In situ chemical modification of peptide microarrays. Application to the study of the antibody responses to methylated antigens

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In situ chemical modification of peptide microarrays: application to the study of the antibody responses to methylated antigens.

Peptide microarrays are useful tools for characterizing the humoral response against methylated antigens. They are usually prepared by printing unmodified and methylated peptides on substrates such as functionalized microscope glass slides. The preferential capture of antibodies by methylated peptides suggests the specific recognition of methylated epitopes. However, unmodified peptide epitopes can be masked due to their interaction with the substrate. The accessibility of unmodified peptides and thus the specificity of the recognition of methylated peptide epitopes can be probed using the in situ methylation procedure described here. Alternately, the in situ methylation of peptide microarrays allows probing the presence of antibodies directed toward methylated epitopes starting from easy-to-make and cost-effective unmodified peptide libraries. In situ methylation was performed using formaldehyde in the presence of sodium cyanoborohydride and nickel chloride. This chemical procedure converts lysine residues into mono- or dimethyl lysines.

Avaliação da interação entre o persulfato de potássio com solos brasileiros para a utilização da tecnologia de remediação por oxidação química in situ.

Recentemente, o uso de persulfato em processo de oxidação química in situ em áreas contaminadas por compostos orgânicos ganhou notoriedade. Contudo, a matriz sólida do solo pode interagir com o persulfato, favorecendo a formação de radicais livres, evitando o acesso do oxidante até o contaminante devido a oxidação de compostos reduzidos presentes no solo ou ainda pela alteração das propriedades hidráulicas do solo. Essa pesquisa teve como objetivos avaliar se as interações entre a solução de persulfato com três solos brasileiros poderiam eventualmente interferir sua capacidade de oxidação bem como se a interação entre eles poderia alterar as propriedades hidráulicas do solo. Para isso, foram realizados ensaios de oxidação do Latossolo Vermelho (LV), Latossolo Vermelho Amarelo (LVA) e Neossolo Quartzarênico (NQ) com solução de persulfato (1g/L e 14g/L) por meio de ensaios de batelada, bem como a oxidação do LV por solução de persulfato (9g/L e 14g/L) em colunas indeformadas. Os resultados mostraram que o decaimento do persulfato seguiu modelo de primeira ordem e o consumo do oxidante não foi finito. A maior constante da taxa de reação (kobs) foi observada para o reator com LV. Essa maior interação foi decorrente da diferença na composição mineralógica e área específica. A caulinita, a gibbsita e os óxidos de ferro apresentaram maior interação com o persulfato. A redução do pH da solução dos reatores causou a lixiviação do alumínio e do ferro devido a dissolução dos minerais. O ferro mobilizado pode ter participado como catalisador da reação, favorecendo a formação de radicais livres, mas foi o principal responsável pelo consumo do oxidante. Parte do ferro oxidado pode ter sido precipitado como óxido cristalino favorecendo a obstrução dos poros. Devido à maior relação entre massa de persulfato e massa de solo, a constante kobs obtida no ensaio com coluna foi 23 vezes maior do que a obtida no ensaio de batelada, mesmo utilizando concentração 1,5 vezes menor no ensaio com coluna. Houve redução na condutividade hidráulica do solo e o fluxo da água mostrou-se heterogêneo após a oxidação devido a mudanças na estrutura dos minerais. Para a remediação de áreas com predomínio de solos tropicais, especialmente do LV, pode ocorrer a formação de radicais livres, mas pode haver um consumo acentuado e não finito do oxidante. Verifica-se que o pH da solução não deve ser inferior a 5 afim de evitar a mobilização de metais para a água subterrânea e eventual obstrução dos poros por meio da desagregação dos grãos de argila.

