Estimation of outcrossing rate in a breeding population of Eucalyptus urophylla with dominant RAPD and AFLP markers

Eucalyptus breeding is typically conducted by selection in open-pollinated progenies. As mating is controlled only on the female side of the cross, knowledge of outcrossing versus selling rates is essential for maintaining adequate levels of genetic variability for continuous gains. Outcrossing rate in an open-pollinated breeding population of Eucalyptus urophylla was estimated by two PCR-based dominant marker technologies, RAPD and AFLP, using 11 open-pollinated progeny arrays of 24 individuals. Estimated outcrossing rates indicate predominant outcrossing and suggest maintenance of adequate genetic variability within families. The multilcous outcrossing rate (t(m)) estimated from RAPD markers (0.93 +/- 0.027), although in the same range, was higher (alpha > 0.01) than the estimate based on AFLP (0.89 +/- 0.033). Both estimates were of similar magnitude to those estimated for natural populations using isozymes. The estimated Wright's fixation index was lower than expected based on t, possibly resulting from selection against selfed seedlings when sampling plants for the study. An empirical analysis suggests that 18 is the minimum number of dominant marker loci necessary to achieve robust estimates of t,. This study demonstrates the usefulness of dominant markers, both RAPD and AFLP, for estimating the outcrossing rate in breeding and natural populations of forest trees. We anticipate an increasing use of such PCR-based technologies in mating-system studies, in view of their high throughput and universality of the reagents, particularly for species where isozyme systems have not yet been optimized.

Internal genetic structure and outcrossing rate in a natural population of Araucaria angustifolia (Bert.) O. Kuntze

The internal genetic structure and outcrossing rate of a population of Araucaria angustifolia (Bert.) O. Kuntze were investigated using 16 allozyme loci. Estimates of the mean number of alleles per loci (1.6), percentage of polymorphic loci (43.8%), and expected genetic diversity (0.170) were similar to those obtained for other gymnosperms. The analysis of spatial autocorrelation demonstrated the presence of internal structure in the first distance classes (up to 70 m), suggesting the presence of family structure. The outcrossing rate was high (0.956), as expected for a dioecious species. However, it was different from unity, indicating outcrossings between related individuals and corroborating the presence of internal genetic structure. The results of this study have implications for the methodologies used in conservation collections and for the use or analysis of this forest species. © The American Genetic Association. 2006. All rights reserved.

Evolution of the mating system in colonizing plants.

Colonization is likely to be more successful for species with an ability to self-fertilize and thus to establish new populations as single individuals. As a result, self-compatibility should be common among colonizing species. This idea, labelled 'Baker's law', has been influential in discussions of sexual-system and mating-system evolution. However, its generality has been questioned, because models of the evolution of dispersal and the mating system predict an association between high dispersal rates and outcrossing rather than selfing, and because of many apparent counter examples to the law. The contrasting predictions made by models invoking Baker's law versus those for the evolution of the mating system and dispersal urges a reassessment of how we should view both these traits. Here, I review the literature on the evolution of mating and dispersal in colonizing species, with a focus on conceptual issues. I argue for the importance of distinguishing between the selfing or outcrossing rate and a simple ability to self-fertilize, as well as for the need for a more nuanced consideration of dispersal. Colonizing species will be characterized by different phases in their life pattern: dispersal to new habitat, implying an ecological sieve on dispersal traits; establishment and a phase of growth following colonization, implying a sieve on reproductive traits; and a phase of demographic stasis at high density, during which new trait associations can evolve through local adaptation. This dynamic means that the sorting of mating-system and dispersal traits should change over time, making simple predictions difficult.

Mating system of a population of Myracrodruon urundeuva F.F. & M.F. Allemão using the fAFLP molecular marker

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Sistema de reprodução em pequenas populações fragmentadas e em árvores isoladas de Hymenaea stigonocarpa

