Web-makrot ja käyttäjäautomaatio web-sovelluksessa: prototyypin suunnittelu ja toteutus

Tämän kandidaatintyön aiheena on web-sovelluksen käyttäjäautomaatio web-makrojen avulla. Työssä esitellään prototyyppitoteutus SaaS-sovellukseen kohdistetusta web-makrojärjestelmästä. Työn teoriaosa esittelee web-automaation ja web-ympäristön keskeisen teknologian. Ratkaisuosa pohjustaa ratkaisuun käytetyn lähestymistavan, esittelee työn prototyyppiratkaisun ja arvioi ratkaisun lopputulosta. Lopputuloksena havaitaan, että prototyyppiratkaisu onnistuu selvittämään makrotoiminnallisuuden toteuttamiseen liittyvät tekniset haasteet. Ratkaisun merkittävimmäksi tekniseksi haasteeksi arvioidaan selainyhteensopivuuden saavutus ja ylläpito. Ratkaisun hyödynnettävyys koko web-sovelluksen mittakaavassa todetaan kuitenkin heikoksi, koska sovelluksen liiketoimintalogiikka rajoittaa makroparadigman käyttöä.

SwissTargetPrediction: a web server for target prediction of bioactive small molecules.

Bioactive small molecules, such as drugs or metabolites, bind to proteins or other macro-molecular targets to modulate their activity, which in turn results in the observed phenotypic effects. For this reason, mapping the targets of bioactive small molecules is a key step toward unraveling the molecular mechanisms underlying their bioactivity and predicting potential side effects or cross-reactivity. Recently, large datasets of protein-small molecule interactions have become available, providing a unique source of information for the development of knowledge-based approaches to computationally identify new targets for uncharacterized molecules or secondary targets for known molecules. Here, we introduce SwissTargetPrediction, a web server to accurately predict the targets of bioactive molecules based on a combination of 2D and 3D similarity measures with known ligands. Predictions can be carried out in five different organisms, and mapping predictions by homology within and between different species is enabled for close paralogs and orthologs. SwissTargetPrediction is accessible free of charge and without login requirement at http://www.swisstargetprediction.ch.

Pipeline for macro- and microarray analyses

The pipeline for macro- and microarray analyses (PMmA) is a set of scripts with a web interface developed to analyze DNA array data generated by array image quantification software. PMmA is designed for use with single- or double-color array data and to work as a pipeline in five classes (data format, normalization, data analysis, clustering, and array maps). It can also be used as a plugin in the BioArray Software Environment, an open-source database for array analysis, or used in a local version of the web service. All scripts in PMmA were developed in the PERL programming language and statistical analysis functions were implemented in the R statistical language. Consequently, our package is a platform-independent software. Our algorithms can correctly select almost 90% of the differentially expressed genes, showing a superior performance compared to other methods of analysis. The pipeline software has been applied to 1536 expressed sequence tags macroarray public data of sugarcane exposed to cold for 3 to 48 h. PMmA identified thirty cold-responsive genes previously unidentified in this public dataset. Fourteen genes were up-regulated, two had a variable expression and the other fourteen were down-regulated in the treatments. These new findings certainly were a consequence of using a superior statistical analysis approach, since the original study did not take into account the dependence of data variability on the average signal intensity of each gene. The web interface, supplementary information, and the package source code are available, free, to non-commercial users at http://ipe.cbmeg.unicamp.br/pub/PMmA.

