Transcription of tufA and other chloroplast-encoded genes is controlled by a circadian clock in Chlamydomonas.

Levels of mRNA for the chloroplast-encoded elongation factor Tu (tufA) showed a dramatic daily oscillation in the green alga Chlamydomonas reinhardtii, peaking once each day in the early light period. The oscillation of tufA mRNA levels continued in cells shifted to continuous light or continuous dark for at least 2-3 days. Run-off transcription analyses showed that the rate of tufA transcription also peaked early in the light period and, moreover, that this transcriptional oscillation continued in cells shifted to continuous conditions. The half-life of tufA mRNA was estimated at different times and found to vary considerably during a light-dark cycle but not in cells shifted to continuous light. Light-dark patterns of transcription of several other chloroplast-encoded genes were examined and also found to persist in cells shifted to continuous light or dark. These results indicate that a circadian clock controls the transcription of tufA and other chloroplast-encoded genes.

A Test of the Biogenicity Criteria Established for Microfossils and Stromatolites on Quaternary Tufa and Speleothem Materials Formed in the “Twilight Zone” at Caerwys, UK

Natural Resources Wales and Steven Griffiths are thanked for access to Caerwys quarry and permission to work on the site. Sebastiaan Edelman and Thomas Logeman assisted with fieldwork and provided some of the field photographs. Bouke Lacet (Sedimentology laboratory, VU University Amsterdam) prepared the thin-sections. Three anonymous reviewers helped to sharpen the manuscript, and Sherry Cady provided valuable editorial advice and assistance. A.T.B. was inspired by Martin Brasier. He dedicates this manuscript to his father’s memory.

A Test of the Biogenicity Criteria Established for Microfossils and Stromatolites on Quaternary Tufa and Speleothem Materials Formed in the “Twilight Zone” at Caerwys, UK

Natural Resources Wales and Steven Griffiths are thanked for access to Caerwys quarry and permission to work on the site. Sebastiaan Edelman and Thomas Logeman assisted with fieldwork and provided some of the field photographs. Bouke Lacet (Sedimentology laboratory, VU University Amsterdam) prepared the thin-sections. Three anonymous reviewers helped to sharpen the manuscript, and Sherry Cady provided valuable editorial advice and assistance. A.T.B. was inspired by Martin Brasier. He dedicates this manuscript to his father’s memory.

A Test of the Biogenicity Criteria Established for Microfossils and Stromatolites on Quaternary Tufa and Speleothem Materials Formed in the “Twilight Zone” at Caerwys, UK

Natural Resources Wales and Steven Griffiths are thanked for access to Caerwys quarry and permission to work on the site. Sebastiaan Edelman and Thomas Logeman assisted with fieldwork and provided some of the field photographs. Bouke Lacet (Sedimentology laboratory, VU University Amsterdam) prepared the thin-sections. Three anonymous reviewers helped to sharpen the manuscript, and Sherry Cady provided valuable editorial advice and assistance. A.T.B. was inspired by Martin Brasier. He dedicates this manuscript to his father’s memory.

Central Algarve karst system tufa-related dynamics, Portugal.

Geomorphological mapping is a powerful instrument improving the geomorphological interpretation and understanding of the processes and forms used in landscape studies, with the ability of organizing different thematic layers in the same map. The presented map provide relevant information about the different geomorphological units of the central Algarve (i.e. the Carboniferous flysch mountains; the Barrocal, with marly and karstified subunits), where a karst system is prominent. Solution karst morphologies and large dry areas are common in the elevated areas of the Barrocal, suggesting deep circulation of groundwater. These recharge areas feed the perched aquifers of the area, where discharge is controlled by the impervious lithologies (clay-rich strata of the turbidites, marls and argilites) in the valley bottoms or other leaks in dammed aquifers. In springs related to the main aquifers tufa are actively being formed and, close coupled to spring location, different tufa depositional systems develop.