Six microsatellite loci were used to quantify the mating system of two small fragmented populations (Selviria - SEL and Aparecida do Tabuado APT, Mato Grosso do Sul State) and isolated trees in pastures, of the bat-pollinated tropical tree Hymenaea stignocarpa, growing in the Center-west region of Brazil. In SEL population, seeds were collected from 11 mother-trees; in APT, from three trees and, in the case of isolated trees, from six individuals growing at least 500 m apart in pastures. To investigate if there are differences on mating system between trees in populations and isolated trees, trees from populations were pooled as a group and, likewise, the isolated trees were pooled to another group. The outcrossing rate was higher in the populations ((t) over cap (m)=0.873) than in isolated trees ((t) over cap (m)=0.857), but the difference was not significant. Significant and high differences between multi-locus and single-locus outcrossing rate were detected in populations ((t) over cap (m)-(t) over cap (s)=0.301, P<0.05) and isolated trees (<(t)over cap>(m)-(t) over cap (s) = 0.276, P < 0.05), suggesting mating between relatives. Higher paternity correlation was observed in trees from population (<(r)over cap>(p)=0.636) than in isolated trees ((r) over cap (p)=0.377), indicating the occurrence of some correlated matings and that part of offspring are full-sibs. It was not observed increased in self-fertilization rate in isolated trees in pastures. In general terms, the unique observed difference in mating system between populations and isolate trees was the high rate of correlated matings in trees from populations, due probably to the small distance among coespecifics and the pollinator behavior, visiting near trees.

High levels of genetic differentiation and selfing in the Brazilian cerrado fruit tree Dipteryx alata Vog. (Fabaceae)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Taxas de cruzamento em uma população natural de Cryptocarya Moschata Nees (Lauraceae)

O sistema de cruzamento da espécie arbórea de dossel da Mata Atlântica brasileira, Cryptocarya moschata, foi estudado a partir de material proveniente do Parque Estadual Carlos Botelho, São Miguel Arcanjo, São Paulo, Brasil. As taxas de cruzamento foram determinadas através de marcadores alozímicos obtidos de plântulas germinadas de coortes de sementes coletadas de 35 árvores. O valor médio da taxa de cruzamento de equilíbrio (estimador indireto) foi t^eq = 0.51. As estimativas das taxas de cruzamento uniloco e multilocos (estimadores diretos) foram t^s = 0.725± 0,041 e t^m = 0,884 ± 0,034, respectivamente, indicando um sistema de cruzamento predominantemente alogâmico. As taxas de cruzamento de árvores individuais variaram de 27 a 100 ( x¯ = 87,8) porcento, a partir de t^m calculado com as freqüências gênicas de pólen mantidas constantes ao nível populacional. A partir do modelo de par de irmãos (modelo de cruzamento correlacionado) de Ritland, a correlação entre duas progênies irmãs oriundas de autofecundação (r^s) e a correlação entre duas progênies irmãs oriundas de paternidade por exocruzamento (r^p) foram 35,7% e 99,0%, respectivamente. Esses resultados corroboram o fato de haver variação nas taxas de autocruzamento entre as diferentes árvores, podendo também indicar que quando há endogamia, a maior parte das sementes nas árvores são provavelmente irmãs-germanas.

Mating system in Myracrodruon urundeuva (Anarcadiaceae): implications for conservation genetics

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Sistema de reprodução em pequenas populações fragmentadas e em árvores isoladas de Hymenaea stigonocarpa

Six microsatellite loci were used to quantify the mating system of two small fragmented populations (Selviria - SEL and Aparecida do Tabuado - APT, Mato Grosso do Sul State) and isolated trees in pastures, of the bat-pollinated tropical tree Hymenaea stignocarpa, growing in the Center-west region of Brazil. In SEL population, seeds were collected from 11 mother-trees; in APT, from three trees and, in the case of isolated trees, from six individuals growing at least 500 m apart in pastures. To investigate if there are differences on mating system between trees in populations and isolated trees, trees from populations were pooled as a group and, likewise, the isolated trees were pooled to another group. The outcrossing rate was higher in the populations (t̂ m= 0.873) than in isolated trees (t̂ m=0.857), but the difference was not significant. Significant and high differences between multi-locus and single-locus outcrossing rate were detected in populations (t̂ m- t̂ s=0.301, P<0.05) and isolated trees (t̂ m- t̂ s=0.276, P<0.05), suggesting mating between relatives. Higher paternity correlation was observed in trees from population (r̂ p=0.636) than in isolated trees (r̂ p=0.377), indicating the occurrence of some correlated matings and that part of offspring are full-sibs. It was not observed increased in self-fertilization rate in isolated trees in pastures. In general terms, the unique observed difference in mating system between populations and isolate trees was the high rate of correlated matings in trees from populations, due probably to the small distance among coespecifics and the pollinator behavior, visiting near trees.