Kinetics of the oxidation of MCRR by potassium permanganate

The occurrence of the microcystins in the water bodies, especially in drinking water resources, has received considerable attentions. In situ chemical oxidation is a promising cost-effective treatment method to remove MC from water body. This research investigated the reaction kinetics of the oxidation of MCRR by permanganate. Experimental results indicate that the reaction is second order overall and first order with respect to both permanganate and MCRR, and has an activation energy of 18.9 kJ/mol. The second-order rate constant ranges from 0.154 to 0.225 l/mg/min at temperature from 15 to 30 degrees C. The MCRR degradation rates can be accelerated through increasing reaction temperature and oxidant concentration. The reaction under acid conditions was slightly faster than under alkaline conditions. The half-life of the reaction was less than 1 min, and more than 99.5% of MCRR was degraded within 10 min. (c) 2005 Elsevier Ltd. All rights reserved.

In situ PEI and formic acid directed formation of Pt NPs/MWNTs hybrid material with excellent electrocatalytic activity

A hybrid material based on Pt nanoparticles (Pt NPs) and multi-walled carbon nanotubes (MWNTs) was fabricated with the assistance of PEI and formic acid. The cationic polyelectrolyte PEI not only favored the homogenous dispersion of carbon nanotubes (CNTs) in water, but also provided sites for the adsorption of anionic ions PtCl42- on the MWNTs' sidewalls. Deposition of Pt NPs on the MWNTs' sidewalls was realized by in situ chemical reduction of anionic ions PtCl42- with formic acid. The hybrid material was characterized with TEM, XRD and XPS. Its excellent electrocatalytic activity towards both oxygen reduction in acid media and dopamine redox was also discussed.

Kinetics of the oxidation of methyl tert-butyl ether (MTBE) by potassium permanganate

The occurrence of the fuel oxygenate methyl tert-butyl ether (MTBE) in the environment has received considerable scientific attention. The pollutant is frequently found in the groundwater due to leaking of underground storage tanks or pipelines. Concentrations of more than several mg/L MTBE were detected in groundwater at several places in the US and Germany in the last few years. In situ chemical oxidation is a promising treatment method for MTBE-contaminated plumes. This research investigated the reaction kinetics for the oxidation of MTBE by permanganate. Batch tests demonstrated that the oxidation of MTBE by permanganate is second order overall and first order individually with respect to permanganate and MTBE. The second-order rate constant was 1.426 x 10(-6) L/mg/h. The influence of pH on the reaction rate was demonstrated to have no significant effect. However, the rate of MTBE oxidation by potassium permanganate is 2-3 orders of magnitude lower than of other advanced oxidation processes. The slower rates of MTBE oxidation by permanganate limit the applicability of this process for rapid MTBE cleanup strategies. However, permanganate oxidation of MTBE has potential for passive oxidation risk management strategies. (C) 2002 Elsevier Science Ltd. All rights reserved.

A study on the thermodynamics of in situ MgAl2O4/Al MMC formation using amorphous silica sources

MgAl₂O₄ (spinel) is considered as a commercially important ceramic reinforcement in MMC fabrication because of the possible tailorable properties imparted with Al for many applications. Generally, any oxygen source, i.e., the dissolved oxygen, or pure oxygen atmosphere or atmospheric oxygen is sufficient for the formation of MgAl₂O₄ in Al–Mg alloy. Among all the reactive oxygen sources, the reactivity of SiO₂ with Al alloy is found to be higher. Amorphous silica is highly reactive in nature compared to crystalline silica. The present study has examined the thermodynamics of MgAl₂O₄ formation in Al–Mg alloy by amorphous silica sources with the aid of differential thermal analyzer (DTA) and the simulated experiments. The dissolution of Si and the formation of MgAl₂O₄ are detected as the endothermic peak and the immediate exothermic peak respectively in DTA curves and the presence of MgAl₂O₄ is confirmed by the XRD of the simulated sample. The MgO formed due to the oxidation of Mg in Al–Mg alloy has been found to influence the MgAl₂O₄ formation.