The influence of climate variability on hydrological processes and surface and groundwater hydrochemistry : the tropical upper roper river catchment, Northern Territory, Australia

The Upper Roper River is one of the Australia’s unique tropical rivers which have been largely untouched by development. The Upper Roper River catchment comprises the sub-catchments of the Waterhouse River and Roper Creek, the two tributaries of the Roper River. There is a complex geological setting with different aquifer types. In this seasonal system, close interaction between surface water and groundwater contributes to both streamflow and sustaining ecosystems. The interaction is highly variable between seasons. A conceptual hydrogeological model was developed to investigate the different hydrological processes and geochemical parameters, and determine the baseline characteristics of water resources of this pristine catchment. In the catchment, long term average rainfall is around 850 mm and is summer dominant which significantly influences the total hydrological system. The difference between seasons is pronounced, with high rainfall up to 600 mm/month in the wet season, and negligible rainfall in the dry season. Canopy interception significantly reduces the amount of effective rainfall because of the native vegetation cover in the pristine catchment. Evaporation exceeds rainfall the majority of the year. Due to elevated evaporation and high temperature in the tropics, at least 600 mm of annual rainfall is required to generate potential recharge. Analysis of 120 years of rainfall data trend helped define “wet” and “dry periods”: decreasing trend corresponds to dry periods, and increasing trend to wet periods. The period from 1900 to 1970 was considered as Dry period 1, when there were years with no effective rainfall, and if there was, the intensity of rainfall was around 300 mm. The period 1970 – 1985 was identified as the Wet period 2, when positive effective rainfall occurred in almost every year, and the intensity reached up to 700 mm. The period 1985 – 1995 was the Dry period 2, with similar characteristics as Dry period 1. Finally, the last decade was the Wet period 2, with effective rainfall intensity up to 800 mm. This variability in rainfall over decades increased/decreased recharge and discharge, improving/reducing surface water and groundwater quantity and quality in different wet and dry periods. The stream discharge follows the rainfall pattern. In the wet season, the aquifer is replenished, groundwater levels and groundwater discharge are high, and surface runoff is the dominant component of streamflow. Waterhouse River contributes two thirds and Roper Creek one third to Roper River flow. As the dry season progresses, surface runoff depletes, and groundwater becomes the main component of stream flow. Flow in Waterhouse River is negligible, the Roper Creek dries up, but the Roper River maintains its flow throughout the year. This is due to the groundwater and spring discharge from the highly permeable Tindall Limestone and tufa aquifers. Rainfall seasonality and lithology of both the catchment and aquifers are shown to influence water chemistry. In the wet season, dilution of water bodies by rainwater is the main process. In the dry season, when groundwater provides baseflow to the streams, their chemical composition reflects lithology of the aquifers, in particular the karstic areas. Water chemistry distinguishes four types of aquifer materials described as alluvium, sandstone, limestone and tufa. Surface water in the headwaters of the Waterhouse River, the Roper Creek and their tributaries are freshwater, and reflect the alluvium and sandstone aquifers. At and downstream of the confluence of the Roper River, river water chemistry indicates the influence of rainfall dilution in the wet season, and the signature of the Tindall Limestone and tufa aquifers in the dry. Rainbow Spring on the Waterhouse River and Bitter Spring on the Little Roper River (known as Roper Creek at the headwaters) discharge from the Tindall Limestone. Botanic Walk Spring and Fig Tree Spring discharge into the Roper River from tufa. The source of water was defined based on water chemical composition of the springs, surface and groundwater. The mechanisms controlling surface water chemistry were examined to define the dominance of precipitation, evaporation or rock weathering on the water chemical composition. Simple water balance models for the catchment have been developed. The important aspects to be considered in water resource planning of this total system are the naturally high salinity in the region, especially the downstream sections, and how unpredictable climate variation may impact on the natural seasonal variability of water volumes and surface-subsurface interaction.

