A critical investigation of the Tanford-Kirkwood scheme by means of Monte Carlo simulations


Autoria(s): Da Silva, FLB; Jonsson, B.; Penfold, R.
Contribuinte(s)

Universidade Estadual Paulista (UNESP)

Data(s)

20/05/2014

20/05/2014

01/07/2001

Resumo

Monte Carlo simulations are used to assess the adequacy of the Tanford-Kirkwood prescription for electrostatic interactions in macromolecules. Within a continuum dielectric framework, the approach accurately describes salt screening of electrostatic interactions for moderately charged systems consistent with common proteins at physiological conditions. The limitations of the Debye-Huckel theory, which forms the statistical mechanical basis for the Tanford-Kirkwood result, become apparent for highly charged systems. It is shown, both by an analysis of the Debye-Huckel theory and by numerical simulations, that the difference in dielectric permittivity between macromolecule and surrounding solvent does not play a significant role for salt effects if the macromolecule is highly charged. By comparison to experimental data, the continuum dielectric model (combined with either an approximate effective Hamiltonian as in the Tanford-Kirkwood treatment or with exact Monte Carlo simulations) satisfactorily predicts the effects of charge mutation on metal ion binding constants, but only if the macromolecule and solvent are assigned the same or similar permittivities.

Formato

1415-1425

Identificador

http://dx.doi.org/10.1110/ps.42601

Protein Science. Plainview: Cold Spring Harbor Lab Press, v. 10, n. 7, p. 1415-1425, 2001.

0961-8368

http://hdl.handle.net/11449/35871

10.1110/ps.42601

WOS:000169457200014

WOS000169457200014.pdf

Idioma(s)

eng

Publicador

Cold Spring Harbor Lab Press

Relação

Protein Science

Direitos

openAccess

Palavras-Chave #electrostatic interactions #Debye-Huckel #low dielectric cavity #computer simulations #continuum model #proteins model
Tipo

info:eu-repo/semantics/article