Long-Term In Situ Survey of Reactive Iron Concentrations at the EMSO-Azores Observatory

A study of the temporal dynamics of iron concentrations and temperature on a faunal assemblage at the Lucky Strike vent was performed using the Tempo ecological module at the EMSO-Azores deep-sea observatory. The CHEMINI in situ analyzer was implemented on this structure to determine reactive iron concentrations in unfiltered seawater samples along with a temperature probe. Stability tests were performed on the CHEMINI analyzer before deployment (optical module, hyperbaric tests, and deep-sea calibration) for long-term in situ analysis of reactive iron (six months, 2013–2014) at the Tour Eiffel active edifice. Recorded daily, the in situ standard (25 \mu mol.L {}^{-1} ) showed excellent reproducibility (1.07%, n=522 ), confirming satisfactory analytical performance of the CHEMINI analyzer and thus validating the iron concentrations measured by the instrument. Furthermore, the analyzer proved to be reliable and robust over time. The averaged reactive iron concentration for the six-month period remained low ([Fe] =text{7.12}\pm text{2.11} \mu mol.L {}^{-1} , n=519 ), but showed some noticeable variations with temperature. Reactive iron concentrations and temperature were significantly correlated emphasizing reactive iron stabilization over the time of deployment. Period spectra indicated strong tidal influence and relevant frequencies of four to five days for both variables.

Estudo da formação de sub-produtos da degradação de clorobenzeno e 1,2-dicloroetano a partir da reação com reagente de Fenton em solução aquosa utilizando diferentes fontes de ferro

Poluições da água e do solo são duas das cinco categorias básicas de poluição ambiental. As outras três são do ar, ruído e luz. Poluição ocorre quando um material/produto químico é adicionado ao meio ambiente afetando-o adversamente. Uma vez que a poluição existe, retornar a matriz impactada para o seu estado anteriormente não poluído torna-se muito difícil ou até mesmo impossível em alguns casos. Os compostos organoclorados (OC) representam um importante grupo de poluentes orgânicos persistentes (POP), devido à sua toxicidade e elevada persistência no ambiente. Diferentes técnicas de remediação de solo e água subterrânea têm sido desenvolvidas com o objetivo de reparar as áreas contaminadas em menor tempo e custo possíveis e, assim, a oxidação química in situ tem se mostrado uma técnica cada vez mais atraente devido sua simplicidade e baixo custo. A degradação de dois compostos organoclorados via oxidação química por reagente de Fenton em solução aquosa é o objeto do presente trabalho. Para tanto, foram selecionados dois compostos, sendo um alifático e outro aromático. Assim, foram avaliadas as condições de degradação dos compostos organoclorados em relação às concentrações do oxidante em diferentes tempos reacionais, diferentes fontes de catalisador e, de forma qualitativa, quais foram os principais subprodutos formados. Os ensaios oxidativos foram realizados em meio aquoso com temperatura controlada a 25 C e em 3 configurações de [Fe2+] e [H2O2]. A extração dos compostos de interesse para a fase orgânica também foi estudada. A análise dos extratos revelou que o acetato de etila foi o solvente que melhor extraiu os compostos de interesse da fase aquosa. Além destes ensaios, foram avaliadas outras duas fontes de Fe(II), sendo 11 óxidos de manganês dopados com ferro e a classe de solo predominante no território nacional, que é caracterizada pela sua alta concentração de ferro endógeno (latossolo). O ensaio entre as fontes de ferro revelou que tanto o óxido de Mn quanto o latossolo produziram menos subprodutos em relação à reação com a solução de sulfato Fe(II). Entretanto, em termos quantitativos, a redução na concentração de clorobenzeno foi mais efetiva na reação com a solução de Fe(II) (cerca de 63%). A identificação dos sobprodutos foi realizada a partir da análise em cromatógrafo a gás acoplado a espectrômetro de massas e em análise comparativa dos espectros com a biblioteca NIST. Os ensaios oxidativos revelaram que em baixas concentrações de oxidante, há a possibilidade de geração de subprodutos mais tóxicos que os reagentes, sendo produzido bifenilas policloradas e hexaclorociclohexano nas reações com clorobenzeno e 1,2-dicloroetano, respectivamente

