Particle methods parallel implementations by GP-GPU strategies

This paper outlines the problems found in the parallelization of SPH (Smoothed Particle Hydrodynamics) algorithms using Graphics Processing Units. Different results of some parallel GPU implementations in terms of the speed-up and the scalability compared to the CPU sequential codes are shown. The most problematic stage in the GPU-SPH algorithms is the one responsible for locating neighboring particles and building the vectors where this information is stored, since these specific algorithms raise many dificulties for a data-level parallelization. Because of the fact that the neighbor location using linked lists does not show enough data-level parallelism, two new approaches have been pro- posed to minimize bank conflicts in the writing and subsequent reading of the neighbor lists. The first strategy proposes an efficient coordination between CPU-GPU, using GPU algorithms for those stages that allow a straight forward parallelization, and sequential CPU algorithms for those instructions that involve some kind of vector reduction. This coordination provides a relatively orderly reading of the neighbor lists in the interactions stage, achieving a speed-up factor of x47 in this stage. However, since the construction of the neighbor lists is quite expensive, it is achieved an overall speed-up of x41. The second strategy seeks to maximize the use of the GPU in the neighbor's location process by executing a specific vector sorting algorithm that allows some data-level parallelism. Al- though this strategy has succeeded in improving the speed-up on the stage of neighboring location, the global speed-up on the interactions stage falls, due to inefficient reading of the neighbor vectors. Some changes to these strategies are proposed, aimed at maximizing the computational load of the GPU and using the GPU texture-units, in order to reach the maximum speed-up for such codes. Different practical applications have been added to the mentioned GPU codes. First, the classical dam-break problem is studied. Second, the wave impact of the sloshing fluid contained in LNG vessel tanks is also simulated as a practical example of particle methods

Area-delay Trade-offs of Texture Decompressors for a Graphics Processing Unit

Graphics Processing Units have become a booster for the microelectronics industry. However, due to intellectual property issues, there is a serious lack of information on implementation details of the hardware architecture that is behind GPUs. For instance, the way texture is handled and decompressed in a GPU to reduce bandwidth usage has never been dealt with in depth from a hardware point of view. This work addresses a comparative study on the hardware implementation of different texture decompression algorithms for both conventional (PCs and video game consoles) and mobile platforms. Circuit synthesis is performed targeting both a reconfigurable hardware platform and a 90nm standard cell library. Area-delay trade-offs have been extensively analyzed, which allows us to compare the complexity of decompressors and thus determine suitability of algorithms for systems with limited hardware resources.

A computer vision approach for weeds identification through Support Vector Machines

This paper outlines an automatic computervision system for the identification of avena sterilis which is a special weed seed growing in cereal crops. The final goal is to reduce the quantity of herbicide to be sprayed as an important and necessary step for precision agriculture. So, only areas where the presence of weeds is important should be sprayed. The main problems for the identification of this kind of weed are its similar spectral signature with respect the crops and also its irregular distribution in the field. It has been designed a new strategy involving two processes: image segmentation and decision making. The image segmentation combines basic suitable image processing techniques in order to extract cells from the image as the low level units. Each cell is described by two area-based attributes measuring the relations among the crops and weeds. The decision making is based on the SupportVectorMachines and determines if a cell must be sprayed. The main findings of this paper are reflected in the combination of the segmentation and the SupportVectorMachines decision processes. Another important contribution of this approach is the minimum requirements of the system in terms of memory and computation power if compared with other previous works. The performance of the method is illustrated by comparative analysis against some existing strategies.

Rational invariants on the space of all structures of algebras on a two-dimensional vector space

Rational invariants on the space of all structures of algebras on a two-dimensional vector space

Vector spaces of entire functions of unbounded type

Let E be an infinite dimensional complex Banach space. We prove the existence of an infinitely generated algebra, an infinite dimensional closed subspace and a dense subspace of entire functions on E whose non-zero elements are functions of unbounded type. We also show that the τδ topology on the space of all holomorphic functions cannot be obtained as a countable inductive limit of Fr´echet spaces. RESUMEN. Sea E un espacio de Banach complejo de dimensión infinita y sea H(E) el espacio de funciones holomorfas definidas en E. En el artículo se demuestra la existencia de un álgebra infinitamente generada en H(E), un subespacio vectorial en H(E) cerrado de dimensión infinita y un subespacio denso en H(E) cuyos elementos no nulos son funciones de tipo no acotado. También se demuestra que el espacio de funciones holomorfas con la topología ? no es un límite inductivo numberable de espacios de Fréchet.