重庆老龙洞二叠系-三叠系界线地层微生物岩研究

The largest mass extinction in the Phanerozoic happened at the end of the Permian. The microbialites formed in the extreme environments after the mass extinction has become a hotspot for geologists and paleontologists throughout the world. The dendroid microbialites that were described for the first time in 1999 from the Permian-Triassic boundary section at Laolongdong, Chongqing, have been studied by many geologists from China and overseas. Two important viewpoints about their origin have been proposed. Some researchers believed that they resemble Quaternary travertine shrubs in form, and may belong to microbialites. Some other researchers proposed that the dendroid structure is composed of clots formed by coccoidal cynaobacteria, and is microbialite. Our detailed survey on the section reveals that: (1) there is an interval of speckled “microbialite” in the section, and it underlies the dendroid “microbialite”, (2) the dendroid “microbialite” does not always have dendroid appearance; they are dendroid only in very local places; they are not dendroid in most places; for this reason, they are not comparable to recent tufa; (3) the volume of the dendroid structure greatly increases toward the top of the dendroid microbialite interval: accounting to 70% of the whole rock in the top part. This distribution pattern implies that the formation of this structure may be related to downward migration of the diagenetic fluid. Examination of thin sections reveals that the dendroid structure or point-like structure in the “microbialite” look as lighter areas in the thin sections and are composed of large blocky clear calcites containing scattered yellow dirty small calcite rhombi and irregular “points” of relict lime mudstone or wackestone or packstone. Their formation is by any one of the following two processes: (1) dissolution → filling of large blocky calcite; (2) dolomitization → dedolomitization → dissolution by meteoric fresh water → filling by large blocky calcites. It has been found that there are at least two sea-level falls during the P-T transition. As the sea level fall, the carbonate deposits came into supratidal environment, and suffered dolomitization caused by evaporative fluid or mixing water of sea water and meteoric water. Since the fluid migrated downward from the top of the deposits and in random pathway, the dolomitization formed dendroid or speckled dolomitic areas. As the deposits came into subaerial environments, the meteoric fresh water migrated along the dendroid or speckled dolomitic area with higher porosity, and dissolution happened, which caused the rock became spongy or alveolate. In later time, after the strata came into phreatic zone, large clear blocky calcites grew in and filled the pores in the spongy areas. The dendroid and speckled structure were formed in this way, rather than composed of clots formed by coccoid cyanobecteria. The microbial fossils in Laolongdong section include two types. The first is the tube-like cyanobecteria in middle Bed 3, which are generally less than 1 mm in length, taper toward one end, and are internally filled by microspars. They are straight or sinuous, with micritic wall 0.005~0.01 mm thick. Since this kind of microbial fossils are abundant in middle Bed 3, this rock belongs to microbialite. The second type occurs in Bed 5 and lower and middle Bed 6. They are irregular globular in shape, generally 0.2 ~ 0.5 mm in size, with several outward progresses, and internally filled by one layer of needle-like calcite cements on the wall and the large blocky calcite in the inner space. According to their shape and preservation way, it is inferred that this kind of fossils were formed from some kind of bacterial colony. The bacterial colony may be cuticle in composition, since it has some hardness as it is indicated by its resistance to deposit loading. These organisms discomposed during diagenetic time, and formed good porosity. In later diagenetic time, these pores were firstly cemented by needle-like calcites and later filled by large blocky calcites. So, the bacterial colony promoted the formation of dendroid and speckled structures. However, they did not always form such structures. On the other hand, even though no bacterial colony or other microbes or any kind of fossils were present, dendroid or speckled structures can form. Bed 4 of Laolongdong section contains abundant gastropods but no microbial fossils, and is not microbialite, even though it is speckled. The top of Bed 6 is dendroid, but contain no microbial fossils, and is not micrbialite.

Mapping stone surface temperature fluctuations: Implications for lichen distribution and biomodification on historic stone surfaces

