperature varies between 20 ° C and 26 ° C and an average annual rainfall between 300 and 700 mm. I first assessed whether the distribution of functional traits at the level of the community is compatible with the existence of an environmental filter (imposed by habitat) or the existence of a limitation on functional similarity imposed by interspecific competition. This analysis was conducted for 58 species of woody plants spread over 109 plots of 10 x 50 m. Specifically, I compared the distribution of values of five functional traits (maximum height, wood density, specific leaf area, leaf size and mass of the seed), via selected statistical properties (range, variance, kurtosis and analyzed the standard deviation of the distribution of the closest functional species) distances and compared with a expected distribution under a null model of no competition. The results support that both environmental filtering and a limitation on trait similarity affect the assembly of plant communities in dry forests Tumbesina. My second chapter evaluated whether variation in functional diversity is conditioned by environmental gradients. In particular, I tested whether it decreases in the most stressful environments because of environmental filters, or if, on the contrary, functional diversity is greater in more benign environments where competition becomes more important (notwithstanding possible changes to this general pattern due to facilitation). To address this theme I analyzed changes in both the functional diversity (maximum height, wood density, specific leaf area, leaf size and mass of the seed) and the phylogenetic diversity, along a gradient of climatic stress in Tumbes forests. The observed patterns of variation were contrasted against the diversity expected under a completely random null model of community assembly. Only the diversity of leaf sizes followed the hypothesis decreasing in as trait variation abiotic stress increased, while the other functional traits multivariate functional diversity and phylogenetic diversity no showed significant variation along the environmental gradient. The third theme assess whether the processes that organize the functional structure of the community operate at different spatial scales. To do this I mapped all the trees and shrubs of more than 5 cm in diameter within a plot of 9 hectares of dry forest and functionally classified each species. The plot was divided into subplots of different sizes, obtaining subplots of six different spatial scales. I found aggregation of similar functional strategies at small scales, which may indicate the existence of environmental filters or competitive processes that correspond to the optimal strategy for these fine scales. Finally, with the same information from the permanent plot of 9 ha, I evaluated the effect and behavior of individual species on the organization of the taxonomic, functional and phylogenetic diversity. The analysis comprised three spatial summary functions: ISAR- for taxonomic level analysis, IFDAR for functional level analysis, and IPSVAR for phylogenetic level analysis, in each case the pattern of diversity was contrasted against null models that randomly reallocate describe the spatial distribution of individual species and their traits. For all spatial scales considering ISAR, IFDAR and IPSVAR, most species behaved as neutral, i.e. they are surrounded by the diversity of other traits similar to that expected under a null model. However, some species appeared as accumulator of functional and phylogenetic diversity, suggesting that they may play a role in competitive processes that limiting similarity. A small proportion of the species appeared as repellent of functional and phylogenetic diversity, suggesting their involvement in a process of habitat filtering. These analysis highlights that the analysis of alternative dimensions of biodiversity, such as functional and phylogenetic diversity, can help us understand the co-occurrence of species in the assembly of biotic communities. All results of this study provide further evidence of the processes of assembly of the community of the seasonally dry forests as environmental variables and competition play an important role in structuring the community.

MBIS: Multivariate Bayesian Image Segmentation Tool

We present MBIS (Multivariate Bayesian Image Segmentation tool), a clustering tool based on the mixture of multivariate normal distributions model. MBIS supports multi-channel bias field correction based on a B-spline model. A second methodological novelty is the inclusion of graph-cuts optimization for the stationary anisotropic hidden Markov random field model. Along with MBIS, we release an evaluation framework that contains three different experiments on multi-site data. We first validate the accuracy of segmentation and the estimated bias field for each channel. MBIS outperforms a widely used segmentation tool in a cross-comparison evaluation. The second experiment demonstrates the robustness of results on atlas-free segmentation of two image sets from scan-rescan protocols on 21 healthy subjects. Multivariate segmentation is more replicable than the monospectral counterpart on T1-weighted images. Finally, we provide a third experiment to illustrate how MBIS can be used in a large-scale study of tissue volume change with increasing age in 584 healthy subjects. This last result is meaningful as multivariate segmentation performs robustly without the need for prior knowledge.

