Feature-oriented regional modeling and simulations (FORMS) for the western South Atlantic: Southeastern Brazil region

The multi-scale synoptic circulation system in the southeastern Brazil (SEBRA) region is presented using a feature-oriented approach. Prevalent synoptic circulation structures, or ""features,"" are identified from previous observational studies. These features include the southward-flowing Brazil Current (BC), the eddies off Cabo Sao Tome (CST - 22 degrees S) and off Cabo Frio (CF - 23 degrees S), and the upwelling region off CF and CST. Their synoptic water-mass (T-S) structures are characterized and parameterized to develop temperature-salinity (T-S) feature models. Following [Gangopadhyay, A., Robinson, A.R., Haley, PJ., Leslie, W.J., Lozano, C.j., Bisagni, J., Yu, Z., 2003. Feature-oriented regional modeling and simulation (forms) in the gulf of maine and georges bank. Cont. Shelf Res. 23 (3-4), 317-353] methodology, a synoptic initialization scheme for feature-oriented regional modeling and simulation (FORMS) of the circulation in this region is then developed. First, the temperature and salinity feature-model profiles are placed on a regional circulation template and objectively analyzed with available background climatology in the deep region. These initialization fields are then used for dynamical simulations via the Princeton Ocean Model (POM). A few first applications of this methodology are presented in this paper. These include the BC meandering, the BC-eddy interaction and the meander-eddy-upwelling system (MEUS) simulations. Preliminary validation results include realistic wave-growth and eddy formation and sustained upwelling. Our future plan includes the application of these feature models with satellite, in-situ data and advanced data-assimilation schemes for nowcasting and forecasting the SEBRA region. (c) 2008 Elsevier Ltd. All rights reserved.

Paleocoenographic investigations on sediment profile GeoB6008

Near-shore waters along the northwest African margin are characterized by coastal upwelling and represent one of the world's major upwelling regions. Sea surface temperature (SST) records from Moroccan sediment cores, extending back 2500 years, reveal anomalous and unprecedented cooling during the 20th century, which is consistent with increased upwelling. Upwelling-driven SSTs also vary out of phase with millennial-scale changes in Northern Hemisphere temperature anomalies (NHTAs) and show relatively warm conditions during the Little Ice Age and relatively cool conditions during the Medieval Warm Period. Together, these results suggest that coastal upwelling varies with NHTAs and that upwelling off northwest Africa may continue to intensify as global warming and atmospheric CO2 levels increase.

Geochemical records of sediment cores from the Sea of Japan

Intervals of organic C- and carbonate-rich laminated sediments occur in the Sea of Japan with roughly the same frequency as temperature changes observed in Greenland ice cores, providing clear evidence of rapid oceanographic change during the past 36 kyr. Planktonic foraminiferal d18O data suggest that only the laminated sediments deposited during the Last Glacial Maximum (LGM), and perhaps one other interval formed during a period of increased water column stratification. Sedimentary Re and Mo data are consistent with bottom waters that were sulfidic during the LGM and suboxic during other laminated intervals. Results of a numerical model of Corg and Re burial are consistent with a mechanism whereby an increased Corg flux to the seafloor drove oxygen concentrations toward depletion during times of deposition of the suboxic laminated intervals. Such a process could have resulted from increased upwelling driven either by increased deep water formation due to colder and/or more saline surface waters or by stronger northeasterly monsoonal winds.