Étude du rôle des professionnels de l'information dans les systèmes d'information Web du Gouvernement fédéral canadien

Les professionnels de l'information traversent actuellement une période de redéfinition de leur profession provoquée par la transformation de l'information et des processus informationnels vers un mode de plus en plus électronique. Les systèmes d'information Web (SIW) — c'est-à-dire des systèmes d'information basés sur les technologies Web tels que les sites Web externes, les intranets, les systèmes de commerce électronique et les extranets — font partie des technologies à l'origine de ces changements. Ces systèmes sont de plus en plus adoptés par les organisations et, en particulier, par les gouvernements dans leur volonté de devenir électroniques. Le gouvernement fédéral canadien est reconnu comme un des plus innovateurs en matière de SIW et doit adapter son environnement informationnel, dont font partie les professionnels de l'information, à l'introduction de ces systèmes. Malgré l'innovation que les SIW représentent, peu d'études empiriques ont été menées pour identifier quels sont les intervenants nécessaires à leur mise en place. Aucun consensus n'émerge de la littérature quant à la nature de l'intervention des professionnels de l'information dans ces systèmes. Cette recherche vise à accroître les connaissances sur l'intervention des professionnels de l'information dans les SIW. Pour les besoins de cette recherche, les professionnels de l'information sont définis comme les personnes ayant une maîtrise en bibliothéconomie et sciences de l'information ou toute autre formulation équivalente. Cette recherche étudie quatre questions de recherche qui portent sur : (1) les rôles des professionnels de l'information décrits dans les politiques d'information pan-gouvernementales liées aux SIW ainsi que ceux des autres intervenants mentionnés en lien direct avec les SIW, (2) les types de SIW dans lesquels les professionnels de l'information interviennent, (3) les tâches des professionnels de l'information dans ces SIW, et (4) les autres intervenants qui travaillent dans ces systèmes. Une approche qualitative a été utilisée pour répondre à ces questions et implique quatre modes de collecte des données : (1) des entrevues en profondeur en personne avec des professionnels de l'information impliqués dans des SIW, (2) une analyse des SIW où interviennent ces professionnels de l'information, (3) une analyse des politiques pan-gouvernementales liées aux SIW, et (4) la documentation pertinente. Les professionnels de l'information rencontrés proviennent de sept ministères du gouvernement fédéral canadien, ministères retenus pour leur implication dans les SIW. Les résultats indiquent que les professionnels de l'information rencontrés interviennent dans les SIW aux niveaux micro et macro, c'est-à-dire dans des SIW spécifiques ainsi que globalement au niveau de l'ensemble des SIW d'un ministère ou du gouvernement fédéral. Ces professionnels de l'information sont impliqués dans toutes les dimensions et les phases de développement des SIW. Les tâches liées au contenu sont prédominantes mais les tâches technologiques sont aussi très présentes. Trois variables se dégagent de cette étude qui ont un impact sur l'intervention des professionnels de l'information dans les SIW : les types de SIW, les types de postes occupés par les professionnels de l'information et les types de gouvernance.

L’anomie pharmaco-médicale. Compte-rendu de La prise de décision en éthique clinique : Perspectives micro, méso et macro, sous la direction de Yanick Farmer, Marie-Ève Bouthilier et Delphine Roigt

Compte-rendu / Review

Contemporary Social Movements and the Web

Social Movements are decentralising in the modern world. Web 2.0 has driven latency structures in social movements, and made activism more personal than ever before, but it has also introduced the concept of slacktivism. Micro-Macro relationships are becoming important theoretical frameworks for Social Movement research on the Web - has the Global Justice Movement of 1999 become Global Justice Networks in 2013?

Desarrollo de una página web de apoyo a la docencia en la asignatura de Macroeconomía.

Realizado en la Facultad de Económicas de Valladolid, por 2 profesores del centro, para la asignatura de Macroeconomía. Son varios los objetivos propuestos: hacer que el alumno se acostumbre a usar los abundantes recursos en Internet específicos para esta asignatura; cautivar la atención del alumno por esta asignatura; preparar el banco datos de la página Web; diseñar prácticas de laboratorio a partir de ese banco de datos; diseñar modelos de simulación en hojas de cálculo para los diferentes temas de la asignatura y recopilar artículos y noticias de interés para la asignatura a partir de publicaciones en la red. Durante el 2003 se empezó a preparar el formato básico de la página Web y las transparencias en Power Point, pasarlas a PDF y colgarlas en la página web. En el 2004, se ha seguido recopilando noticias y poniendo modelos de simulación hechos en Excel, junto con enlaces y lecturas. La evaluación, por parte del equipo, es satisfactoria, y la respuesta de los alumnos ha sido buena, como han declarado en encuestas específicas sobre la utilidad de la página.

