Genetic Diversity of the Plankton Community and Its Relation to Taxonomic Composition and Environmental Factors in Lake Xiliang

Genetic diversity of the plankton community in Lake Xiliang was depicted by polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) fingerprinting. Seventy-seven bands (33 of 16S rDNA and 44 of 18S rDNA) were detected, sixty-two planktonic taxa were identified in six sample stations in November 2007. The most common taxa were Ceratium hirundinella, Bdelloidea, Keratella cochlearis, Polyarthra trigla, and copepod nauplii. Based on environmental factors, taxonomic composition, and PCR-DGGE fingerprinting, unweighted pair-group method using arithmetic averages clustering and principal components analysis were used to analyze habitat similarities. There was distinct spatial heterogeneity in Lake Xiliang, and the genetic diversity of the plankton community was closely related to taxonomic composition and environmental factors.

(Table 2) Taxonomic composition of diatoms from bottom deposits of the Kronotsky Bay

Eocene diatom and silicoflagellate complexes from deposits of the Kronotsky Bay are presented. Pro tempore they are the most ancient finds of fossil phytoplankton with silica skeletons in the Northwest Pacific. More than 130 diatom species belonging to 59 genera and 24 silicoflagellate species belonging to 5 genera have been determined. Three Middle Eocene complexes (of the Lisitzinia kanayai, Lisitzinia inconspicua var. trilobata, and Praecymatosira monomembranaceae zones) and one presumably Middle-Late Eocene complex (of the zone with Rylandsia conniventa) of diatoms have been identified. For the first time a large silicoflagellate complex attributable to the Dictyocha hexacantha zone is presented. It is assumed that the complexes formed mainly in bathyal conditions at relatively high (close to sub-tropical) temperatures of surface waters.

(Table 2) Taxonomic composition of diatoms in dredged samples from the island-side slope of the Kuril-Kamchatka Trench

Studies of diatoms from dredge samples collected on the island slope of the Kuril-Kamchatka Trench have allowed to recognize well-preserved marine diatom assemblages corresponding to assemblages of the followed Oligocene zones: Rhizosolenia oligocaenica (subzone ''a'', 33.6-31 Ma), Cavitatus rectus (29.6-28.2 Ma), and Rocella gelida (28.2-24.0 Ma) as identified in the North Pacific zonal scale. Description of these assemblages and their complete taxonomic composition are presented. Diversity of species together with abundance and degree of preservation of diatoms and accompanying siliceous microorganisms suggests their autochtonous origin and favorable conditions of their development. Assemblages of the Early Oligocene zones Rhizosolenia oligocaenica and Cavitatus rectus recognized in sediments of the outer zone of the Lesser Kuril Ridge (submarine slope of the Shikotan Island) and on the Vityaz' submarine ridge were most probably formed under conditions of a vast shelf, while assemblage of the Late Oligocene zone Rocella gelida encountered only in the region of the Lesser Kuril Ridge formed under more deep-water conditions, presumably, over an island slope. Deepening of the basin in the region of the outer zone of the Lesser Kuril Ridge in Late Oligocene probably reflects one of stages of evolution of the Kuril-Kamchatka Trench.

Quantitative composition and distribution of the macrobenthic invertebrate fauna of the Continental Shelf ecosystems of the Northeastern United States

From the mid-1950's to the mid-1960's a series of quantitative surveys of the macrobenthic invertebrate fauna were conducted in the offshore New England region (Maine to Long Island, New York). The surveys were designed to 1) obtain measures of macrobenthic standing crop expressed in terms of density and biomass; 2) determine the taxonomic composition of the fauna (ca. 567 species); 3) map the general features of macrobenthic distribution; and 4) evaluate the fauna's relationships to water depth, bottom type, temperature range, and sediment organic carbon content. A total of 1,076 samples, ranging from 3 to 3,974 m in depth, were obtained and analyzed. The aggregate macrobenthic fauna consists of 44 major taxonomic groups (phyla, classes, orders). A striking fact is that only five of those groups (belonging to four phyla) account for over 80% of both total biomass and number of individuals of the macrobenthos. The five dominant groups are Bivalvia, Annelida, Amphipoda, Echninoidea, and Holothuroidea. Other salient features pertaining to the macrobenthos of the region are the following: substantial differences in quantity exist among different geographic subareas within the region, but with a general trend that both density and biomass increase from northeast to southwest; both density and biomass decrease with increasing depth; the composition of the bottom sediments significantly influences both the kind and quantity of macrobenthic invertebrates, the largest quantities of both measures of abundance occurring in the coarser grained sediments and diminishing with decreasing particle size; areas with marked seasonal changes in water temperature support an abundant and diverse fauna, whereas a uniform temperature regime is associated with a sparse, less diverse fauna; and no detectable trends are evident in the quantitative composition of the macrobenthos in relation to sediment organic carbon content. (PDF file contains 246 pages.)