Diatoms and laminae of Mediterranean sapropels

The origins of sapropels (sedimentary layers rich in organic carbon) are unclear, yet they may be a key to understanding the influence of climate on ocean eutrophication, the mechanisms of sustaining biological production in stratified waters and the genesis of petroleum source rocks (Rohling, 1994, doi:10.1016/0025-3227(94)90202-X; Castradori, 1993, doi:10.1029/93PA00756; Calvert et al., 1992, doi:10.1038/359223a0). Recent microfossil studies of foraminifera (Rohling, 1994, doi:10.1016/0025-3227(94)90202-X) and calcareous nannofossils (Castradori, 1993, doi:10.1029/93PA00756) have focused attention on a deep chlorophyll maximum as a locus for the high production inferred (Calvert et al., 1992, doi:10.1038/359223a0) for sapropel formation, but have not identified the agent responsible. Here we report the results of a high-resolution, electron-microscope-based study of a late Quaternary laminated sapropel in which the annual flux cycle has been preserved. We find that much of the production was by diatoms, both mat-forming and other colonial forms, adapted to exploit a deep nutrient supply trapped below surface waters in a stratified water column. Reconstructed organic-carbon and opal fluxes to the sediments are comparable to those at high-productivity sites in today's oceans, and calculations based on diatom Si/C ratios suggest that the high organic-carbon content of sapropels may be entirely accounted for by sedimenting diatoms. We propose that this style of production may have been common in ancient Palaeogene and Cretaceous seas, environments for which conventional appeals to upwelling-driven production to account for the occurrence of diatomites, and some organic-carbon-rich sediments, have never seemed wholly appropriate.

Pliocene to Pleistocene calcium carbonate and organic carbon record of ODP Hole 117-722B

Site 722 provides high resolution records of percent CaCO3, magnetic susceptibility, d18O, organic carbon, and coarse fraction for the past 3.4 m.y. from the crest of the Owen Ridge, northwestern Arabian Sea. Within this time interval, most of the carbonate percent variations can be attributed to terrigenous dilution and do not reflect changes in the carbonate system. From the late Pliocene to Present, the average rate of calcium carbonate accumulation increases from 1 to 3 g/cm**2/k.y. and the average accumulation of organic carbon decreases from 75 to 30 mg/cm**2/k.y. The carbonate component is more dissolved in the older interval. The long-term variations in carbonate accumulation may reflect a greater input of organic matter in the late Pliocene, which decomposes to produce CO2 and dissolve carbonate. Magnetic susceptibility and % noncarbonate (100 - CaCO3%) reflect changes in the amount of the lithogenic component in the sediments. The period of variation of lithogenic material is the same period as the original forcing of the regional summer monsoon, however, the timing matches global aridity patterns and global ice volume (sea level) changes. This preliminary analysis suggests that the high frequency variation of lithogenic material persists for at least the last 3.4 m.y. Within the last million years, calcium carbonate accumulation has a large amplitude signal that covaries with major changes in ice volume. Both calcium carbonate and noncarbonate (mostly terrigenous) accumulation are greatest during glacial stages. Interglacial intervals are characterized by low mass accumulation rates, increased foraminifer fragmentation, and increased opal concentration. The accumulation of organic carbon matches the high frequency changes in sedimentation rates. We attribute this high correlation to enhanced preservation of organic carbon by increased sedimentation rate. Of the three major biological components studied, only opal exhibits the variations expected for a biological productivity system forced by monsoonal upwelling driven by changes in northern hemisphere summer radiation.

Coastal Upwelling of the South Eastern Arabian Sea - An Integrated Approach

Upwelling regions occupies only a small portion of the global ocean surface. However it accounts for a large fraction of the oceanic primary production as well as fishery. Therefore understanding and quantifying the upwelling is of great importance for the marine resources management. Most of the coastal upwelling zones in the Arabian Sea are wind driven uniform systems. Mesoscale studies along the southwest coast of India have shown high spatial and temporal variability in the forcing mechanism and intensity of upwelling. There exists an equatorward component of wind stress as similar to the most upwelling zones along the eastern oceanic boundaries. Therefore an offshore component of surface Ekman transport is expected throughout the year. But several studies supported with in situ evidences have revealed that the process is purely recurring on seasonal basis. The explanation merely based on local wind forcing alone is not sufficient to support the observations. So, it is assumed that upwelling along the South Eastern Arabian Sea is an effect of basin wide wind forcing rather than local wind forcing. In the present study an integrated approach has been made to understand the process of upwelling of the South Eastern Arabian Sea. The latitudinal and seasonal variations (based on Sea Surface Temperature, wind forcing, Chlorophyll a and primary production), forcing mechanisms (local wind and remote forcing) and the factors influencing the system (Arabian Sea High Saline Water, Bay of Bengal water, runoff, coastal geomorphology) are addressed herewith.