Personalização de interfaces web para sites institucionais com base em perfis de usuários

A crescente utilização de computadores e a popularização da Internet contribuem cada vez mais para que usuários não especialistas em informática tenham acesso a sistemas computacionais. Tais usuários possuem diferentes habilidades, formações e idades que devem ser levadas em consideração no projeto de uma boa interface. No entanto, no projeto de interfaces web é muito difícil identificar essas características do público alvo, tendo em vista que ele é bastante diversificado. Assim, construir uma interface que atenda os requisitos de todos os usuários de um site não é uma tarefa fácil. Se o projetista tivesse uma maneira de conhecer o seu público, grande parte dos problemas de interação entre usuário e interface poderiam ser resolvidos. Assim, a fim de auxiliar na tarefa de conhecer o público que um site possui, várias técnicas estão disponíveis. Independente das características dos usuários de sites web, a sua principal necessidade consiste em encontrar a informação desejada de modo fácil e rápido. Ainda que seja possível identificar o comportamento de todos os usuários em um site, torna-se difícil disponibilizar informações de forma clara e simples para todos. Para isto, um site adaptativo, que se ajusta automaticamente a cada usuário de acordo com seus padrões de comportamento, é muito útil. Sites adaptativos são desenvolvidos com base em técnicas que auxiliam o projetista na tarefa de personalizar páginas web e, por este motivo, são chamadas de técnicas de personalização. O objetivo desta dissertação é investigar, desenvolver e experimentar uma técnica de personalização de interfaces web voltada especificamente para sites institucionais. Este tipo de site é voltado à divulgação de produtos e serviços de uma instituição e, normalmente, é composto por um grande número de páginas estruturadas de acordo com a estrutura organizacional da instituição. Essa característica permite o agrupamento de usuários por funções ou cargos. A técnica proposta neste trabalho é baseada em perfis de usuários, onde a personalização ocorre em dois níveis: nível de grupos de usuários e nível de usuários individuais, denominados respectivamente de macro perfil e micro perfil. Um estudo de caso realizado na intranet da Agência Nacional de Telecomunicações – ANATEL foi utilizado para aprimorar e validar a técnica. Foi desenvolvido um protótipo de site institucional personalizado, o qual foi disponibilizado, utilizado e avaliado por um grupo de usuários previamente selecionados. O processo de construção do protótipo assim como da avaliação e seus resultados são também descritos neste trabalho.

Web designers, social e-value creation and e-business planning:understanding resistance from conflicting demands

This chapter investigates the conflicting demands faced by web designers in the development of social e-atmospherics that aim to encourage e-value creation, thus strengthening and prolonging market planning strategies. While recent studies have shown that significant shifts are occurring concerning the importance of users’ generated content by way of social e-communication tools (e.g. blogs), these trends are also creating expectations that social and cultural cues ought to become a greater part of e-atmospherics and e-business strategies. Yet, there is growing evidence that organizations are resisting such efforts, fearing that they will lose control of their e-marketing strategy. This chapter contributes to the theory and literature on online cross-cultural understanding and the impact website designers (meso-level) can have on improving the sustainability of e-business planning, departing from recent studies that focus mainly on firms’ e-business plans (macro-level) or final consumers (micro-level). A second contribution is made with respect to online behavior regarding the advancement of technologies that facilitate the development and shaping of new social e-atmospherics that affect users’ behavior and long term e-business strategies through the avoidance of traditional, formal decision making processes and marketing strategy mechanisms implemented by firms. These issues have been highlighted in the literature on the co-production and co-creation of value, which few organizations have thus far integrated in their strategic and pragmatic e-business plans. Drawing upon fifteen online interviews with web designers in the USA, as key non-institutional actors at the meso-level who are developing what future websites will be like, this chapter analyzes ways in which identifying points of resistance and conflicting demands can lead to engagement with the debate over the online co-creation of value and more sustainable future e-business planning. A number of points of resistance to the inclusion of more e-social atmospherics are identified, and the implications for web designers’ roles and web design planning are discussed along with the limitations of the study and potential future research for e-business studies.