Comparisson of hydrogen applications for storage and energy vector

For the decades to come can be foreseen that electricity and water will keep be playing a key role in the countries development, both can be considered the most important energy vectors and its control can be crucial for governments, companies and leaders in general. Energy is essential for all human activities and its availability is critical to economic and social development. In particular, electricity, a form of energy, is required to produce goods, to provide medical assistance and basic civic services in education, to assure availability of clean water, to create conducive environment for prosperity and improvement, and to keep an acceptable quality of life. The way in which electricity is generated from different resources varies through the different countries. Nuclear energy controlled within reactors to steam production, gas, fuel-oil and coal fired in power stations, water, solar and wind energy among others are employed, sometimes not very efficiently, to produce electricity. The so call energy mix of an individual country is formed up by the contribution of each resource or form of energy to the electricity generation market of the so country. During the last decade the establishment of proper energy mixes for countries has gained much importance, and energy drivers should enforce long term plans and policies. Hints, reports and guides giving tracks on energy resources contribution are been developed by noticeable organisations like the IEA (International Energy Agency) or the IAEA (International Atomic Energy Agency) and the WEC (World Energy Council). This paper evaluates energy issues the market and countries are facing today regarding energy mix scheduling and panorama. This paper revises and seeks to improve methodology available that are applicable on energy mix plan definition. Key Factors are identified, established and assessed through this paper for the common implementation, the themes driving the future energy mix methodology proposal. Those have a clear influence and are closely related to future environmental policies. Key Factors take into consideration sustainability, energy security, social and economic growth, climate change, air quality and social stability. The strength of the Key Factors application on energy system planning to different countries is contingent on country resources, location, electricity demand and electricity generation industry, technology available, economic situation and prospects, energy policy and regulation

Combining Text and Graphics for Interactive Exploration of Behavior Datasets

Modern sensor technologies and simulators applied to large and complex dynamic systems (such as road traffic networks, sets of river channels, etc.) produce large amounts of behavior data that are difficult for users to interpret and analyze. Software tools that generate presentations combining text and graphics can help users understand this data. In this paper we describe the results of our research on automatic multimedia presentation generation (including text, graphics, maps, images, etc.) for interactive exploration of behavior datasets. We designed a novel user interface that combines automatically generated text and graphical resources. We describe the general knowledge-based design of our presentation generation tool. We also present applications that we developed to validate the method, and a comparison with related work.

A non-persistently transmitted-virus induces a pull?push strategy inits aphid vector to optimize transmission and spread

Plant viruses are known to modify the behaviour of their insect vectors, both directly and indirectly,generally adapting to each type of virus?vector relationship in a way that enhances transmissionefficiency. Here, we report results of three different studies showing how a virus transmitted in a non-persistent (NP) manner (Cucumber mosaic virus; CMV, Cucumovirus) can induce changes in its host plant,cucumber (Cucumis sativus cv. Marumba) that modifies the behaviour of its aphid vector (Aphis gossypiiGlover; Hemiptera: Aphididae) in a way that enhances virus transmission and spread non-viruliferousaphids changed their alighting, settling and probing behaviour activities over time when exposed toCMV-infected and mock-inoculated cucumber plants. Aphids exhibited no preference to migrate fromCMV-infected to mock-inoculated plants at short time intervals (1, 10 and 30 min after release), butshowed a clear shift in preference to migrate from CMV-infected to mock-inoculated plants 60 min afterrelease. Our free-choice preference assays showed that A. gossypii alates preferred CMV-infected overmock-inoculated plants at an early stage (30 min), but this behaviour was reverted at a later stage andaphids preferred to settle and reproduce on mock-inoculated plants. The electrical penetration graph(EPG) technique revealed a sharp change in aphid probing behaviour over time when exposed to CMV-infected plants. At the beginning (first 15 min) aphid vectors dramatically increased the number of shortsuperficial probes and intracellular punctures when exposed to CMV-infected plants. At a later stage (sec-ond hour of recording) aphids diminished their feeding on CMV-infected plants as indicated by much lesstime spent in phloem salivation and ingestion (E1 and E2). This particular probing behaviour includingan early increase in the number of short superficial probes and intracellular punctures followed by aphloem feeding deterrence is known to enhance the transmission efficiency of viruses transmitted in aNP manner. We conclude that CMV induces specific changes in a plant host that modify the alighting,settling and probing behaviour of its main vector A. gossypii, leading to optimum transmission and spreadof the virus. Our findings should be considered when modelling the spread of viruses transmitted in a NPmanner.