Mechanisms for tropical upwelling in the stratosphere

The dynamics of the tropical upwelling branch of the stratospheric Brewer–Dobson circulation are examined, with a particular focus on the role of the middle-atmosphere Hadley circulation. Upwelling is examined in terms of both the diabatic circulation and Lagrangian trajectories using a zonally symmetric balance model. The behavior of the wave-driven circulation in the presence of angular momentum redistribution by the Hadley circulation is also considered. The results of the zonally symmetric model are compared with fields from a middle-atmosphere GCM. It is found that the Hadley circulation makes a significant contribution to annual mean tropical upwelling at the upwelling maximum in the vicinity of the stratopause, and can account for most of the annual mean upwelling seen in the GCM. In the mid- to lower stratosphere, the role of the Hadley circulation is much weaker and wave drag appears to be required to explain the observed upwelling, although the Hadley circulation makes a nonnegligible contribution to the annual cycle of the upwelling. Subtropical wave drag can produce annual mean upwelling through a nonlinear mechanism; viscosity is not required. However, the magnitude of the observed upwelling suggests that wave drag must penetrate quite close to the equator.

Ionospheric ion upwelling in the wake of flux transfer events at the dayside magnetopause

The effects of flux transfer events (FTE) on the dayside auroral ionosphere are studied, using a simple twin-vortex model of induced ionospheric plasma flow. It is shown that the predicted and observed velocities of these flows are sufficient to drive nonthermal plasma in the F region, not only within the newly opened flux tube of the FTE, but also on the closed, or "old" open, field lines around it. In fact, with the expected poleward neutral wind, the plasma is more highly nonthermal on the flanks of, but outside, the open flux tube: EISCAT observations indicate that plasma is indeed driven into nonthermal distributions in these regions. The nonthermal plasma is thereby subject to additional upforce due to the resulting ion temperature anisotropy and transient expansion due to Joule heating and also to ion accelerations associated with the FTE field aligned current system. Any upflows produced on closed field lines in the vicinity of the FTE are effectively bunched-up in the "wake" of the FTE. Observations from the AMPTE-UKS satellite at the magnetopause reveal ion upflows of energy ∼100 eV flowing out from the ionosphere on closed field lines which are only found in the wake of the FTE. Such flows are also only found shortly after two, out of all the FTEs observed by AMPTE-UKS. The outflow from the ionosphere is two orders of magnitude greater than predicted for the "classical" polar wind. It is shown that such ionospheric ion flows are only expected in association with FTEs on the magnetopause which are well removed from the sub-solar point-either towards dusk or, as in the UKS example discussed here, towards dawn. It is suggested that such ionospheric ions will only be observed if the center of the FTE open flux tube passes very close to the satellite. Consequently, we conclude the ion upflows presented here are probably driven by the second of two possible source FTEs and are observed at the satellite with a lag after the FTE which is less than their time-of-flight.

Upwelling in the Eastern Subtropical North Atlantic Ocean

[EN]Coastal upwelling in the eastern margin and offshore curl-driven upwelling in the southeastern margin, make the subtropical Northeast Atlantic a region of major primary productivity. When examining a broad zonal area, from the coast to 40_W, we find that the upward transport of nutrients due to offshore curl-driven upwelling becomes the main control on productivity. Nevertheless, despite its relatively small zonal extension of about 100 km, coastal upwelling extends its impact towards the open ocean through offshore Ekman transport and convergence of the meridional flow at Cape Blanc (21_N).