Untangling a Web of Lies: Exploring Automated Detection of Deception in Computer-Mediated Communication

Safeguarding organizations against opportunism and severe deception in computer-mediated communication (CMC) presents a major challenge to CIOs and IT managers. New insights into linguistic cues of deception derive from the speech acts innate to CMC. Applying automated text analysis to archival email exchanges in a CMC system as part of a reward program, we assess the ability of word use (micro-level), message development (macro-level), and intertextual exchange cues (meta-level) to detect severe deception by business partners. We empirically assess the predictive ability of our framework using an ordinal multilevel regression model. Results indicate that deceivers minimize the use of referencing and self-deprecation but include more superfluous descriptions and flattery. Deceitful channel partners also over structure their arguments and rapidly mimic the linguistic style of the account manager across dyadic e-mail exchanges. Thanks to its diagnostic value, the proposed framework can support firms’ decision-making and guide compliance monitoring system development.

Progettazione ed implementazione di un'applicazione web di e-learning a supporto della didattica di un corso universitario

Il presente elaborato vuole guidare il lettore lungo l’itinerario che ha previsto la cura e il rilascio di un’applicazione web a tema di e-learning. Greenwich, questo il nome della piattaforma, vuole essere un efficiente strumento di supporto online alla didattica del corso di Basi di Dati dell’Università di Bologna. Lo scopo primario dell’applicazione web è, infatti, quello di fornire agli studenti un mezzo per eseguire query mongoDB in maniera semplice, mirata e su richiesta del docente. Salvo un’approfondita ricerca culturale riguardante il contesto in cui si sviluppa l’applicazione, l’obiettivo primario della trattazione rimane quello di descrivere in modo ordinato i momenti impattanti che hanno segnato, passo dopo passo, le fasi di crescita di Greenwich, raggruppati in tre macro fasi caratteristiche: progettazione, implementazione e validazione.

Iis--integrated Interactome System: A Web-based Platform For The Annotation, Analysis And Visualization Of Protein-metabolite-gene-drug Interactions By Integrating A Variety Of Data Sources And Tools.

High-throughput screening of physical, genetic and chemical-genetic interactions brings important perspectives in the Systems Biology field, as the analysis of these interactions provides new insights into protein/gene function, cellular metabolic variations and the validation of therapeutic targets and drug design. However, such analysis depends on a pipeline connecting different tools that can automatically integrate data from diverse sources and result in a more comprehensive dataset that can be properly interpreted. We describe here the Integrated Interactome System (IIS), an integrative platform with a web-based interface for the annotation, analysis and visualization of the interaction profiles of proteins/genes, metabolites and drugs of interest. IIS works in four connected modules: (i) Submission module, which receives raw data derived from Sanger sequencing (e.g. two-hybrid system); (ii) Search module, which enables the user to search for the processed reads to be assembled into contigs/singlets, or for lists of proteins/genes, metabolites and drugs of interest, and add them to the project; (iii) Annotation module, which assigns annotations from several databases for the contigs/singlets or lists of proteins/genes, generating tables with automatic annotation that can be manually curated; and (iv) Interactome module, which maps the contigs/singlets or the uploaded lists to entries in our integrated database, building networks that gather novel identified interactions, protein and metabolite expression/concentration levels, subcellular localization and computed topological metrics, GO biological processes and KEGG pathways enrichment. This module generates a XGMML file that can be imported into Cytoscape or be visualized directly on the web. We have developed IIS by the integration of diverse databases following the need of appropriate tools for a systematic analysis of physical, genetic and chemical-genetic interactions. IIS was validated with yeast two-hybrid, proteomics and metabolomics datasets, but it is also extendable to other datasets. IIS is freely available online at: http://www.lge.ibi.unicamp.br/lnbio/IIS/.