Environmental implications of soil remediation using the Fenton process

This work evaluates some collateral effects caused by the application of the Fenton process to 1,1-bis(4-chlorophenyl)-2,2,2-trichloroethane (DDT) and diesel degradation in soil. While about 80% of the diesel and 75% of the DDT present in the soil were degraded in a slurry system, the dissolved organic carbon (DOC) in the slurry filtrate increased from 80 to 880 mg l(-1) after 64 h of reaction and the DDT concentration increased from 12 to 50 mu g l(-1). Experiments of diesel degradation conducted on silica evidenced that soluble compounds were also formed during diesel oxidation. Furthermore, significant increase in metal concentrations was also observed in the slurry filtrate after the Fenton treatment when compared to the control experiment leading to excessive concentrations of Cr, Ni, Cu and Mn according to the limits imposed for water. Moreover, 80% of the organic matter naturally present in the soil was degraded and a drastic volatilization of DDT and 2,2-bis(4-chlorophenyl)-1,1-dichloroethylene was observed. Despite the high percentages of diesel and DDT degradation in soil, the potential overall benefits of its application must be evaluated beforehand taking into account the metal and target compounds dissolution and the volatilization of contaminants when the process is applied. (c) 2007 Elsevier Ltd. All rights reserved.

In situ Raman studies of the selective oxidation of methanol to formaldehyde and ethene to ethylene oxide on a polycrystalline silver catalyst

The combined techniques of in situ Raman microscopy and scanning electron microscopy (SEM) have been used to study the selective oxidation of methanol to formaldehyde and the ethene epoxidation reaction over polycrystalline silver catalysts. The nature of the oxygen species formed on silver was found to depend critically upon the exact morphology of the catalyst studied. Bands at 640, 780 and 960 cm-1 were identified only on silver catalysts containing a significant proportion of defects. These peaks were assigned to subsurface oxygen species situated in the vicinity of surface dislocations, AgIII=O sites formed on silver atoms modified by the presence of subsurface oxygen and O2 - species stabilized on subsurface oxygen-modified silver sites, respectively. The selective oxidation of methanol to formaldehyde was determined to occur at defect sites, where reaction of methanol with subsurface oxygen initially produced subsurface OH species (451 cm-1) and adsorbed methoxy species. Two distinct forms of adsorbed ethene were identified on oxidised silver sites. One of these was created on silver sites modified by the interaction of subsurface oxygen species, and the other on silver crystal planes containing a surface coverage of atomic oxygen species. The selective oxidation of ethene to ethylene oxide was achieved by the reaction between ethene adsorbed on modified silver sites and electrophilic AgIII=O species, whereas the combustion reaction was perceived to take place by the reaction of adsorbed ethene with nucleophilic surface atomic oxygen species. Defects were determined to play a critical role in the epoxidation reaction, as these sites allowed the rapid diffusion of oxygen into subsurface positions, and consequently facilitated the formation of the catalytically active AgIII=O sites.

Bisphenol A degradation enhanced by air bubbles via advanced oxidation using in situ generated ferrous ions from nano zero-valent iron/palygorskite composite materials

Novel nano zero-valent iron/palygorskite composite materials prepared by evaporative and centrifuge methods are tested for the degradation of bisphenol A in an aqueous medium. A systematic study is presented which showed that nano zero-valent iron material has little effect on bisphenol A degradation. When hydrogen peroxide was added to initiate the reaction, some percentage of bisphenol A removal (∼20%) was achieved; however, with the aid of air bubbles, the percentage removal can be significantly increased to ∼99%. Compared with pristine nano zero-valent iron and commercial iron powder, nano zero-valent iron/palygorskite composite materials have much higher reactivity towards bisphenol A and these materials are superior as they have little impact on the solution pH. However, for pristine nano zero-valent iron, it is difficult to maintain the reaction system at a favourable low pH which is a key factor in maintaining high bisphenol A removal. All materials were characterized by X-ray diffraction, scanning electron microscopy, elemental analysis, transmission electron microscopy and X-ray photoelectron spectroscopy. The optimum conditions were obtained based on a series of batch experiments. This study has extended the application of nano zero-valent iron/palygorskite composites as effective materials for the removal of phenolic compounds from the environment.

