Soft topographic map for clustering and classification of bacteria

In this work a new method for clustering and building a topographic representation of a bacteria taxonomy is presented. The method is based on the analysis of stable parts of the genome, the so-called “housekeeping genes”. The proposed method generates topographic maps of the bacteria taxonomy, where relations among different type strains can be visually inspected and verified. Two well known DNA alignement algorithms are applied to the genomic sequences. Topographic maps are optimized to represent the similarity among the sequences according to their evolutionary distances. The experimental analysis is carried out on 147 type strains of the Gammaprotebacteria class by means of the 16S rRNA housekeeping gene. Complete sequences of the gene have been retrieved from the NCBI public database. In the experimental tests the maps show clusters of homologous type strains and present some singular cases potentially due to incorrect classification or erroneous annotations in the database.

Topographic map, Manhattan, New York, N.Y., 1845 (Raster Image) (Image 2 of 3)

This layer is a georeferenced raster image of the historic paper map entitled: Topographical map of the city and county of New-York and the adjacent country : with views in the border of the principal buildings and interesting scenery of the island, engraved & printed by S. Stiles & Co. It was published by Sherman & Smith in 1845. Scale [ca. 1:16,000]. Covers Manhattan and adjacent portions of Brooklyn and New Jersey. This layer is image 2 of 3 total images of the three sheet source map, representing the middle portion of the map. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Universal Transverse Mercator (UTM) Zone 18N NAD83 projection. All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, index maps, legends, or other information associated with the principal map. This map shows features such as topography, ground cover, roads, drainage, selected public buildings, forts, city wards, squares, parks, and more. Relief is shown by hachures. Includes inset views: Broadway from the park -- Nieuw Amsterdam, 1659. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection as part of the Imaging the Urban Environment project. Maps selected for this project represent major urban areas and cities of the world, at various time periods. These maps typically portray both natural and manmade features at a large scale. The selection represents a range of regions, originators, ground condition dates, scales, and purposes.

Topographic map, Manhattan, New York, N.Y., 1845 (Raster Image) (Image 1 of 3)

This layer is a georeferenced raster image of the historic paper map entitled: Topographical map of the city and county of New-York and the adjacent country : with views in the border of the principal buildings and interesting scenery of the island, engraved & printed by S. Stiles & Co. It was published by Sherman & Smith in 1845. Scale [ca. 1:16,000]. Covers Manhattan and adjacent portions of Brooklyn and New Jersey. This layer is image 1 of 3 total images of the three sheet source map, representing the southern portion of the map. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Universal Transverse Mercator (UTM) Zone 18N NAD83 projection. All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, index maps, legends, or other information associated with the principal map. This map shows features such as topography, ground cover, roads, drainage, selected public buildings, forts, city wards, squares, parks, and more. Relief is shown by hachures. Includes inset views: Broadway from the park -- Nieuw Amsterdam, 1659. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection as part of the Imaging the Urban Environment project. Maps selected for this project represent major urban areas and cities of the world, at various time periods. These maps typically portray both natural and manmade features at a large scale. The selection represents a range of regions, originators, ground condition dates, scales, and purposes.

Topographic map, Manhattan, New York, N.Y., 1845 (Raster Image) (Image 3 of 3)

This layer is a georeferenced raster image of the historic paper map entitled: Topographical map of the city and county of New-York and the adjacent country : with views in the border of the principal buildings and interesting scenery of the island, engraved & printed by S. Stiles & Co. It was published by Sherman & Smith in 1845. Scale [ca. 1:16,000]. Covers Manhattan and adjacent portions of Brooklyn and New Jersey. This layer is image 3 of 3 total images of the three sheet source map, representing the northern portion of the map. The image inside the map neatline is georeferenced to the surface of the earth and fit to the Universal Transverse Mercator (UTM) Zone 18N NAD83 projection. All map collar and inset information is also available as part of the raster image, including any inset maps, profiles, statistical tables, directories, text, illustrations, index maps, legends, or other information associated with the principal map. This map shows features such as topography, ground cover, roads, drainage, selected public buildings, forts, city wards, squares, parks, and more. Relief is shown by hachures. Includes inset views: Broadway from the park -- Nieuw Amsterdam, 1659. This layer is part of a selection of digitally scanned and georeferenced historic maps from The Harvard Map Collection as part of the Imaging the Urban Environment project. Maps selected for this project represent major urban areas and cities of the world, at various time periods. These maps typically portray both natural and manmade features at a large scale. The selection represents a range of regions, originators, ground condition dates, scales, and purposes.

Topographic map of the property of Mr. William H. Roberts on N. side of W. 105th Place.

Red, black ink on tracing paper; topo. lines; unsigned; 75 x 37 cm.; Scale: 1" = 20' [from photographic copy by Lance Burgharrdt]

[Topographic map of portion of Aberdeen Proving Ground, Maryland, and topographical and architectural examples and exercises] /

Relief shown by contours.