Interpretación geométrica de redes neuronales recurrentes discretas mediante grafos completos

El objetivo del presente trabajo de investigación es explorar nuevas técnicas de implementación, basadas en grafos, para las Redes de Neuronas, con el fin de simplificar y optimizar las arquitecturas y la complejidad computacional de las mismas. Hemos centrado nuestra atención en una clase de Red de Neuronas: las Redes de Neuronas Recursivas (RNR), también conocidas como redes de Hopfield. El problema de obtener la matriz sináptica asociada con una RNR imponiendo un determinado número de vectores como puntos fijos, no está en absoluto resuelto, el número de vectores prototipo que pueden ser almacenados en la red, cuando se utiliza la ley de Hebb, es bastante limitado, la red se satura rápidamente cuando se pretende almacenar nuevos prototipos. La ley de Hebb necesita, por tanto, ser revisada. Algunas aproximaciones dirigidas a solventar dicho problema, han sido ya desarrolladas. Nosotros hemos desarrollado una nueva aproximación en la forma de implementar una RNR en orden a solucionar estos problemas. La matriz sináptica es obtenida mediante la superposición de las componentes de los vectores prototipo, sobre los vértices de un Grafo, lo cual puede ser también interpretado como una coloración de dicho grafo. Cuando el periodo de entrenamiento se termina, la matriz de adyacencia del Grafo Resultante o matriz de pesos, presenta ciertas propiedades por las cuales dichas matrices serán llamadas tetraédricas. La energía asociada a cualquier estado de la red es representado por un punto (a,b) de R2. Cada uno de los puntos de energía asociados a estados que disten lo mismo del vector cero está localizado sobre la misma línea de energía de R2. El espacio de vectores de estado puede, por tanto, clasificarse en n clases correspondientes a cada una de las n diferentes distancias que puede tener cualquier vector al vector cero. La matriz (n x n) de pesos puede reducirse a un n-vector; de esta forma, tanto el tiempo de computación como el espacio de memoria requerido par almacenar los pesos, son simplificados y optimizados. En la etapa de recuperación, es introducido un vector de parámetros R2, éste es utilizado para controlar la capacidad de la red: probaremos que lo mayor es la componente a¡, lo menor es el número de puntos fijos pertenecientes a la línea de energía R¡. Una vez que la capacidad de la red ha sido controlada mediante este parámetro, introducimos otro parámetro, definido como la desviación del vector de pesos relativos, este parámetro sirve para disminuir ostensiblemente el número de parásitos. A lo largo de todo el trabajo, hemos ido desarrollando un ejemplo, el cual nos ha servido para ir corroborando los resultados teóricos, los algoritmos están escritos en un pseudocódigo, aunque a su vez han sido implamentados utilizando el paquete Mathematica 2.2., mostrándolos en un volumen suplementario al texto.---ABSTRACT---The aim of the present research is intended to explore new specifícation techniques of Neural Networks based on Graphs to be used in the optimization and simplification of Network Architectures and Computational Complexhy. We have focused our attention in a, well known, class of Neural Networks: the Recursive Neural Networks, also known as Hopfield's Neural Networks. The general problem of constructing the synaptic matrix associated with a Recursive Neural Network imposing some vectors as fixed points is fer for completery solved, the number of prototype vectors (learning patterns) which can be stored by Hebb's law is rather limited and the memory will thus quickly reach saturation if new prototypes are continuously acquired in the course of time. Hebb's law needs thus to be revised in order to allow new prototypes to be stored at the expense of the older ones. Some approaches related with this problem has been developed. We have developed a new approach of implementing a Recursive Neural Network in order to sob/e these kind of problems, the synaptic matrix is obtained superposing the components of the prototype vectors over the vértices of a Graph which may be interpreted as a coloring of the Graph. When training is finished the adjacency matrix of the Resulting Graph or matrix of weights presents certain properties for which it may be called a tetrahedral matrix The energy associated to any possible state of the net is represented as a point (a,b) in R2. Every one of the energy points associated with state-vectors having the same Hamming distance to the zero vector are located over the same energy Une in R2. The state-vector space may be then classified in n classes according to the n different possible distances firom any of the state-vectors to the zero vector The (n x n) matrix of weights may also be reduced to a n-vector of weights, in this way the computational time and the memory space required for obtaining the weights is optimized and simplified. In the recall stage, a parameter vectora is introduced, this parameter is used for controlling the capacity of the net: it may be proved that the bigger is the r, component of J, the lower is the number of fixed points located in the r¡ energy line. Once the capacity of the net has been controlled by the ex parameter, we introduced other parameter, obtained as the relative weight vector deviation parameter, in order to reduce the number of spurious states. All along the present text, we have also developed an example, which serves as a prove for the theoretical results, the algorithms are shown in a pseudocode language in the text, these algorithm so as the graphics have been developed also using the Mathematica 2.2. mathematical package which are shown in a supplementary volume of the text.