Sistema de reprodução, parentesco e tamanho efetivo em sementes de polinização livre de populações fragmentadas de Copaifera langsdorffii Desf. por análise de locos microssatélites

Anthropogenic changes in the reproductive population density can affect the mating system and result in an increase in selfing and correlated matings. This study investigated the mating system in small fragmented populations of the insect pollinated tropical tree species Copaifera langsdorffii, using microsatellite loci and the mixed and correlated mating models. Open-pollinated seeds were collected from 15 seed-trees located in a small forest fragment (4.8 ha), denominated Bosque and from 14 other seed-trees located in other small forest fragments of the north-western region of São Paulo State. No significant differences were observed between the seed-trees from Bosque (tm=0.933±0.028) and other fragments (tm=0.971±0.032), although these estimates were significantly different from 1.0, suggesting that selfing was occurring. Differences between multilocus and unilocus outcrossing rate were significantly high in both seed-trees of Bosque (tm -ts=0.478±0.05) and other forest fragments (tm -ts=0.475±0.018), suggesting a spatial genetic structure in those stands. The results also showed high rates of correlated mating in the samples, indicating that a good part of the offspring were full-sibs. As a consequence of selfing, mating among relatives and correlated matings, the coancestry within families was equally high in the seed-trees of Bosque ((Θ=0.237) and in the seed-trees of the other forest fragments (Θ=0.241) and the effective population size was lower than expected in panmitic populations (Ne<4). The results were discussed, focusing on the sample size of seed-trees to collect seeds for genetic conservation and enviromental reforestation.

Efeitos do corte seletivo de árvores sobre o sistema de reprodução e dispersão de pólen em uma população de Hymenaea courbaril na Amazônia brasileira

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Diversidade genética em populações de Myracrodruon urundeuva Fr. All., sob diferentes tipos de perturbação antrópica

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Assessing the genetic structure of Oryza glumaepatula populations with isozyme markers

To assess the genetic diversity and genetic structure parameters, nine populations of Oryza glumaepatula from the Amazon biome, four from the Pantanal biome, and one collected at Rio Xingu, Mato Grosso, totaling 14 populations and 333 individuals were studied with isozyme markers. Six loci were evaluated showing a moderate allozyme variability (A = 1.21, P = 20.7%, H_o = 0.005, H_e = 0.060). The populations from the Pantanal biome showed higher diversity levels than the Amazon biome. High genetic differentiation among the populations, expected for self-fertilizing species, was observed (F_ST=0.763), with lower differentiation found among the Pantanal populations (F_ST=0.501). The average apparent outcrossing rate was higher for the Pantanal populations (t _a = 0.092) than for the Amazonian populations (t _a = 0.003), while the average for the 14 populations was 0.047, in accordance with a self-fertilization mating system.

Diversidade genética, sistema de reprodução e fluxo de pólen e sementes em uma população fragmentada de Myracrodruon urundeuva (F.F. & M.F. Allemão) para fins de conservação genética

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Sistema de reprodução em populações naturais de Peltophorum dubium

A Multi-locus mixed mating model and correlated mating model were used to analyze the mating system of four natural populations of Peltophorum dubium (Sprengel) Taubert from Western Sao Paulo State, Brazil. Open pollinated seeds were collected from 19 to 33 seed-trees per population and evaluated by allozyme electrophoresis analysis. Significant differences between pollen and ovule gene frequencies were detected in more than 50% of loci in each population, indicating deviations from random mating, probably due to correlated mating, self-fertilizations and mating among relatives. The comparison the fixation index estimated from seed trees ((F) over cap (m), ranged from 0.009 to 0.285) with their progenies ((F) over cap (p), ranged from 0.127 to 0.364) suggested selection against inbreeding between offspring of adult stages. The estimates of multi-locus outcrossing rate (t(m)) ranged from 0.557 to 0.924, indicating that the species has a mixed-mating system. Differences between multi-locus and single-locus outcrossing rate (t(m)-t(s))was positive and significantly different from zero for all populations, with values ranging from 0.092 to 0.111, suggesting mating among relatives within the populations, probably due to the presence of intra-population spatial genetic structure. The mean coefficient of co-ancestry (Theta) within progenies ranged from 0.147 to 0.251; confirming that the progenies are compounded by mixtures of different kinds of relatedness. The results are discussed from the view of genetic improvement and conservation of the species.