Rapid reduction of GO by hydrogen spill-over mechanism by in situ generated nanoparticles at room temperature and their catalytic performance towards 4-nitrophenol reduction and ethanol oxidation

Here, we report the clean and facile synthesis of Pt and Pd nanoparticles decorated on reduced graphene oxide (rGO) by the simultaneous reduction of graphene oxide (GO) and the metal ions in Mg/acid medium. As-generated Pt and Pd nanoparticles serve as a heterogeneous catalyst for the further reduction of the rGO by the hydrogen spill-over process. The C/O ratio is much higher as compared to the rGO obtained by the reduction of GO by only Mg/acid. Overall, the process is rapid, facile and green that does not require any toxic chemical agent or any rigorous chemical reactions. We perform the catalytic reduction of 4-nitophenol (4-NP) to 4-aminophenol (4-AP) at room temperature by Pd@rGO and Pt@rGO. The reduction is complete within 35 s for Pd@rGO and 60 s for Pt@rGO when 50 mu g of hybrid catalyst is used for 0.5 ml of 1 mM of 4-NP. In case of ethanol oxidation, the current density for Pd@rGO is comparable to commercial Pt/C but is doubled for Pt@rGO. Overall, both structures show highly stable catalytic activity compared to commercial Pt/C. (C) 2014 Elsevier B.V. All rights reserved.

In situ microscopic FTIR spectroelectrochemistry study of oxidation of L-ascorbic acid in polymer electrolyte (PEG/LiClO4)

In situ microscopic FTIR spectroelectrochemistry behavior of L-ascorbic acid (H(2)A) in polymer electrolyte is reported for the first time. H(2)A undergoes a two-step oxidation, The oxidation waves shift towards more anodic potential values when the scan rate increases. The peak currents of the oxidation waves are proportional to the square roots of scan rate up to 100 mV/s, The in situ infrared spectra suggest that the product of the oxidation be dehydroascorbic acid, which may exist as a dimer.

The effects of the specific adsorption of anion on the reactivity of the Ru(0001) surface towards CO adsorption and oxidation: in situ FTIRS studies

The dynamics of adsorption and oxidation of CO on Ru(0001) electrode in sulfuric acid solution have been studied using in situ FTIR spectroscopy under potential control and at open circuit, the latter at 20 and 55 degrees C. The in situ IR data show clearly that the bisulfate anion adsorbs on the Ru(0001) surface over the potential range from -200 mV to 350 mV (vs. Ag/AgCl) at 20 degrees C in the absence and presence of adsorbed CO; however, increasing the temperature to 55 degrees C and/ or increasing the concentration of dissolved O-2 reduces the bisulfate adsorption. The formation of surface (hydro-) oxide at higher potentials replaces the bisulfate adsorbates. Both linear (COL) and three-fold hollow bonded CO (COH) adsorbates were produced following CO adsorption at Ru(0001) in H2SO4, as was observed in our previous studies in HClO4. However, the amount of adsorbed CO observed in H2SO4 was ca. 10% less than that in HClO4; in addition, the COL and COH frequencies were higher in H2SO4, and the onset potential for COads oxidation 25 mV lower. These new results are interpreted in terms of a model in which the adsorbed bisulfate weakens the CO adlayer, allowing the active Ru oxide layer to form at lower potentials. Significantly different results were observed at open circuit in H2SO4 compared both to the data under potential control and to our earlier data in HClO4, and these observations were rationalized in terms of the adsorbed HSO4- anions (pre-adsorbed at -200 mV) inhibiting the oxidation of the surface at open circuit (after stepping from the initial potential of -200 mV), as the latter was no longer driven by the imposed electrochemical potential but via chemical oxidation by trace dissolved O-2. Results from experiments at open circuit at 55 degrees C and using oxygen-saturated H2SO4 supported this model. The difference in Ru surface chemistry between imposed electrochemical control and chemical control has potential implications with respect to fuel cell electrocatalysis.