Novel educational assessment for building structures: Automatic evaluation of on-line graphics

This article presents a new automatic evaluation for on-line graphics, its application and the numerous advantages achieved applying this developed correcting method. The software application developed by the Innovation in Education Group “E4”, from the Technical University of Madrid, is oriented for the online self-assessment of the graphic drawings that students carry out as continuous training. The adaptation to the European Higher Educational Area is an important opportunity to research about the possibilities of on-line education assessment. In this way, a new software tool has been developed for continuous self-testing by undergraduates. Using this software it is possible to evaluate the graphical answer of the students. Thus, the drawings made on-line by students are automatically corrected according to the geometry (straight lines, sloping lines or second order curves) and by sizes (depending on the specific values which define the graphics).

EPA-0882 - Prediction of diagnosis of early-onset schizophrenia spectrum disorders using support vector machines

To develop a Support Vector Machine (SVM) algorithm as a predictive tool for diagnostic outcome in patients with FE-EOP, based on clinical and biomedical data at the emergence of the illness.

Towards a unified sentiment lexicon based on graphics processing units

This paper presents an approach to create what we have called a Unified Sentiment Lexicon (USL). This approach aims at aligning, unifying, and expanding the set of sentiment lexicons which are available on the web in order to increase their robustness of coverage. One problem related to the task of the automatic unification of different scores of sentiment lexicons is that there are multiple lexical entries for which the classification of positive, negative, or neutral {P, Z, N} depends on the unit of measurement used in the annotation methodology of the source sentiment lexicon. Our USL approach computes the unified strength of polarity of each lexical entry based on the Pearson correlation coefficient which measures how correlated lexical entries are with a value between 1 and -1, where 1 indicates that the lexical entries are perfectly correlated, 0 indicates no correlation, and -1 means they are perfectly inversely correlated and so is the UnifiedMetrics procedure for CPU and GPU, respectively. Another problem is the high processing time required for computing all the lexical entries in the unification task. Thus, the USL approach computes a subset of lexical entries in each of the 1344 GPU cores and uses parallel processing in order to unify 155802 lexical entries. The results of the analysis conducted using the USL approach show that the USL has 95.430 lexical entries, out of which there are 35.201 considered to be positive, 22.029 negative, and 38.200 neutral. Finally, the runtime was 10 minutes for 95.430 lexical entries; this allows a reduction of the time computing for the UnifiedMetrics by 3 times.

