Comparative genomics reveals `novel' Fur regulated sRNAs and coding genes in diverse proteobacteria

Ferric uptake regulator (Fur) is a transcriptional regulator controlling the expression of genes involved in iron homeostasis and plays an important role in pathogenesis. Fur-regulated sRNAs/CDSs were found to have upstream Fur Binding Sites (FBS). We have constructed a Positional Weight Matrix from 100 known FBS (19 nt) and tracked the `Orphan' FBSs. Possible Fur regulated sRNAs and CDSs were identified by comparing their genomic locations with the `Orphan' FBSs identified. Thirty-eight `novel' and all known Fur regulated sRNAs in nine proteobacteria were identified. In addition, we identified high scoring FBSs in the promoter regions of the 304 CDSs and 68 of them were involved in siderophore biosynthesis, iron-transporters, two-component system, starch/sugar metabolism, sulphur/methane metabolism, etc. The present study shows that the Fur regulator controls the expression of genes involved in diverse metabolic activities and it is not limited to iron metabolism alone. (C) 2012 Elsevier B.V. All rights reserved.

Status, biology, and ecology of fur seals: Proceedings of an International Symposium and Workshop Cambridge, England, 23-27 April 1984

The 1984 International Symposium and Workshop on the Biology of Fur Seals originated in informal talks in 1981. However, the scope and focus of the symposium remained unclear until an informal workshop was held in San Diego in June 1983. This meeting synthesised data on the foraging and pup attendance activities of six species of fur seals, and attempted to formulate a coherent framework for the adaptations associated with their maternal strategies (Gentry et al. 1986). During the workshop it was clear that comparative data on many key aspects of fur seal biology and ecology were missing. This absence of data applied not only to less well known species, for some of which considerable unpublished data existed, but also to better known species for which research in some areas had either been neglected or unreported. The value of applying the comparative method to seals, especially comparisons integrating physiology, ecology, and reproductive biology, was amply demonstrated by the results of the 1983 workshop (Gentry and Kooyman 1986). However, we were also aware that many other problems outside the area of maternal strategies could benefit from comparative data, such as recovery of populations from the effects of harvesting. Therefore, to accommodate the range of potential research, we organized this symposium to produce an up-to-date synthesis of relevant information for all species of fur seals. It was also clear that fur seal research could benefit from increased communication and collaboration among its practitioners. To foster the spread of ideas, we held oral presentations on some topics of current research and techniques and organized workshops on specific topics, in addition to providing opportunities for informal talks among participants. Thanks to generous support from the British Antarctic Survey, the National Marine Fisheries Service of the United States, and the Scientific Committee on Antarctic Research, the International Fur Seal Symposium was held at the British Antarctic Survey, Cambridge, England, 23-27 April 1984. The 36 participants are shown in Figure 1. A list of Symposium participants and authors is presented in Appendix 1 of the Proceedings. (PDF file contains 220 pages.)

Management of northern fur seals on the Pribilof Islands, Alaska, 1786-1981

This paper includes information about the Pribilof Islands since their discovery by Russia in 1786 and the population of northern fur seals, Cailorhinus ursinus, that return there each summer to bear young and to breed. Russia exterminated the native population of sea Oilers, Enhydra lulris, here and nearly subjected the northern fur seal to the same fate before providing proper protection. The northern fur seal was twice more exposed to extinction following the purchase of Alaska and the Pribilof Islands by the United States in 1867. Excessive harvesting was stopped as a result of strict management by the United States of the animals while on land and a treaty between Japan, Russia, Great Britain (for Canada), and the United States that provided needed protection at sea. In 1941, Japan abrogated this treaty which was replaced by a provisional agreement between Canada and the United States that protected the fur seals in the eastern North Pacific Ocean. Japan, the U.S.S.R., Canada, and the United States again insured the survival of these animals with ratification in 1957 of the "Interim Convention on the Conservation of North Pacific Fur Seals," which is still in force. Under the auspices of this Convention, the United States launched an unprecedented manipulation of the resource through controlled removal during 1956-68 of over 300,000 females considered surplus. The biological rationale for the reduction was that production of fewer pups would result in a higher pregnancy rate and increased survival, which would, in turn, produce a sustained annual harvest of 55,000-60,000 males and 10,000-30,000 females. Predicted results did not occur. The herd reduction program instead coincided with the beginning of a decline in the number of males available for harvest. Suspected but unproven causes were changes in the toll normally accounted for by predation, disease, adverse weather, and hookworms. Depletion of the animals' food supply by foreign fishing Heets and the entanglement of fur seals in trawl webbing and other debris discarded at sea became a prime suspect in altering the average annual harvest of males on the Pribilof Islands from 71,500 (1940-56) to 40,000 (1957-59) to 36,000 (1960) to 82,000 (1961) and to 27,347 (1972-81). Thus was born the concept of a research control area for fur seals, which was agreed upon by members of the Convention in 1973 and instituted by the United States on St. George Island beginning in 1974. All commercial harvesting of fur seals was stopped on St. George Island and intensive behavioral studies were begun on the now unharvested population as it responds to the moratorium and attempts to reach its natural ceiling. The results of these and other studies here and on St. Paul Island are expected to eventually permit a comparison between the dynamics of unharvested and harvested populations, which should in turn permit more precise management of fur seals as nations continue to exploit the marine resources of the North Pacific Ocean and Bering Sea. (PDF file contains 32 pages.)