A study of air-sea interaction processes on water mass formation and upwelling in the Mediterranean sea

Air-sea interactions are a key process in the forcing of the ocean circulation and the climate. Water Mass Formation is a phenomenon related to extreme air-sea exchanges and heavy heat losses by the water column, being capable to transfer water properties from the surface to great depth and constituting a fundamental component of the thermohaline circulation of the ocean. Wind-driven Coastal Upwelling, on the other hand, is capable to induce intense heat gain in the water column, making this phenomenon important for climate change; further, it can have a noticeable influence on many biological pelagic ecosystems mechanisms. To study some of the fundamental characteristics of Water Mass Formation and Coastal Upwelling phenomena in the Mediterranean Sea, physical reanalysis obtained from the Mediterranean Forecating System model have been used for the period ranging from 1987 to 2012. The first chapter of this dissertation gives the basic description of the Mediterranean Sea circulation, the MFS model implementation, and the air-sea interaction physics. In the second chapter, the problem of Water Mass Formation in the Mediterranean Sea is approached, also performing ad-hoc numerical simulations to study heat balance components. The third chapter considers the study of Mediterranean Coastal Upwelling in some particular areas (Sicily, Gulf of Lion, Aegean Sea) of the Mediterranean Basin, together with the introduction of a new Upwelling Index to characterize and predict upwelling features using only surface estimates of air-sea fluxes. Our conclusions are that latent heat flux is the driving air-sea heat balance component in the Water Mass Formation phenomenon, while sensible heat exchanges are fundamental in Coastal Upwelling process. It is shown that our upwelling index is capable to reproduce the vertical velocity patterns in Coastal Upwelling areas. Nondimensional Marshall numbers evaluations for the open-ocean convection process in the Gulf of Lion show that it is a fully turbulent, three-dimensional phenomenon.

(Table S1) Diatom abundance in coastal upwelling systems

Coastal upwelling systems account for approximately half of global ocean primary production and contribute disproportionately to biologically driven carbon sequestration. Diatoms, silica-precipitating microalgae, constitute the dominant phytoplankton in these productive regions, and their abundance and assemblage composition in the sedimentary record is considered one of the best proxies for primary production. The study of the sedimentary diatom abundance (SDA) and total organic carbon content (TOC) in the five most important coastal upwelling systems of the modern ocean (Iberia-Canary, Benguela, Peru-Humboldt, California and Somalia-Oman) reveals a global-scale positive relationship between diatom production and organic carbon burial. The analysis of SDA in conjunction with environmental variables of coastal upwelling systems such as upwelling strength, satellite-derived net primary production and surface water nutrient concentrations shows different relations between SDA and primary production on the regional scale. At the global-scale, SDA appears modulated by the capacity of diatoms to take up silicic acid, which ultimately sets an upper limit to global export production in these ocean regions.

A 300 kyr record of upwelling off Oman during the Late Quaternary: evidence of the Asian southwest monsoon

In the northwest Arabian Sea upwelling occurs each summer, driven by the strong SW monsoon winds. Upwelling results in high biological productivity and a distinctive assemblage of plankton species in the surface waters off Oman that are preserved in the sediments along the Oman continental margin, creating a geologic record of monsoon-driven upwelling. Sediments recovered from the Oman continental margin during Ocean Drilling Program leg 117 provide an opportunity to examine how upwelling has varied during the late Quaternary, spanning a longer interval than piston cores recovered prior to the ODP cruise. Variations in foraminifer shell accumulation and in the relative abundance of Globigerina bulloides indicate dominant cycles of variation at 1/100 kyr, the dominant frequency of glacial-interglacial variations, and at 1/23 kyr, the frequency of precessionally driven cycles in seasonal insolation. The strongest monsoon winds (indicated by increased upwelling) occurred during interglacial times when perihelion was aligned with the summer solstice, an orbital change that increased the insolation received during summer in the northern hemisphere. During glacial times upwelling was reduced, and although the precessional cycles were still present their amplitude was smaller. At both frequencies the upwelling cycles are in phase with minimum ice volume, evidence that glacial-interglacial climate changes also include changes to the climate system that influence the low-latitude monsoon. We attribute the decrease in the monsoon winds observed during glacial times to changes in bare land albedo over Asia and/or to changes in the areal extent and seasonal cycle in Asian snow cover that decrease the summer land-sea temperature contrast. Other mechanisms may also be involved. These new upwelling time series differ substantially from previous results, however the previous work relied on cores located farther offshore where upwelling is less intense and other physical mechanisms become important. Our results support the observations derived from atmospheric general circulation models of the atmosphere that indicate that both glacial boundary conditions, and the strength of summer insolation are important variables contributing to cycles in the monsoon winds during the late Quaternary.

