Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway

Nitrous oxide (N2O) emission from soils is a major contributor to the atmospheric loading of this potent greenhouse gas. It is thought that autotrophic ammonia oxidizing bacteria (AOB) are a significant source of soil-derived N2O and a denitrification pathway (i.e. reduction of NO2- to NO and N2O), so-called nitrifier denitrification, has been demonstrated as a N2O production mechanism in Nitrosomonas europaea. It is thought that Nitrosospira spp. are the dominant AOB in soil, but little information is available on their ability to produce N2O or on the existence of a nitrifier denitrification pathway in this lineage. This study aims to characterize N2O production and nitrifier denitrification in seven strains of AOB representative of clusters 0, 2 and 3 in the cultured Nitrosospira lineage. Nitrosomonas europaea ATCC 19718 and ATCC 25978 were analysed for comparison. The aerobically incubated test strains produced significant (P < 0.001) amounts of N2O and total N2O production rates ranged from 2.0 amol cell(-1) h(-1), in Nitrosospira tenuis strain NV12, to 58.0 amol cell(-1) h(-1), in N. europaea ATCC 19718. Nitrosomonas europaea ATCC 19718 was atypical in that it produced four times more N2O than the next highest producing strain. All AOB tested were able to carry out nitrifier denitrification under aerobic conditions, as determined by production of N-15-N2O from applied N-15-NO2-. Up to 13.5% of the N2O produced was derived from the exogenously applied N-15-NO2-. The results suggest that nitrifier denitrification could be a universal trait in the betaproteobacterial AOB and its potential ecological significance is discussed.

DINAMICA MICROBIANA Y CALIDAD DE LA MATERIA ORGANICA DEL SUELO COMO INDICADORES DE SUSTENTABILIDAD EN EL CHACO ARIDO DE LA PROVINCIA DE CORDOBA Microbial dynamic and organic matter quality as indicators of soil sustainability in Dry Chaco of Córdoba Province

Se propone analizar el efecto del uso productivo en el Chaco Árido de la provincia de Córdoba, mediante la aplicación de indicadores de sustentabilidad relacionados con la calidad de la materia orgánica y la liberación de nutrientes en el suelo, con la finalidad de aportar a un tema de suma interes para la provincia de Córdoba como es la formulación de criterios y pautas de manejo para la implementación de la Ley de Bosques (N° 26331). Se trabajará en la localidad de San Miguel en el departamento Pocho, en un sitio de bosque no disturbado y en tres sistemas productivos: desmonte selectivo con implantación de pasturas; desmonte total con agricultura bajo riego y desmonte total sobrepastoreado. En cada sitio se medirá “in situ” la emisión de CO2 y se tomaran muestras de suelo a las que se les determinará: a) contenido de materia orgánica total (MO), b) contenido de sustancias húmicas (SH), diferenciando ácidos húmicos (AH) y fúlvicos (AF), c) abundancia y actividad de microorganismos nitrificadores y d) propiedades químicas de los AH y AF. Se calcularán los siguientes índices de sustentabilidad a) materia orgánica biodisponible (MOB=MO–SH); b) índice de humificación (IH=SH/MO); c) tipo de humus (TH=AF/AH; d) índice de mineralización de C (IMC=CO2/MO); e) índice de nitrificación (IN=actividad/abundancia); y f) índice de estabilidad de las fracciones humificadas: compuestos aromáticos/ alifáticos. Los datos serán analizados estadísticamente mediante ANOVA y comparación de medias por LSD (P<0.05) y tests multivariados. We proposed analyze the effect of land use in Arid Chaco of Cordoba province, using sustainability indicators related to organic matter quality and nutrient release in soil, with the aim to formulate management criteria for the implementation of the Ley de Bosques (N° 26331) in Córdoba province. The study will be conducted in San Miguel village in Pocho department, in one undisturbed forest site and three productive systems: selective clearing with grass sowing; total clearing with irrigation agriculture and total clearing with overgrazed. In each site "in situ" CO2 emission will be measured and soil samples will be taken, in which the following parameters will be determined: a) total organic matter content (MO), b) humic substances content (SH), in humic acids (AH) and fulvic acids (AF), c) abundance and activity of nitrifier microorganisms and d) chemical properties of AH and AF. The sustainability indexes will be calculated: biodisponible organic matter (MOB=MO–SH); b) humification index (IH=SH/MO); c) humus type (TH=AF/AH; d) C mineralization index (IMC=CO2/MO); e) nitrifying index (IN=activity/abundance); and f) humic fractions stability index: aromatic/aliphatic compounds. The data will be statistically analyzed by ANOVA and the means will be compared by LSD (P<0.05) and multivariate tests.