Multi-Area Visuotopic Map Complexes in Macaque Striate and Extra-striate Cortex

We propose that a simple, closed-form mathematical expression--the Wedge-Dipole mapping--provides a concise approximation to the full-field, two-dimensional topographic structure of macaque V1, V2, and V3. A single map function, which we term a map complex, acts as a simultaneous descriptor of all three areas. Quantitative estimation of the Wedge-Dipole parameters is provided via 2DG data of central-field V1 topography and a publicly available data set of full-field macaque V1 and V2 topography. Good quantitative agreement is obtained between the data and the model presented here. The increasing importance of fMRI-based brain imaging motivates the development of more sophisticated two-dimensional models of cortical visuotopy, in contrast to the one-dimensional approximations that have been in common use. One reason is that topography has traditionally supplied an important aspect of "ground truth", or validation, for brain imaging, suggesting that further development of high-resolution fMRI will be facilitated by this data analysis. In addition, several important insights into the nature of cortical topography follows from this work. The presence of anisotropy in cortical magnification factor is shown to follow mathematically from the shared boundary conditions at the V1-V2 and V2-V3 borders, and therefore may not causally follow from the existence of columnar systems in these areas, as is widely assumed. An application of the Wedge-Dipole model to localizing aspects of visual processing to specific cortical areas--extending previous work in correlating V1 cortical magnification factor to retinal anatomy or visual psychophysics data--is briefly discussed.

Topographic bone thickness maps for Bonebridge implantations.

Bonebridge™ (BB) implantation relies on optimal anchoring of the bone-conduction implant in the temporal bone. Preoperative position planning has to account for the available bone thickness minimizing unwanted interference with underlying anatomical structures. This study describes the first clinical experience with a planning method based on topographic bone thickness maps (TBTM) for presigmoid BB implantations. The temporal bone was segmented enabling three-dimensional surface generation. Distances between the external and internal surface were color encoded and mapped to a TBTM. Suitable implant positions were planned with reference to the TBTM. Surgery was performed according to the standard procedure (n = 7). Computation of the TBTM and consecutive implant position planning took 70 min on average for a trained technician. Surgical time for implantations under passive TBTM image guidance was 60 min, on average. The sigmoid sinus (n = 5) and dura mater (n = 1) were exposed, as predicted with the TBTM. Feasibility of the TBTM method was shown for standard presigmoid BB implantations. The projection of three-dimensional bone thickness information into a single topographic map provides the surgeon with an intuitive display of the anatomical situation prior to implantation. Nevertheless, TBTM generation time has to be significantly reduced to simplify integration in clinical routine.

Map of Lewis-Glacier - Mt. Kenya 1983 (pdf 600 kB)

In February of 1983 a new terrestrial photogrammetric survey of Lewis Glacier (0° 9' S) has been made, from which the present topographic map has been produced in a scale of 1:5000. Simultaneously a survey of 1963 was evaluated giving a basis for computations of area and volume changes over the 20 year period: Lewis Glacier has lost 22 % of its area and 50 % of its volume. Based on maps and field observations of moraines 10 different stages were identified. Changes of area and volume can be determined for the periods after 1890, two older, undated stages are presumed to be of Little Ice Age-origin. Moderate losses from 1890 to 1920 were followed by strong, uninterrupted retreat up to present. In this respect Lewis Glacier behaves as all other equatorial glaciers that were closer examined. Compared to alpine glaciers the development was similar up to 1950. In the following years, however, the glaciers of the Alps gained mass and advanced while Lewis Glacier experienced its strongest losses from 1974 to 1983.

Map of National Zoological Park, D.C. /

Relief shown by contours and hachures.

Topographic optical profilometry of steep slope micro-optical transparent surfaces

Optical profilometers based on light reflection may fail at surfaces presenting steep slopes and highly curved features. Missed light, interference and diffraction at steps, peaks and valleys are some of the reasons. Consequently, blind areas or profile artifacts may be observed when using common reflection micro-optical profilometers (confocal, scanning interferometers, etc…). The Topographic Optical Profilometry by Absorption in Fluids (TOPAF) essentially avoids these limitations. In this technique an absorbing fluid fills the gap between a reference surface and the surface to profile. By comparing transmission images at two different spectral bands we obtain a reliable topographic map of the surface. In this contribution we develop a model to obtain the profile under micro-optical observation, where high numerical aperture (NA) objectives are mandatory. We present several analytical and experimental results, validating the technique’s capabilities for profiling steep slopes and highly curved micro-optical surfaces with nanometric height resolution.

Map of the U.S. Soldiers' Home, Washington, D.C. /

Relief shown by contours and hachures.

Map of n. eastern Virginia and vicinity of Washington /

Relief shown by hachures. Depths shown by soundings.

An accuracy assessment of ASTER stereo images-derived digital elevation model by using rational polynomial coefficient model

The along-track stereo images of Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor with 15 m resolution were used to generate Digital Elevation Model (DEM) on an area with low and near Mean Sea Level (MSL) elevation in Johor, Malaysia. The absolute DEM was generated by using the Rational Polynomial Coefficient (RPC) model which was run on ENVI 4.8 software. In order to generate the absolute DEM, 60 Ground Control Pointes (GCPs) with almost vertical accuracy less than 10 meter extracted from topographic map of the study area. The assessment was carried out on uncorrected and corrected DEM by utilizing dozens of Independent Check Points (ICPs). Consequently, the uncorrected DEM showed the RMSEz of ± 26.43 meter which was decreased to the RMSEz of ± 16.49 meter for the corrected DEM after post-processing. Overall, the corrected DEM of ASTER stereo images met the expectations.