Economics of Wheat in Egypt

Este estudio pretende estimar la eficiencia y la productividad de las principales provincias de la producción de trigo en Egipto. Los datos utilizados en este estudio son datos de panel a nivel de provincias del período 1990-2012, obtenidos del Ministerio de Agricultura y Recuperación Tierras, y de la Agencia Central de Movilización Pública y Estadística, Egipto. Se aplica el enfoque de fronteras estocásticas para medir la eficiencia (función de producción de Cobb-Douglas) y se emplean las especificaciones de Battese y Coelli (1992) y (1995). También se utiliza el índice de Malmquist como una aproximación no paramétrica (Análisis de Envolvente de Datos) para descomponer la productividad total de los factores de las principales provincias productoras de trigo en Egipto en cambio técnico y cambio de eficiencia. El coeficiente de tierra es positivo y significativo en los dos especificaciones Battese y Coelli (1992) y (1995), lo que implica que aumentar la tierra para este cultivo aumentaría significativamente la producción de trigo. El coeficiente de trabajo es positivo y significativo en la especificación de Battese y Coelli (1992), mientras que es positivo y no significativo en la especificación de Battese y Coelli (1995). El coeficiente de la maquinaria es negativo y no significativo en las dos especificaciones de Battese y Coelli (1992) y (1995). El coeficiente de cambio técnico es positivo y no significativo en la especificación de Battese y Coelli (1992), mientras que es positiva y significativo en la especificación de Battese y Coelli (1995). Las variables de efectos del modelo de ineficiencia Battese y Coelli (1995) indican que no existe impacto de las diferentes provincias en la producción de trigo en Egipto; la ineficiencia técnica de la producción de trigo tendió a disminuir durante el período de estudio; y no hay ningún impacto de género en la producción de trigo en Egipto. Los niveles de eficiencia técnica varían entre las diferentes provincias para las especificaciones de Battese y Coelli (1992) y (1995); el nivel mínimo medio de eficiencia técnica es 91.61% en la provincia de Fayoum, mientras que el nivel máximo medio de la eficiencia técnica es 98.69% en la provincia de Dakahlia. La eficiencia técnica toma un valor medio de 95.37%, lo que implica poco potencial para mejorar la eficiencia de uso de recursos en la producción de trigo. La TFPCH de la producción de trigo en Egipto durante el período 1990-2012 tiene un valor menor que uno y muestra un declive. Esta disminución es debida más al componente de cambio técnico que al componente de cambio de eficiencia. La disminución de TFPCH mejora con el tiempo. La provincia de Menoufia tiene la menor disminución en TFPCH, 6.5%, mientras que dos provincias, Sharkia y Dakahlia, son las que más disminuyen en TFPCH, 13.1%, en cada uno de ellas. Menos disminución en TFPCH ocurre en el período 2009-2010, 0.3%, mientras que más disminución se produce en TFPCH en el período 1990-1991, 38.9%. La disminución de la PTF de la producción de trigo en Egipto se atribuye principalmente a la mala aplicación de la tecnología. ABSTRACT The objectives of this study are to estimate the efficiency and productivity of the main governorates of wheat production in Egypt. The data used in this study is a panel data at the governorates level, it represents the time period 1990-2012 and taken from the Ministry of Agriculture and Land Reclamation, and the Central Agency for Public Mobilization and Statistics, Egypt. We apply the stochastic frontier approach for efficiency measurement (Cobb-Douglas production function) and the specifications of Battese and Coelli (1992) and (1995) are employed. Also we use Malmquist TFP index as a non-parametric approach (DEA) to decompose total factor productivity of the main governorates of wheat production in Egypt into technical change and efficiency change. The coefficient of land is positive and significant at Battese and Coelli (1992) and (1995) specifications, implying that increasing the wheat area could significantly enhance the production of wheat. The coefficient of labor is positive and significant at Battese and Coelli (1992) specification, while it is positive and insignificant at Battese and Coelli (1995) specification. The coefficient of machinery is negative and insignificant at the specifications of Battese and Coelli (1992) and (1995). The technical change coefficient is positive and insignificant at Battese and Coelli (1992) specification, while it is positive and significant at Battese and Coelli (1995) specification. The variables of the inefficiency effect model indicate that there is no impact from the location of the different governorates on wheat production in Egypt, the technical inefficiency of wheat production tended to decrease through the period of study, and there is no impact from the gender on wheat production in Egypt. The levels of technical efficiency vary among the different governorates for the specifications of Battese and Coelli (1992) and (1995); the minimum mean level of technical efficiency is 91.61% at Fayoum governorate, while the maximum mean level of technical efficiency is 98.69% at Dakahlia governorate. The technical efficiency takes an average value of 95.37%, this implying that little potential exists to improve resource use efficiency in wheat production. The TFPCH of wheat production in Egypt during the time period 1990-2012 has a value less than one and shows a decline; this decline is due mainly to the technical change component than the efficiency change component. The decline in TFPCH is generally improves over time. Menoufia governorate has the least declining in TFPCH by 6.5%, while two governorates, Sharkia and Dakahlia have the most declining in TFPCH by 13.1% for each of them. The least declining in TFPCH occurred at the period 2009- 2010 by 0.3%, while the most declining in TFPCH occurred at the period 1990-1991 by 38.9%. The declining in TFP of wheat production in Egypt is attributed mainly to poor application of technology.