Eine Chance fur eine positive Bestandsentwicklung in der Ostsee? Hoffnungswoller Dorschjahrgang in der Ostee bestagtigt

Der Stratified Random Survey, der vom 22. 10. bis 3.11. 2004 in der Arkonasee, Kieler und Mecklenburger Bucht durchgef

Fangmengenbegrenzungen in der Garnelenfischerei - eine Chance fur weitere Biefangreduzierungen

Aiming for price stabilisation Danish, German and Dutch brown shrimp fisheries agreed on weekly catch limitations for the years 1998 and 1999. This resulted in fishing effort reduction of 18 % of the total number of fishing trips in 1998 and up to 24 % in summer. In that period highest abundance of young plaice occurs in the Wadden Sea which is the fishing area of the brown shrimp fleets of Germany and the Netherlands. Consequently as a side effect a reduction of the total annual by-catch especially of young plaice must have occurred. According to formerly conducted EU-studies and investigations the by-catch reduction due to the agreed catch limitations should have led to survival of millions of young plaice. They give a potential of some extra catch in coming years which is 2,5 % of the total TAC of plaice in the North Sea. Compared to the German TAC in year 2000 the gain equals 44 %. The catch limitations effect on by-catch reduction in 1998 was in the same order of magnitude of the one achievable by technical measures in net selection applied in that fishery and research. A combination of both could substantially reduce traditional by-catch levels in brown shrimp fisheries.Aiming for price stabilisation Danish, German and Dutch brown shrimp fisheries agreed on weekly catch limitations for the years 1998 and 1999. This resulted in fishing effort reduction of 18 % of the total number of fishing trips in 1998 and up to 24 % in summer. In that period highest abundance of young plaice occurs in the Wadden Sea which is the fishing area of the brown shrimp fleets of Germany and the Netherlands. Consequently as a side effect a reduction of the total annual by-catch especially of young plaice must have occurred. According to formerly conducted EU-studies and investigations the by-catch reduction due to the agreed catch limitations should have led to survival of millions of young plaice. They give a potential of some extra catch in coming years which is 2,5 % of the total TAC of plaice in the North Sea. Compared to the German TAC in year 2000 the gain equals 44 %. The catch limitations effect on by-catch reduction in 1998 was in the same order of magnitude of the one achievable by technical measures in net selection applied in that fishery and research. A combination of both could substantially reduce traditional by-catch levels in brown shrimp fisheries.

Indol als moglicher Indikator fur nicht einwandfreie hygiensiche Be- bzw. Verbarbeitung tropischer Garnelen

Indole concentrations of 114 samples of tropical shrimp, 3 samples of crayfish, and 3 samples of cold water crustaceans were determined. Cold water crustaceans contained less than 15 μg/kg indole, whereas crayfish contained between 62 and 123 μg indole/kg. In 81 samples (70 %) of tropical shrimp indole content was less than 50 μg/kg, but in 12 samples (11 %) indole content exceeded 250 μg/kg. Different batches of some products with high indole levels as well as of some products with low indole levels were analysed. Except for one sample high as well as low indole levels could be confirmed. Highest indole concentrations were determined in samples which origin was specified as South Pacific, Indo-Pacific, Malaysia, India and India/Vietnam

Investigations on the vertical migration of planktonic Crustacea in the Bodensee-Obersee. [Translation from: Schriften des Vereins fur Geschichte des Bodensees und seiner Umgebung, 87, 177-187, 1969.]

The vertical zoning of the planktonic Crustacea in a lake is the expression of a complex set of different factors. Besides the measurable, external influences such as light, temperature, acid and C02 stratification, a particularly large part is played by internal factors, which co-ordinate a specific reaction in each species depending on state of development, age and sex. Supporting this extensive, predictable, annual course of diurnal depths and the daily vertical migrations, whose extent is again dependent on external conditions, primarily of course on the amount of light. The individual factors mentioned, however, are here also of great significance. Within the scope of a long-term study of the planktonic Copepoda of Lake Constance, some day and night series were in 1963 also carried out in the Obersee, in order to obtain at least volumetric data on the extent of the daily migrations of these creatures.