3D simulation of complex shading affecting PV systems taking benefit from the power of graphics cards developed for the video game industry

Shading reduces the power output of a photovoltaic (PV) system. The design engineering of PV systems requires modeling and evaluating shading losses. Some PV systems are affected by complex shading scenes whose resulting PV energy losses are very difficult to evaluate with current modeling tools. Several specialized PV design and simulation software include the possibility to evaluate shading losses. They generally possess a Graphical User Interface (GUI) through which the user can draw a 3D shading scene, and then evaluate its corresponding PV energy losses. The complexity of the objects that these tools can handle is relatively limited. We have created a software solution, 3DPV, which allows evaluating the energy losses induced by complex 3D scenes on PV generators. The 3D objects can be imported from specialized 3D modeling software or from a 3D object library. The shadows cast by this 3D scene on the PV generator are then directly evaluated from the Graphics Processing Unit (GPU). Thanks to the recent development of GPUs for the video game industry, the shadows can be evaluated with a very high spatial resolution that reaches well beyond the PV cell level, in very short calculation times. A PV simulation model then translates the geometrical shading into PV energy output losses. 3DPV has been implemented using WebGL, which allows it to run directly from a Web browser, without requiring any local installation from the user. This also allows taken full benefits from the information already available from Internet, such as the 3D object libraries. This contribution describes, step by step, the method that allows 3DPV to evaluate the PV energy losses caused by complex shading. We then illustrate the results of this methodology to several application cases that are encountered in the world of PV systems design. Keywords: 3D, modeling, simulation, GPU, shading, losses, shadow mapping, solar, photovoltaic, PV, WebGL

Implementación de una Support Vector Machine en RVC – CAL para imágenes hiperespectrales

El análisis de imágenes hiperespectrales permite obtener información con una gran resolución espectral: cientos de bandas repartidas desde el espectro infrarrojo hasta el ultravioleta. El uso de dichas imágenes está teniendo un gran impacto en el campo de la medicina y, en concreto, destaca su utilización en la detección de distintos tipos de cáncer. Dentro de este campo, uno de los principales problemas que existen actualmente es el análisis de dichas imágenes en tiempo real ya que, debido al gran volumen de datos que componen estas imágenes, la capacidad de cómputo requerida es muy elevada. Una de las principales líneas de investigación acerca de la reducción de dicho tiempo de procesado se basa en la idea de repartir su análisis en diversos núcleos trabajando en paralelo. En relación a esta línea de investigación, en el presente trabajo se desarrolla una librería para el lenguaje RVC – CAL – lenguaje que está especialmente pensado para aplicaciones multimedia y que permite realizar la paralelización de una manera intuitiva – donde se recogen las funciones necesarias para implementar el clasificador conocido como Support Vector Machine – SVM. Cabe mencionar que este trabajo complementa el realizado en [1] y [2] donde se desarrollaron las funciones necesarias para implementar una cadena de procesado que utiliza el método unmixing para procesar la imagen hiperespectral. En concreto, este trabajo se encuentra dividido en varias partes. La primera de ellas expone razonadamente los motivos que han llevado a comenzar este Trabajo de Investigación y los objetivos que se pretenden conseguir con él. Tras esto, se hace un amplio estudio del estado del arte actual y, en él, se explican tanto las imágenes hiperespectrales como sus métodos de procesado y, en concreto, se detallará el método que utiliza el clasificador SVM. Una vez expuesta la base teórica, nos centraremos en la explicación del método seguido para convertir una versión en Matlab del clasificador SVM optimizado para analizar imágenes hiperespectrales; un punto importante en este apartado es que se desarrolla la versión secuencial del algoritmo y se asientan las bases para una futura paralelización del clasificador. Tras explicar el método utilizado, se exponen los resultados obtenidos primero comparando ambas versiones y, posteriormente, analizando por etapas la versión adaptada al lenguaje RVC – CAL. Por último, se aportan una serie de conclusiones obtenidas tras analizar las dos versiones del clasificador SVM en cuanto a bondad de resultados y tiempos de procesado y se proponen una serie de posibles líneas de actuación futuras relacionadas con dichos resultados. ABSTRACT. Hyperspectral imaging allows us to collect high resolution spectral information: hundred of bands covering from infrared to ultraviolet spectrum. These images have had strong repercussions in the medical field; in particular, we must highlight its use in cancer detection. In this field, the main problem we have to deal with is the real time analysis, because these images have a great data volume and they require a high computational power. One of the main research lines that deals with this problem is related with the analysis of these images using several cores working at the same time. According to this investigation line, this document describes the development of a RVC – CAL library – this language has been widely used for working with multimedia applications and allows an optimized system parallelization –, which joins all the functions needed to implement the Support Vector Machine – SVM - classifier. This research complements the research conducted in [1] and [2] where the necessary functions to implement the unmixing method to analyze hyperspectral images were developed. The document is divided in several chapters. The first of them introduces the motivation of the Master Thesis and the main objectives to achieve. After that, we study the state of the art of some technologies related with this work, like hyperspectral images, their processing methods and, concretely, the SVM classifier. Once we have exposed the theoretical bases, we will explain the followed methodology to translate a Matlab version of the SVM classifier optimized to process an hyperspectral image to RVC – CAL language; one of the most important issues in this chapter is that a sequential implementation is developed and the bases of a future parallelization of the SVM classifier are set. At this point, we will expose the results obtained in the comparative between versions and then, the results of the different steps that compose the SVM in its RVC – CAL version. Finally, we will extract some conclusions related with algorithm behavior and time processing. In the same way, we propose some future research lines according to the results obtained in this document.

