Characterization of 27 microsatellite loci in the European flat oyster Ostrea edulis

The flat oyster Ostrea edulis is native to Europe and populations have been severely depleted by the parasite Bonamia ostreae since the 1980s. Additional genetic markers are required to improve population genetics study and linkage map development for selection for B. ostrea-resistance in this species. Here, we characterized 27 novel microsatellite loci for O. edulis. Number of alleles per locus ranged from 6 to 25 and observed heterozygosity between 0.375 and 1. Null alleles were suggested at a few loci but most loci were in Hardy-Weinberg agreement enabling their reliable use in further population and mapping genetics approaches.

An alternative genotyping method using dye-labeled universal primer to reduce unspecific amplifications

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Quantitative stem-loop RT-PCR for detection of microRNAs

Plant microRNAs (miRNAs) are a class of endogenous small RNAs that are essential for plant development and survival. They arise from larger precursor RNAs with a characteristic hairpin structure and regulate gene activity by targeting mRNA transcripts for cleavage or translational repression. Efficient and reliable detection and quantification of miRNA expression has become an essential step in understanding their specific roles. The expression levels of miRNAs can vary dramatically between samples and they often escape detection by conventional technologies such as cloning, northern hybridization and microarray analysis. The stem-loop RT-PCR method described here is designed to detect and quantify mature miRNAs in a fast, specific, accurate and reliable manner. First, a miRNA-specific stem-loop RT primer is hybridized to the miRNA and then reverse transcribed. Next, the RT product is amplified and monitored in real time using a miRNA-specific forward primer and the universal reverse primer. This method enables miRNA expression profiling from as little as 10 pg of total RNA and is suitable for high-throughput miRNA expression analysis.

Amphibian skin peptides and their corresponding cDNAs from single lyophilized secretion samples: identification of novel brevinins from three species of Chinese frogs

Brevinins are peptides of 24 amino acid residues, originally isolated from the skin of the Oriental frog, Rana brevipoda porsa, by nature of their microbicidal activity against a wide range of Gram-positive and Gram-negative bacteria and against strains of pathogenic fungi. cDNA libraries were constructed from lyophilized skin secretion of three, unstudied species of Chinese frog, Odorrana schmackeri, Odorrana versabilis and Pelophylax plancyi fukienensis, using our recently developed technique. In this report, we describe the “shotgun” cloning of novel brevinins by means of 3'-RACE, using a “universal” degenerate primer directed towards a highly conserved nucleic acid sequence domain within the 5'-untranslated region of previously characterized frog skin peptide cDNAs. Novel brevinins, deduced from cloned cDNA open-reading frames, were subsequently identified as mature peptides in the same samples of respective species skin secretions. Bioinformatic analysis of both prepro-brevinin nucleic acid sequences and translated open-reading frame amino acid sequences revealed a highly conserved signal peptide domain and a hypervariable anti-microbial peptide-encoding domain. The experimental approach described here can thus rapidly provide robust structural data on skin anti-microbial peptides without harming the donor amphibians.

Detection Methods for the Genus Lysobacter and the Species Lysobacter enzymogenes

Strains of Lysobacter enzymogenes, a bacterial species with biocontrol activity, have been detected via 16S rDNA sequences in soil in different parts of the world. In most instances, however, their occurrence could not be confirmed by isolation, presumably because the species occurred in low numbers relative to faster-growing species of Bacillus or Pseudomonas. In this study, we developed DNA-based detection and enrichment culturing methods for Lysobacter spp. and L. enzymogenes specifically. In the DNA-based method, a region of 16S rDNA conserved among Lysobacter spp. (L4: GAG CCG ACG TCG GAT TAG CTA GTT), was used as the forward primer in PCR amplification. When L4 and universal bacterial primer 1525R were used to amplify DNA from various bacterial species, an 1100-bp product was found in Lysobacter spp. exclusively. The enrichment culturing method involved culturing soils for 3 days in a chitin-containing broth amended with antibiotics. Bacterial strains in the enrichment culture were isolated on yeast-cell agar and then identified by 16S rDNA sequence analysis. A strain of L. enzymogenes added to soils was detected at populations as low as 102 and 104 CFU/g soil by PCR amplification and enrichment culturing, respectively. In a survey of 58 soil samples, Lysobacter was detected in 41 samples by PCR and enrichment culture, out of which 6 yielded strains of Lysobacter spp. by enrichment culture. Among isolated strains, all were identified to be L. enzymogenes, with the exception of a strain of L. antibioticus. Although neither method alone is completely effective at detecting L. enzymogenes, they are complementary when used together and may provide new information on the spatial distribution of the species in soil.

Ensayo sobre la jurisprudencia universal : en donde se examina quales el primer principio de la justicia y el fundamento de la obligacion moral.

UANL

Lucio Anneo Séneca : primer escritor español de alcance universal.

Se presenta un estudio sobre la figura de Séneca como uno de los hombres que ha dejado huella en la historia del pensamiento moral y como orientador de conductas, cuyo nombre figura al lado de Sócrates, Platón y Cicerón. El estudio se desarrolla según cuatro puntos: la romanización de España en la época de Séneca, su obra literaria, su influencia y el españolismo de Séneca.

A universal primer for isolation of fragments of a gene encoding phytoene desaturase for use in virus-induced gene silencing (VIGS) studies

We have been using Virus-Induced Gene Silencing (VIGS) to test the function of genes that are candidates for involvement in floral senescence. Although VIGS is a powerful tool for assaying the effects of gene silencing in plants, relatively few taxa have been studied using this approach, and most that have are in the Solanaceae. We typically use silencing of phytoene desaturase (PDS) in preliminary tests of the feasibility of using VIGS. Silencing this gene, whose product is involved in carotene biosynthesis, results in a characteristic photobleaching phenotype in the leaves. We have found that efficient silencing requires the use of fragments that are more than 90% homologous to the target gene. To simplify testing the effectiveness of VIGS in a range of species, we designed a set of universal primers to a region of the PDS gene that is highly conserved among species, and that therefore allows an investigator to isolate a fragment of the homologous PDS gene from the species of interest. We report the sequences of these primers and the results of VIGS experiments in horticultural species from the Asteraceae, Leguminosae, Balsaminaceae and Solanaceae.