Macrofaunal abundance and composition on the West Antarctic Peninsula continental shelf: Evidence for a sediment `food bank` and similarities to deep-sea habitats

To assess the impact and fate of the summer phytoplankton bloom on Antarctic benthos, we evaluated temporal and spatial patterns in macrofaunal abundance and taxonomic composition along a transect crossing the West Antarctic Peninsula (WAP) continental shelf As part of the FOODBANCS project, we sampled three sites at 550-625 m depths during five cruises occurring in November 1999, February-March 2000, June 2000, October 2000 and March 2001. We used a combination of megacore and box-core samplers to take 81 samples, and collected over 30,000 macrofaunal individuals, one of the largest sampling efforts on the Antarctic shelf to date. Comparison of the two sampling methodologies (box core and megacore) indicates similar macrofaunal densities, but with significant differences in taxonomic composition, a reflection of the different spatial scales of sampling. Macrorfaunal abundances on the WAP shelf were relatively high compared to other Antarctic shelf settings. At two of the three sampling sites, macrofaunal abundance remained constant throughout the year, which is consistent with the presence of a sediment `food bank`. Differences were observed in taxonomic composition at the site closest to the coast (Station A), driven by higher abundances of subsurface-deposit feeders. A significant temporal response was observed in the ampharetid polychaetes at Station A, with an abundance peak in the late fall post-bloom period; this may have resulted from juvenile recruitment during the summer bloom. Familial composition of macrofaunal polychaetes on the WAP shelf is more closely related to deep-sea abyssal fauna than to other shelf regions, and we hypothesize that this is a result of both local ecological conditions (low temperatures) and a reflection of historical processes such as extinctions on the Antarctic shelf during previous glacial maxima followed by recolonization from the deep sea. (C) 2008 Elsevier Ltd. All rights reserved.

Macroalgal composition and its association with local hydrodynamics in the Laje de Santos Marine State Park, southwestern Atlantic, São Paulo, Brazil

The Laje de Santos Marine State Park (LSMSP), located in southeastern Brazil, is the only marine park in Sao Paulo State. This conservation unit has been established as a protected area of high biological diversity. Despite its importance for the conservation of the marine biota, little is known about the park's seaweed flora. The objectives of this study were as follows: to furnish increased knowledge of the composition of the macroalgae in the Park area; to relate the area's macroalgal composition to the presence of an important water mass in the region, the South Atlantic Central Water (SACW); and to investigate the possible influence of the Port of Santos on the composition of the macroalgae of the LSMSP. This study registered 31 new records for the LSMSP, 11 for Sao Paulo State, four for Brazil, one for the western Atlantic and one for the South Atlantic Ocean, in addition to the possible occurrence of one new species of Osmundea (Rhodomelaceae) and one new genus belonging to Ceramiaceae. The taxonomic composition of the macroalgae had a direct correlation with the arrival of the SACW in the summer-fall season. The SACW generated a strong thermocline and increased the supply of nutrients in the water column. Hydrodynamic and dispersion modeling analyses suggested that the Port of Santos influenced the composition of the LSMSP phycoflora.