Nitrificação e aproveitamento de alguns adubos nitrogenados

The rate of nitrification of several nitrogenous fertilizers (ammonium sulfate, nitre-chalk, ureia, and cottonseed meal) was studied in three soils, namely, "terra roxa legítima", a red soil derived from basalt, "terra roxa misturada", a soil also derived from basalt but with a higher proportion of sand, and "areito Corumbataí", a sandy soil. The effects of the following treatments on nitrification were considered: addition of limestone of micronutrients (Fe, Cu, Zn, Mn, and Mo), and inoculation with a suspension of spores of Aspergillus wentii, a heterotrophic nitrifier. The results showed that: in "terra roxa legítima" limestone had no influence on the nitrification rate, whereas the micronutrients estimulated the oxidation of nitre-chalk, cottonseed meal and urea; inoculation with A. wentii helped only the nitrification of ammonium sulfate and of the cottonseed meal; the latter, in all the treatments employed gave use to a smaller amount of nitrates; in "terra roxa misturada", all the fertilizers depending upon the treatments they were subjected to, presented maximum values for nitrification; limestone estimulated the oxidation of ammonium sulfate as well as the mineralization of the cottonseed meal; the addition of micronutrients helped the nitrification of all the fertilizers, except that of urea; inoculation showed a benefical influence on the nitrification of ammonium sulfate and cottonseed meal; in "arenito de Corumbatai", the amounts of nitrates produced was roughly the same for all the fertilizers investigated; limestone estimulated the nitrification of nitro-chalk, ammonium sulfate and cottonseed meal whilst the addition of micronutrients benefited only the latter two; the inoculation with A. wentii helped the oxidation of all the fertilizers. In order to study the availability of the various fertilizers above discussed, two plant growing experiments were carried cut, one in pots, using the three soil types and another one in the field, with "terra roxa misturada". In "arenito de Corumbatai" there was no significant difference in the yield both of straw and rice grains for none of the fertilizers: Chilean nitrate of soda was used as a control; ho marked agreement could be detected between the data concerning nitrification and the yield results. In "terra roxa legítima", ammonium sulfate won the competition and there was a good parallelism between nitrification and yield. In "terra roxa misturada", there was no statistical difference among the various fertilizers; the agreement between nitrification and yields was reasonable. In the field (corn), Chilean nitrate, ammonium sulfate and nitro-chalk were clearly beter than urea and cottonseed meal which did not differ from the minus nitrogen plots.

Farming Nitrifiers: Main factors and parameters for maintaining healthy cultures

[EN] The atmospheric CO2 level is rising. Its greenhouse effect is partially mitigated by terrestrial (plants) and marine photosynthetic organisms (algae, phytoplankton), and also by the less-known chemosynthetic bacteria. Within this group of bacteria, nitrifiers have a direct and indirect impact on carbon fixation because, on one hand, they are autotrophs and, on the other, they release inorganic nitrogenous nutrients that feed other photoautotrophs. A new assay which simplifies the measurement of nitrification would improve our knowledge about the ocean’s capacity to fix CO2. Knowing how to cultivate these microbes from marine water samples is a first step towards developing new nitrification detection techniques. During the last six months, we have isolated and cultured a natural assembledge of marine nitrifiers. Our larger objective is to develop a way to enzymatically detect nitrification. However, to do this, we need large quantities of nitrifiers. Consequently, at this point, culturing this marine nitrifier community is our priority. We have learned that pH, nutrient levels, air flow, temperature, low light and sterility are critical for growing healthy nitrifiers. With this knowledge we will now be able to conduct experiments with the nitrifiers and develop the methodology that we seek.

Factors Influencing Spatial Variability in Nitrogen Processing in Nitrogen-Saturated Soils

Nitrogen (N) saturation is an environmental concern for forests in the eastern U.S. Although several watersheds of the Fernow Experimental Forest (FEF), West Virginia exhibit symptoms of Nsaturation, many watersheds display a high degree of spatial variability in soil N processing. This study examined the effects of temperature on net N mineralization and nitrification in N-saturatedsoils from FEF, and how these effects varied between high N-processing vs. low N-processingsoils collected from two watersheds, WS3 (fertilized with [NH4]2SO4) and WS4 (untreated control). Samples of forest floor material (O2 horizon) and mineral soil (to a 5-cm depth) were taken from three subplots within each of four plots that represented the extremes of highest and lowest ratesof net N mineralization and nitrification (hereafter, high N and low N, respectively) of untreated WS4 and N-treated WS3: control/low N, control/high N, N-treated/low N, N-treated/high N. Forest floor material was analyzed for carbon (C), lignin,and N. Subsamples of mineral soil were extractedimmediately with 1 N KCl and analyzed for NH4+and NO3– to determine preincubation levels. Extracts were also analyzed for Mg, Ca, Al, and pH. To test the hypothesis that the lack of net nitrification observed in field incubations on the untreated/low N plot was the result of absence ofnitrifier populations, we characterized the bacterial community involved in N cycling by amplification of amoA genes. Remaining soil was incubated for 28 d at three temperatures (10, 20, and30°C), followed by 1 N KCl extraction and analysis for NH4+ and NO3–. Net nitrification was essentially 100% of net N mineralization for all samples combined. Nitrification rates from lab incubation sat all temperatures supported earlier observations based on field incubations. At 30°C, rates from N- t reated/high N were three times those of N-treated/low N. Highest rates were found for untreated/high N (two times greater than those of N-treated/high N), whereas untreated/low N exhibited no net nitrification. However, soils exhibitingno net nitrification tested positive for presence of nitrifying bacteria, causing us to reject our initial hypothesis. We hypothesize that nitrifier populations in such soil are being inhibited by a combination of low Ca:Al ratios in mineral soil and allelopathic interactions with mycorrhizae of ericaceous species in the herbaceous layer.