The exposure of historic stone to processes of lichen-induced surface biomodification is determined, first and foremost, by the bioreceptivity of those surfaces to lichen colonization. As an important component of surface bioreceptivity, spatiotemporal variation in stone surface temperature plays a critical role in the spatial distribution of saxicolous lichen on historic stone structures, especially within seasonally hot environments. The ornate limestone and tufa stairwell of the Monastery of Cartuja (1516), Granada, Spain, exhibits significant aspect-related differences in lichen distribution. Lichen coverage and
diurnal fluctuations in stone surface temperature on the stairwell were monitored and mapped, under anticyclonic conditions in summer and winter, using an infrared thermometer and Geographical Information Systems approach. This research suggests that it is not extreme high surface temperatures that
determine the presence or absence of lichen coverage on stonework. Instead, average stone surface temperatures
over the course of the year seem to play a critical role in determining whether or not surfaces are receptive to lichen colonization and subsequent biomodification. It is inferred that lichen, capable of surviving extreme surface temperatures during the Mediterranean summer in an ametabolic state, require a respite period of lower temperatures within which they can metabolize, grow and reproduce.
The higher the average annual temperature a surface experiences, the shorter the respite period for any lichen potentially inhabiting that surface. A critical average temperature threshold of approximately 21 ?C has been identified on the stairwell, with average stone surface temperatures greater than this
generally inhibiting lichen colonization. A brief visual condition assessment between lichen-covered and lichen-free surfaces on the limestone sections of the stairwell suggests relative bioprotection induced by lichen coverage, with stonework quality and sharpness remaining more defined beneath lichen-covered surfaces. The methodology employed in this paper may have further applications in the monitoring and mapping of thermal stress fatigue on historic building materials.

Floodplain environmental change during the Younger Dryas and Holocene in Northwest Europe: Insights from the lower Kennet Valley, south central England

Many lowland rivers across northwest Europe exhibit broadly similar behavioural responses to glacial-interglacial transitions and landscape development. Difficulties exist in assessing these, largely because the evidence from many rivers remains limited and fragmentary. Here we address this issue in the context of the river Kennet, a tributary of the Thames, since c. 13,000 cal BP. Some similarities with other rivers are present, suggesting that regional climatic shifts are important controls. The Kennet differs from the regional pattern in a number of ways. The rate of response to sudden climatic change, particularly at the start of the Holocene and also mid-Holocene forest clearance, appears very high. This may reflect abrupt shifts between two catchment scale hydrological states arising from contemporary climates, land use change and geology. Stadial hydrology is dominated by nival regimes, with limited winter infiltration and high spring and summer runoff. Under an interglacial climate, infiltration is more significant. The probable absence of permafrost in the catchment means that a lag between the two states due to its gradual decay is unlikely. Palaeoecology, supported by radiocarbon dates, suggests that, at the very start of the Holocene, a dramatic episode of fine sediment deposition across most of the valley floor occurred, lasting 500-1000 years. A phase of peat accumulation followed as mineral sediment supply declined. A further shift led to tufa deposition, initially in small pools, then across the whole floodplain area, with the river flowing through channels cut in tufa and experiencing repeated avulsion. Major floods, leaving large gravel bars that still form positive relief features on the floodplain, followed mid-Holocene floodplain stability. Prehistoric deforestation is likely to be the cause of this flooding, inducing a major environmental shift with significantly increased surface runoff. Since the Bronze Age, predominantly fine sediments were deposited along the valley with apparently stable channels and vertical floodplain accretion associated with soil erosion and less catastrophic flooding. The Kennet demonstrates that, while a general pattern of river behaviour over time, within a region, may be identifiable, individual rivers are likely to diverge from this. Consequently, it is essential to understand catchment controls, particularly the relative significance of surface and subsurface hydrology. (c) 2005 Elsevier B.V. All rights reserved.

Combined use of satellite estimates and rain gauge observations to generate high-quality historical rainfall time series over Ethiopia