Carta defensiva, que sobre el primer tomo del Theatro critico universal, que diò a luz ... Fr. Benito Feijoò la escriviò su mas aficionado amigo, D. Martin Martinez ...

Mode of access: Internet.

Ensayo sobre la jurisprudencia universal : en donde se examina quál es el primer principio de la justicia y el fundamento de la obligación moral ... /

Mode of access: Internet.

Cronología universal: seguida de la lista de los grandes Estados antiguos y modernos, de las dinastías poderosas y los principales soberanos de primer orden /

Mode of access: Internet.

Sermones solemnes, aclamacion universal, festiva de España a la beatificacion de Nuestro Glorioso Padre Beato San Iuan de la Cruz ... primer Descalzo ... en diversos discursos panegiricos de los mayores Maestros de la Facultad /

Mode of access: Internet.

Echolocation call production during aerial and terrestrial locomotion by New Zealand's enigmatic lesser short-tailed bat, Mystacina tuberculata

Linkage of echolocation call production with contraction of flight muscles has been suggested to reduce the energetic cost of flight with echolocation, such that the overall cost is approximately equal to that of flight alone. However, the pattern of call production with limb movement in terrestrially agile bats has never been investigated. We used synchronised high-speed video and audio recordings to determine patterns of association between echolocation call production and limb motion by Mystacina tuberculata Gray 1843 as individuals walked and flew, respectively. Results showed that there was no apparent linkage between call production and limb motion when bats walked. When in flight, two calls were produced per wingbeat, late in the downstroke and early in the upstroke. When bats walked, calls were produced at a higher rate, but at a slightly lower intensity, compared with bats in flight. These results suggest that M. tuberculata do not attempt to reduce the cost of terrestrial locomotion and call production through biomechanical linkage. They also suggest that the pattern of linkage seen when bats are in flight is not universal and that energetic savings cannot necessarily be explained by contraction of muscles associated with the downstroke alone.

Efeito de um primer autocondicionante na resistência ao cisalhamento de bráquetes com compósito pré-incorporado

O uso de primers autocondicionantes e de bráquetes com compósito pré-incorporado tem sido apresentado como uma alternativa para a redução de passos clínicos. O propósito deste estudo foi avaliar o efeito de um primer autocondicionante (Transbond Plus Self-Etching Primer - SEP) na resistência ao cisalhamento de bráquetes com compósito pré-incorporado colados in vivo. A amostra consistiu de 92 dentes obtidos de 23 pacientes com indicação prévia de extração de 4 pré-molares. Os dentes foram divididos em 4 grupos, sendo os bráquetes colados pelo mesmo operador, alternando os quadrantes em cada paciente: Grupo 1 (controle) - Ácido fosfórico à 37% + primer (Transbond XT Primer) + compósito (Transbond XT Adhesive Paste) + bráquete convencional; Grupo 2 - Ácido fosfórico à 37% + primer + bráquete com compósito pré-incorporado; Grupo 3 SEP + compósito + bráquete convencional; Grupo 4 - SEP + bráquete com compósito pré-incorporado. Após 30 dias os pré-molares foram extraídos, sendo submetidos ao teste de resistência ao cisalhamento através da uma Máquina de Ensaios Universal, com velocidade de 0,5mm/min. Os dados obtidos pelos grupos foram analisados com 2-way ANOVA (p<0,05). As forças médias e desvios padrão obtidos foram os seguintes: Grupo 1 = 11,35 (2,36) MPa; Grupo 2 = 9,77 (2,49) MPa; Grupo 3 = 10,89 (2,60) MPa; e Grupo 4 = 10,16 (2,75) MPa. Não foi observada diferença significativa entre o uso do SEP e o de condicionador e primer tradicionais (p = 0,948). De qualquer modo, diferenças significativas na força de adesão foram observadas quando utilizados bráquetes com compósito pré-incorporado (p = 0,032). Pode ser concluído que a combinação do primer autocondicionante com o bráquete com compósito pré-incorporado apresentou valores de força de adesão adequados, sendo promissora para uso clínico.

Multiplexing with three-primer PCR for rapid and economical microsatellite validation.

The next generation sequencing revolution has enabled rapid discovery of genetic markers, however, development of fully functioning new markers still requires a long and costly process of marker validation. This study reports a rapid and economical approach for the validation and deployment of polymorphic microsatellite markers obtained from a 454 pyrosequencing library of Atlantic cod, Gadus morhua, Linnaeus 1758. Primers were designed from raw reads to amplify specific amplicon size ranges, allowing effective PCR multiplexing. Multiplexing was combined with a three-primer PCR approach using four universal tails to label amplicons with separate fluorochromes. A total of 192 primer pairs were tested, resulting in 73 polymorphic markers. Of these, 55 loci were combined in six multiplex panels each containing between six and eleven markers. Variability of the loci was assessed on G. morhua from the Celtic Sea (n 46) and the Scotian Shelf (n 46), two locations that have shown genetic differentiation in previous studies. Multilocus FST between the two samples was estimated at 0.067 (P 0.001). After three loci potentially under selection were excluded, the global FST was estimated at 0.043 (P 0.001). Our technique combines three- primer and multiplex PCR techniques, allowing simultaneous screening and validation of relatively large numbers of microsatellite loci.