Acessibilidade dos sítios web dos governos estaduais brasileiros: uma análise quantitativa entre 1996 e 2007

A utilização da web para a disponibilização de informações e serviços de órgãos governamentais para os cidadãos tem se tornado cada vez mais expressiva. Assim, a garantia de que esses conteúdos e serviços possam ser acessíveis a qualquer cidadão é imprescindível, independentemente de necessidades especiais ou de quaisquer outras barreiras. No Brasil, o Decreto-Lei nº5.296/2004 determinou que todos os órgãos governamentais deveriam adaptar seus sítios na web de acordo com critérios de acessibilidade até dezembro de 2005. Com o objetivo de verificar a evolução da acessibilidade ao longo dos anos e como foi o impacto dessa legislação, este artigo analisa a acessibilidade dos sítios dos governos estaduais brasileiros por meio de amostras coletadas entre 1996 e 2007. Foram efetuadas análises por meio de métricas, obtidas por avaliações com ferramentas automáticas. Os resultados indicam que a legislação teve pouco impacto para a melhoria real da acessibilidade dos sítios no período indicado, com uma melhora somente em 2007. Verifica-se que se faz necessário adotar políticas públicas mais efetivas para que as pessoas com necessidades especiais tenham os seus direitos para acesso a informações e aos serviços públicos na web assegurados mais amplamente.

A oferta de serviços de informação por situação de vida em sítios Web de bibliotecas virtuais: em busca da qualidade no atendimento

With the advent and development of technology, mainly in the Internet, more and more electronic services are being offered to customers in all areas of business, especially in the offering of information services, as in virtual libraries. This article proposes a new opportunity to provide services to virtual libraries customers, presenting a methodology for the implementation of electronic services oriented by these customers' life situations. Through analytical observations of some national virtual libraries sites, it could be identified that the offer of services considering life situations and relationship interest situations can promote the service to their customers, providing greater satisfaction and, consequently, improving quality in the offer of information services. The visits to those sites and the critical analysis of the data collected during these visits, supported by bibliographic researches results, have enabled the description of this methodology, concluding that the provision of services on an isolated way or in accordance with the user's profile on sites of virtual libraries is not always enough to ensure the attendance to the needs and expectations of its customers, which suggests the offering of these services considering life situations and relationship interest situations as a complement that adds value to the business of virtual library. This becomes relevant when indicates new opportunities to provide virtual libraries services with quality, serving as a guide to the information providers managers, enabling the offering of new means to access information services by such customers, looking for pro - activity and services integration, in order to solve definitely real problems.

The International LAM Registry: A Component of an Innovative Web-Based Clinician, Researcher, and Patient-Driven Rare Disease Research Platform

Background: A relative friability to capture a sufficiently large patient population in any one geographic location has traditionally limited research into rare diseases. Methods and Results: Clinicians interested in the rare disease lymphangioleiomyomatosis (LAM) have worked with the LAM Treatment Alliance, the MIT Media Lab, and Clozure Associates to cooperate in the design of a state-of-the-art data coordination platform that can be used for clinical trials and other research focused on the global LAM patient population. This platform is a component of a set of web-based resources, including a patient self-report data portal, aimed at accelerating research in rare diseases in a rigorous fashion. Conclusions: Collaboration between clinicians, researchers, advocacy groups, and patients can create essential community resource infrastructure to accelerate rare disease research. The International LAM Registry is an example of such an effort.