Vector Boolean Functions: Applications in Symmetric Cryptography

Esta tesis establece los fundamentos teóricos y diseña una colección abierta de clases C++ denominada VBF (Vector Boolean Functions) para analizar funciones booleanas vectoriales (funciones que asocian un vector booleano a otro vector booleano) desde una perspectiva criptográfica. Esta nueva implementación emplea la librería NTL de Victor Shoup, incorporando nuevos módulos que complementan a las funciones de NTL, adecuándolas para el análisis criptográfico. La clase fundamental que representa una función booleana vectorial se puede inicializar de manera muy flexible mediante diferentes estructuras de datas tales como la Tabla de verdad, la Representación de traza y la Forma algebraica normal entre otras. De esta manera VBF permite evaluar los criterios criptográficos más relevantes de los algoritmos de cifra en bloque y de stream, así como funciones hash: por ejemplo, proporciona la no-linealidad, la distancia lineal, el grado algebraico, las estructuras lineales, la distribución de frecuencias de los valores absolutos del espectro Walsh o del espectro de autocorrelación, entre otros criterios. Adicionalmente, VBF puede llevar a cabo operaciones entre funciones booleanas vectoriales tales como la comprobación de igualdad, la composición, la inversión, la suma, la suma directa, el bricklayering (aplicación paralela de funciones booleanas vectoriales como la empleada en el algoritmo de cifra Rijndael), y la adición de funciones coordenada. La tesis también muestra el empleo de la librería VBF en dos aplicaciones prácticas. Por un lado, se han analizado las características más relevantes de los sistemas de cifra en bloque. Por otro lado, combinando VBF con algoritmos de optimización, se han diseñado funciones booleanas cuyas propiedades criptográficas son las mejores conocidas hasta la fecha. ABSTRACT This thesis develops the theoretical foundations and designs an open collection of C++ classes, called VBF, designed for analyzing vector Boolean functions (functions that map a Boolean vector to another Boolean vector) from a cryptographic perspective. This new implementation uses the NTL library from Victor Shoup, adding new modules which complement the existing ones making VBF better suited for cryptography. The fundamental class representing a vector Boolean function can be initialized in a flexible way via several alternative types of data structures such as Truth Table, Trace Representation, Algebraic Normal Form (ANF) among others. This way, VBF allows the evaluation of the most relevant cryptographic criteria for block and stream ciphers as well as for hash functions: for instance, it provides the nonlinearity, the linearity distance, the algebraic degree, the linear structures, the frequency distribution of the absolute values of the Walsh Spectrum or the Autocorrelation Spectrum, among others. In addition, VBF can perform operations such as equality testing, composition, inversion, sum, direct sum, bricklayering (parallel application of vector Boolean functions as employed in Rijndael cipher), and adding coordinate functions of two vector Boolean functions. This thesis also illustrates the use of VBF in two practical applications. On the one hand, the most relevant properties of the existing block ciphers have been analysed. On the other hand, by combining VBF with optimization algorithms, new Boolean functions have been designed which have the best known cryptographic properties up-to-date.