A constitutive model for the in-plane mechanical behavior of nonwoven fabrics

A constitutive model is presented for the in-plane mechanical behavior of nonwoven fabrics. The model is developed within the context of the finite element method and provides the constitutive response for a mesodomain of the fabric corresponding to the area associated to a finite element. The model is built upon the ensemble of three blocks, namely fabric, fibers and damage. The continuum tensorial formulation of the fabric response rigorously takes into account the effect of fiber rotation for large strains and includes the nonlinear fiber behavior. In addition, the various damage mechanisms experimentally observed (bond and fiber fracture, interfiber friction and fiber pull-out) are included in a phenomenological way and the random nature of these materials is also taken into account by means of a Monte Carlo lottery to determine the damage thresholds. The model results are validated with recent experimental results on the tensile response of smooth and notched specimens of a polypropylene nonwoven fabric.

Agent-based model for the effect of curing temperature on cement hydration

The agent-based model presented here, comprises an algorithm that computes the degree of hydration, the water consumption and the layer thickness of C-S-H gel as functions of time for different temperatures and different w/c ratios. The results are in agreement with reported experimental studies, demonstrating the applicability of the model. As the available experimental results regarding elevated curing temperature are scarce, the model could be recalibrated in the future. Combining the agent-based computational model with TGA analysis, a semiempirical method is achieved to be used for better understanding the microstructure development in ordinary cement pastes and to predict the influence of temperature on the hydration process.

Methodology for assessing regional economic impacts of charging HGVs in Spain: an integrated approach through a random utility based multiregional input-output and a road transportation network model

An integrated approach composed of a random utility-based multiregional input-output model and a road transport network model was developed for evaluating the application of a fee to heavy-goods vehicles (HGVs) in Spain. For this purpose, a distance-based charge scenario (in euros per vehicle kilometer) for HGVs was evaluated for a selected motorway network in Spain. Although the aim of this charging policy was to increase the efficiency of transport, the approach strongly identified direct and indirect impacts on the regional economy. Estimates of the magnitude and extent of indirect effects on aggregated macroeconomic indicators (employment and gross domestic product) are provided. The macroeconomic effects of the charging policy were found to be positive for some regions and negative for other regions.

A general framework to testing the effect of transport policy measures to achieve a modal shift: a sequental hybrid model

In order to achieve to minimize car-based trips, transport planners have been particularly interested in understanding the factors that explain modal choices. In the transport modelling literature there has been an increasing awareness that socioeconomic attributes and quantitative variables are not sufficient to characterize travelers and forecast their travel behavior. Recent studies have also recognized that users? social interactions and land use patterns influence travel behavior, especially when changes to transport systems are introduced, but links between international and Spanish perspectives are rarely deal. In this paper, factorial and path analyses through a Multiple-Indicator Multiple-Cause (MIMIC) model are used to understand and describe the relationship between the different psychological and environmental constructs with social influence and socioeconomic variables. The MIMIC model generates Latent Variables (LVs) to be incorporated sequentially into Discrete Choice Models (DCM) where the levels of service and cost attributes of travel modes are also included directly to measure the effect of the transport policies that have been introduced in Madrid during the last three years in the context of the economic crisis. The data used for this paper are collected from a two panel smartphone-based survey (n=255 and 190 respondents, respectively) of Madrid.

Influencia del viento en los ensayos de rebase en modelo físico a escala reducida = Wind effect on wave overtopping in physical model test

El artículo que se presenta a continuación recoge la ampliación de una investigación previa sobre los rebases en los espaldones de los diques verticales y en talud. Para ello se han realizado una serie de ensayos en modelo físico a escala reducida sobre la sección vertical del Dique de Levante de Málaga, cuyo objeto principal fue analizar el efecto del viento en el rebase. Los ensayos se han realizado generando oleaje con y sin viento, comparando los resultados obtenidos en cada una de las dos situaciones y se han llevado a cabo en el Canal de Oleaje y Viento de Gran Escala existente en el Laboratorio de Experimentación Marítima del Centro de Estudios de Puertos y Costas del CEDEX. The purpose of the research work as summarised in this article, resulting from diverse work carried out at the CEDEX, is to make an analysis of the influence of wind effects on the wave overtopping of vertical sea-walls. The results obtained in the Málaga´s Levante breakwater tests are presented here. The test was carried out in large sized facilities where waves and wind are generated.

Comparative study of the effect of several trains on the ballast rotation

The ballast pick-up (or ballast train-induced-wind erosion (BTE)) phenomenon is a limiting factor for the maximum allowed operational train speed. The determination of the conditions for the initiation of the motion of the ballast stones due to the wind gust created by high-speed trains is critical to predict the start of ballast pick-up because, once the motion is initiated, a saltation-like chain reaction can take place. The aim of this paper is to present a model to evaluate the effect of a random aerodynamic impulse on stone motion initiation, and an experimental study performed to check the capability of the proposed model to classify trains by their effect on the ballast due to the flow generated by the trains. A measurement study has been performed at kp 69 + 500 on the Madrid – Barcelona High Speed Line. The obtained results show the feasibility of the proposed method, and contribute to a technique for BTE characterization, which can be relevant for the development of train interoperability standards