Geochemistry of sediments from the upwelling off Morocco

The high-productive upwelling area off Morocco is part of one of the four major trade-wind driven continental margin upwelling zones in the world oceans. While coastal upwelling occurs mostly on the shelf, biogenic particles derived from upwelling are deposited mostly at the upper continental slope. Nutrient-rich coastal water is transported within the Cape Ghir filament region at 30°N up to several hundreds of kilometers offshore. Both upwelling intensity and filament activity are dependent on the strength of the summer Trades. This study is aimed to reconstruct changes in trade wind intensity over the last 250,000 years by the analysis of the productivity signal contained in the sedimentary biogenic particles of the continental slope and beneath the Cape Ghir filament. Detailed geochemical and geophysical analyses (TOC, carbonate, C/N, delta13Corg, delta15N, delta13C of benthic foraminifera, delta18O of benthic and planktic foraminifera, magnetic susceptibility) have been carried out at two sites on the upper continental slope and one site located further offshore influenced by the Cape Ghir filament. A second offshore site south of the filament was analyzed (TOC, magnetic susceptibility) to distinguish the productivity signal related to the filament signal from the general offshore variability. Higher productivity during glacial times was observed at all four sites. However, the variability of productivity during glacial times was remarkably different at the filament-influenced site compared to the upwelling-influenced continental slope sites. In addition to climate-related changes in upwelling intensity, zonal shifts of the upwelling area due to sea-level changes have impacted the sedimentary productivity record, especially at the continental slope sites. By comparison with other proxies related to the strength and direction of the prevailing winds (Si/Al ratio as grain-size indicator, pollen) the productivity record at the filament-influenced site reflects mainly changes in trade-wind intensity. Our reconstruction reveals that especially during glacial times trade-wind intensity was increased and showed a strong variability with frequencies related to precession.

Extreme Harmonic Generation In Electrically Driven Spin Resonance.

We report the observation of multiple harmonic generation in electric dipole spin resonance in an InAs nanowire double quantum dot. The harmonics display a remarkable detuning dependence: near the interdot charge transition as many as eight harmonics are observed, while at large detunings we only observe the fundamental spin resonance condition. The detuning dependence indicates that the observed harmonics may be due to Landau-Zener transition dynamics at anticrossings in the energy level spectrum.

Urothelial Carcinogen Resistance Driven By Stronger Toll-like Receptor 2 (tlr2) And Uroplakin Iii (up Iii) Defense Mechanisms: A New Model.

The objective of the study was to illustrate the applicability and significance of the novel Lewis urothelial cancer model compared to the classic Fisher 344. Fischer 344 and Lewis females rats, 7 weeks old, were intravesical instilled N-methyl-N-nitrosourea 1.5 mg/kg every other week for a total of four doses. After 15 weeks, animals were sacrificed and bladders analyzed: histopathology (tumor grade and stage), immunohistochemistry (apoptotic and proliferative indices) and blotting (Toll-like receptor 2-TLR2, Uroplakin III-UP III and C-Myc). Control groups received placebo. There were macroscopic neoplastic lesions in 20 % of Lewis strain and 70 % of Fischer 344 strain. Lewis showed hyperplasia in 50 % of animals, normal bladders in 50 %. All Fischer 344 had lesions, 20 % papillary hyperplasia, 30 % dysplasia, 40 % neoplasia and 10 % squamous metaplasia. Proliferative and apoptotic indices were significantly lower in the Lewis strain (p < 0.01). The TLR2 and UP III protein levels were significantly higher in Lewis compared to Fischer 344 strain (70.8 and 46.5 % vs. 49.5 and 16.9 %, respectively). In contrast, C-Myc protein levels were significantly higher in Fischer 344 (22.5 %) compared to Lewis strain (13.7 %). The innovative Lewis carcinogen resistance urothelial model represents a new strategy for translational research. Preservation of TLR2 and UP III defense mechanisms might drive diverse urothelial phenotypes during carcinogenesis in differently susceptible individuals.