Biodegradation of the herbicide mecoprop-p with soil depth and its relationship with class III tfdA genes

Mecoprop-p [(R)-2-(4-chloro-2-methylphenoxy) propanoic acid) is widely used in agriculture and poses an environmental concern because of its susceptibility to leach from soil to water. We investigated the effect of soil depth on mecoprop-p biodegradation and its relationship with the number and diversity of tfdA related genes, which are the most widely known genes involved in degradation of the phenoxyalkanoic acid group of herbicides by bacteria. Mecoprop-p half-life (DT50) was approximately 12 days in soil sampled from <30 cm depth, and increased progressively with soil depth, reaching over 84 days at 70–80 cm. In sub-soil there was a lag period of between 23 and 34 days prior to a phase of rapid degradation. No lag phase occurred in top-soil samples prior to the onset of degradation. The maximum degradation rate was the same in top-soil and sub-soil samples. Although diverse tfdAα and tfdA genes were present prior to mecoprop-p degradation, real time PCR revealed that degradation was associated with proliferation of tfdA genes. The number of tfdA genes and the most probable number of mecoprop-p degrading organisms in soil prior to mecoprop-p addition were below the limit of quantification and detection respectively. Melting curves from the real time PCR analysis showed that prior to mecoprop-p degradation both class I and class III tfdA genes were present in top- and sub-soil samples. However at all soil depths only tfdA class III genes proliferated during degradation. Denaturing gradient gel electrophoresis confirmed that class III tfdA genes were associated with mecoprop-p degradation. Degradation was not associated with the induction of novel tfdA genes in top- or sub-soil samples, and there were no apparent differences in tfdA gene diversity with soil depth prior to or following degradation.

Carbon surfaces for the oxidative quantification of pravastatin: glassy-carbon vs. screen-printed carbon electrodes

The electrooxidative behavior of pravastatin (PRV) in aqueous media was studied by square-wave voltammetry at a glassycarbon electrode (GCE) and at a screen-printed carbon electrode (SPCE). Maximum peak current intensities in a pH 5.0 buffer were obtained at +1.3 V vs. AgCl/Ag and +1.0 V vs. Ag for the GCE and SPCE surface respectively. Validation of the developed methodologies revealed good performance characteristics and confirmed their applicability to the quantification of PRV in pharmaceutical products, without significant sample pretreatment. A comparative analysis between the two electrode types showed that SPCEs are preferred as an electrode surface because of their higher sensitivity and the elimination of the need to clean the electrode’s surface for its renewal, which frequently is, if not always, the rate-limiting step in voltammetric analysis.

Voltammetric quantification of fluoxetine: application to quality control and quality assurance processes

The oxidative behaviour of fluoxetine was studied at a glassy carbon electrode in various buffer systems and at different pH using cyclic, differential pulse and square wave voltammetry. A new square wave voltammetric method suitable for the quality control of fluoxetine in commercial formulations has been developed using a borate pH 9 buffer solution as supporting electrolyte. Under optimized conditions, a linear response was obtained in the range 10 to 16 μM with a detection limit of 1.0 μM. Validation parameters such as sensitivity, precision and accuracy were evaluated. The proposed method was successfully applied to the determination of fluoxetine in pharmaceutical formulations. The results were statistically compared with those obtained by the reference high-performance liquid chromatographic method. No significant differences were found between the methods.

Susceptibility of Candida biofilms to photodynamic treatment

Dissertação de mestrado em Bioengenharia

Purification and characterization of two enantioselective alpha-ketoglutarate-dependent dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH.

Alpha-ketoglutarate-dependent (R)-dichlorprop dioxygenase (RdpA) and alpha-ketoglutarate-dependent (S)-dichlorprop dioxygenase (SdpA), which are involved in the degradation of phenoxyalkanoic acid herbicides in Sphingomonas herbicidovorans MH, were expressed and purified as His6-tagged fusion proteins from Escherichia coli BL21(DE3)(pLysS). RdpA and SdpA belong to subgroup II of the alpha-ketoglutarate-dependent dioxygenases and share the specific motif HXDX(24)TX(131)HX(10)R. Amino acids His-111, Asp-113, and His-270 and amino acids His-102, Asp-104, and His 257 comprise the 2-His-1-carboxylate facial triads and were predicted to be involved in iron binding in RdpA and SdpA, respectively. RdpA exclusively transformed the (R) enantiomers of mecoprop [2-(4-chloro-2-methylphenoxy)propanoic acid] and dichlorprop [2-(2,4-dichlorophenoxy)propanoic acid], whereas SdpA was specific for the (S) enantiomers. The apparent Km values were 99 microM for (R)-mecoprop, 164 microM for (R)-dichlorprop, and 3 microM for alpha-ketoglutarate for RdpA and 132 microM for (S)-mecoprop, 495 microM for (S)-dichlorprop, and 20 microM for alpha-ketoglutarate for SdpA. Both enzymes had high apparent Km values for oxygen; these values were 159 microM for SdpA and >230 microM for RdpA, whose activity was linearly dependent on oxygen at the concentration range measured. Both enzymes had narrow cosubstrate specificity; only 2-oxoadipate was able to replace alpha-ketoglutarate, and the rates were substantially diminished. Ferrous iron was necessary for activity of the enzymes, and other divalent cations could not replace it. Although the results of growth experiments suggest that strain MH harbors a specific 2,4-dichlorophenoxyacetic acid-converting enzyme, tfdA-, tfdAalpha-, or cadAB-like genes were not discovered in a screening analysis in which heterologous hybridization and PCR were used.