Climate data are used in a number of applications including climate risk management and adaptation to climate change. However, the availability of climate data, particularly throughout rural Africa, is very limited. Available weather stations are unevenly distributed and mainly located along main roads in cities and towns. This imposes severe limitations to the availability of climate information and services for the rural community where, arguably, these services are needed most. Weather station data also suffer from gaps in the time series. Satellite proxies, particularly satellite rainfall estimate, have been used as alternatives because of their availability even over remote parts of the world. However, satellite rainfall estimates also suffer from a number of critical shortcomings that include heterogeneous time series, short time period of observation, and poor accuracy particularly at higher temporal and spatial resolutions. An attempt is made here to alleviate these problems by combining station measurements with the complete spatial coverage of satellite rainfall estimates. Rain gauge observations are merged with a locally calibrated version of the TAMSAT satellite rainfall estimates to produce over 30-years (1983-todate) of rainfall estimates over Ethiopia at a spatial resolution of 10 km and a ten-daily time scale. This involves quality control of rain gauge data, generating locally calibrated version of the TAMSAT rainfall estimates, and combining these with rain gauge observations from national station network. The infrared-only satellite rainfall estimates produced using a relatively simple TAMSAT algorithm performed as good as or even better than other satellite rainfall products that use passive microwave inputs and more sophisticated algorithms. There is no substantial difference between the gridded-gauge and combined gauge-satellite products over the test area in Ethiopia having a dense station network; however, the combined product exhibits better quality over parts of the country where stations are sparsely distributed.

Avaliação do teor de cal livre em escória de aciaria elétrica

A escória de aciaria elétrica é um resíduo gerado no processo de fabricação de aço, que apresenta propriedades físicas adequadas quando aplicada em alguns materiais da área de construção civil. Entretanto, possui algumas limitações causadas pela presença de compostos que sofrem reações expansivas quando exposta ao ambiente (óxidos de cálcio e magnésio livres, óxidos de ferro e silicatos de cálcio), provocando rupturas e desintegração dos materiais onde é aplicada. Além disso, quando usada como base e sub-base na construção de estradas, pode ocorrer a formação de tufa (calcário precipitado) causando entupimento de drenos das rodovias. O presente trabalho tem como objetivo avaliar o teor de cal livre em escória de aciaria elétrica utilizando a combinação de um método titulométrico com análise térmica, pois é um dos compostos mais citados pela literatura como responsável pela expansão da escória. Dois métodos titulométricos foram selecionados para determinar o teor de cal livre, onde o primeiro foi desenvolvido para análise em cimento (Método do etilenoglicol) e o segundo foi adaptado para escória de aço (Método de Franke) Os resultados mostraram que o método de Franke, extraído da norma européia EN 1744:1998, foi o mais adequado para determinar cal livre em escórias de aciaria elétrica. A quantidade de cal livre encontrada não permitiu avaliar sua variação ao longo do tempo de exposição, somente considerando os métodos titulométricos. Entretanto, utilizando o método de análise térmica, observou-se um decréscimo no número de reações do primeiro mês de exposição com relação aos meses seguintes, sugerindo uma estabilização das escórias ao longo do tempo. Também, os resultados para cal original (em torno de 1%) sugerem uma potencialidade de formação de tufa. Finalmente, esse estudo mostrou que é fundamental a associação dos métodos titulométrico e de análise térmica para uma adequada avaliação de cal livre em escórias de aciaria elétrica.

Caracterização da geometria de depósitos sedimentares na borda sudoeste da Bacia`Potiguar

This study focuses on the potential of several techniques used to identify depositional geometries and paleogeographical investigation on the SW border of the Potiguar Basin. Three areas were selected for an integrated geological, geophysical and geochemistry study. The main used techniques were facies analysis, remote sensing,ground penetrating radar (GPR) and gamma-ray in outcrops, as well as petrographic microscope observations and the using of scanning eletronic microscopic (SEM), and Carbon and Oxygen Isotopic study in the carbonate tufa. These methodological approaches were very efficient in the facies analysis of 2D geometries. The GPR profiles carried out in Quixeré identified important geological reflectors which allowed to the identification of depositional geometries of tufa. However, GPR profiles were not able to identify geological reflectors in the Apodi and Olho d´Água da Bica outcrops. Gammaray profiles also presented good results, which justify their use in 1D and 2D geometric analysis. Carbon and Oxygen Isotopic analyses were also used to investigate paleoenvironmental setting of tufa deposits. It is important to remark the excellent resultsof GRP using in the identification of deposition al geometries of tufa and their contact relationships with the underlying rocks. Field analysis of faults indicate a vertical sigma-1 orientation which was associated to normal faults