O desenvolvimento de culturas tolerantes ao herbicida diclorofenoxiacetato: revisão de literatura

O composto diclorofenoxiacetato (2,4-D) foi o primeiro herbicida orgânico, sistêmico, seletivo e de aplicação em pós-emergência desenvolvido no mundo. Juntamente com a revolução verde, ele contribuiu para elevar a produção dos cereais nas décadas posteriores a 1950. Esse produto é uma auxina sintética que pode ser utilizada como regulador do crescimento vegetal ou, ainda, como herbicida para o controle de espécies daninhas dicotiledôneas. Várias espécies infestantes dicotiledôneas que apresentam dificuldade de controle com outros herbicidas são suscetíveis ao 2,4-D. Contudo, a utilização desse herbicida fica restrita pela falta de seletividade em algumas culturas agrícolas. Nas últimas décadas, a descoberta de genes relacionados à tolerância ao 2,4-D em bactérias encontradas no solo e a sua transferência para culturas possibilitaram o desenvolvimento de linhagens tolerantes ao produto. Os objetivos desta revisão de literatura foram apresentar os genes e a atividade das enzimas responsáveis pela tolerância ao herbicida 2,4-D; ilustrar os mecanismos envolvidos na seletividade ao 2,4-D e a outros herbicidas; e equacionar algumas implicações para o manejo de plantas daninhas. O primeiro gene de tolerância ao 2,4-D descoberto foi o tfdA, encontrado no plasmídeo pJP4 da bactéria Cupriavidus necator. Este gene codifica a enzima 2,4-D/oxoglutarato dioxigenase, a qual realiza a conversão do 2,4-D em 2,4-diclorofenol e glioxilato. No final da década de 1980, foi realizada a primeira inserção do gene tfdA em plantas de Nicotiana tabacum, mediada por Agrobacterium tumefaciens. Isso conferiu tolerância de plantas de fumo ao 2,4-D. Resultados similares foram obtidos com inserções posteriores deste gene em plantas de Gossypium hirsutum, Brassica juncea e Vitis vinifera. Com a continuidade dos estudos de bactérias de solo, identificaram-se outros dois genes: o gene rdpA de Sphingobium herbicidivorans MH, que codifica a enzima ariloxialcanoato dioxigenase-1 (AAD-1); e o sdpA de Delftia acidovorans MC1, que codifica a enzima ariloxialcanoato dioxigenase-1(AAD-12). Essas duas enzimas são similares, mas têm cinética enzimática diferenciada e são capazes de degradar o 2,4-D e outros herbicidas. A enzima AAD-1 degrada o 2,4-D e, surpreendentemente, alguns herbicidas inibidores da acetil-CoA carboxilase (ACCase) do grupo dos ariloxifenoxipropionatos (FOPs). A enzima AAD-12 apresenta alta afinidade de ligação com os auxínicos 2,4-D, MCPA, triclopyr e fluroxypyr. Atualmente os genes que codificam estas enzimas estão sendo utilizados para o desenvolvimento de cultivares de soja, algodão e milho tolerantes ao 2,4-D e FOPs. Plantas de soja com o transgene sdpA se mostraram tolerantes ao 2,4-D. Plantas de milho contendo o gene rdpA também são tolerantes aos herbicidas FOPs. Trabalhos realizados com as espécies daninhas Conyza bonariensis, Conyza canadensis e Amaranthus palmeri resistentes ao herbicida glyphosate têm mostrado controle adequado com o 2,4-D. Portanto, os genes sdpA e rdpA são bons candidatos no desenvolvimento de culturas tolerantes ao 2,4-D e deverão ampliar as opções de controle de espécies daninhas de difícil manejo com outros herbicidas.

Terapia fotodinâmica em microorganismos cariogênicos: estudo in vitro

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Rhizodeposits of Trifolium pratense and Lolium perenne: Their comparative effects on 2,4-D mineralization in two contrasting soils

Rhizosphere enhanced biodegradation of organic pollutants has been reported frequently and a stimulatory role for specific components of rhizodeposits postulated. As rhizodeposit composition is a function of plant species and soil type, we compared the effect of Lolium perenne and Trifolium pratense grown in two different soils (a sandy silt loam: pH 4, 2.8% OC, no previous 2,4-D exposure and a silt loam: pH 6.5, 4.3% OC, previous 2,4-D exposure) on the mineralization of the herbicide 2,4-D (2,4-dichlorophenoxyacetic acid). We investigated the relationship of mineralization kinetics to dehydrogenase activity, most probable number of 2,4-D degraders (MPN2,4-D) and 2,4-D degrader composition (using sequence analysis of the gene encoding alpha-ketoglutarate/2,4-D dioxygenase (tfdA)). There were significant (P < 0.01) plant-soil interaction effects on MPN2,4-D and 2,4-D mineralization kinetics (e.g. T pratense rhizodeposits enhanced the maximum mineralization rate by 30% in the acid sandy silt loam soil, but not in the neutral silt loam soil). Differences in mineralization kinetics could not be ascribed to 2,4-D degrader composition as both soils had tfdA sequences which clustered with tfdAs representative of two distinct classes of 2,4-D degrader: canonical R. eutropha JMP134-like and oligotrophic alpha-proteobacterial-like. Other explanations for the differential rhizodeposit effect between soils and plants (e.g. nutrient competition effects) are discussed. Our findings stress that complexity of soil-plant-microbe interactions in the rhizosphere make the occurrence and extent of rhizosphere-enhanced xenobiotic degradation difficult to predict.