Macroalgal composition and its association with local hydrodynamics in the Laje de Santos Marine State Park, southwestern Atlantic, São Paulo, Brazil

The Laje de Santos Marine State Park (LSMSP), located in southeastern Brazil, is the only marine park in São Paulo State. This conservation unit has been established as a protected area of high biological diversity. Despite its importance for the conservation of the marine biota, little is known about the park's seaweed flora. The objectives of this study were as follows: to furnish increased knowledge of the composition of the macroalgae in the Park area; to relate the area's macroalgal composition to the presence of an important water mass in the region, the South Atlantic Central Water (SACW); and to investigate the possible influence of the Port of Santos on the composition of the macroalgae of the LSMSP. This study registered 31 new records for the LSMSP, 11 for São Paulo State, four for Brazil, one for the western Atlantic and one for the South Atlantic Ocean, in addition to the possible occurrence of one new species of Osmundea (Rhodomelaceae) and one new genus belonging to Ceramiaceae. The taxonomic composition of the macroalgae had a direct correlation with the arrival of the SACW in the summer-fall season. The SACW generated a strong thermocline and increased the supply of nutrients in the water column. Hydrodynamic and dispersion modeling analyses suggested that the Port of Santos influenced the composition of the LSMSP phycoflora.

(Table 2) Species composition of agglutinated foraminifers from the abyssal zone of the Pacific Ocean

The quantitative study of distribution and taxonomic composition of recent living and dead (without plasma) benthic foraminifers revealed three foraminiferal assemblages in bottom sediments of the Pacific Ocean at depths of 3350 to 4981 m. The assemblage dominated by epibenthic Lagenammina difflugiformis, Reophax dentaliniformis, and Saccorhiza ramose occupies slopes of underwater hills. The assemblage with a high share of infaunal Cribrostomoides subglobosum, C. nitidum, and Ammobaculites agglutinans is registered on an abyssal plateau. The assemblage with a significant proportion of large Astrorhiza and Reophax species, which are characterized by active way of life, populates gentle slopes and narrow depressions with potentially strong bottom currents.

Mesocosm experiment on warming and acidification effects on phytoplankton composition and cell size

While the isolated responses of marine phytoplankton to climate warming and to ocean acidification have been studies intensively, studies on the combined effect of both aspects of Global Change are still scarce. Therefore, we performed a mesocosm experiment with a factorial combination of temperature (9 and 15°C) and pCO2 (560 ppm and 1400 ppm) with a natural autumn plankton community from the western Baltic Sea. Temporal trajectories of total biomass and of the biomass of the most important higher taxa followed similar patterns in all treatments. When averaging over the entire time course, phytoplankton biomass decreased with warming and increased with CO2 under warm conditions. The contribution of the two dominant higher phytoplankton taxa (diatoms and cryptophytes) and of the 4 most important species (3 diatoms, 1 cryptophyte) did not respond to the experimental treatments. Taxonomic composition of phytoplankton showed only responses at the level of subdominant and rare species. Phytoplankton cell sizes increased with CO2 addition and decreased with warming. Both effects were stronger for larger species. Warming effects were stronger than CO2 effects and tended to counteract each other. Phytoplankton communities without calcifying species and exposed to short-term variation of COO2 seem to be rather resistant to ocean acidification.

Diversidade, diferenciação e biogeografia de pequenos mamíferos não-voadores na Mata Atlântica ao norte do rio São Francisco Centro de Endemismo Pernambuco

As florestas tropicais brasileiras (Amazônia e a Mata Atlântica) possuem alta diversidade de espécies e atualmente estão separadas por um cinturão de vegetação aberta. Parte deste cinturão é ocupada pela Caatinga, onde se encontram os Brejos de Altitude, testemunhos das conexões históricas entre a Mata Atlântica e a Amazônia. O Centro de Endemismos Pernambuco (CEPE) é a unidade biogeográfica que compõe a Mata Atlântica ao norte do rio São Francisco e contém diversos táxons endêmicos. Esta região apresenta uma mastofauna compartilhada com a Amazônia, devido às conexões existentes durante o Cenozóico. A presença do rio São Francisco em seu limite sul pode atuar como barreira ao fluxo gênico e explicar os endemismos encontrados no CEPE. Contrastando com sua situação peculiar, a mastofauna do CEPE ainda carece de estudos aprofundados sobre a identificação de suas espécies, padrões geográficos e relações filogenéticas. Revisões recentes têm identificado espécies diferentes ao norte e ao sul do rio São Francisco, mas poucos trabalhos têm proposto hipóteses biogeográficas para o CEPE. Para ampliar o conhecimento sobre a identidade e distribuição geográfica dos pequenos mamíferos do CEPE e sua estrutura filogeográfica, foram realizados levantamentos de espécies e análises de diversidade genética e morfométrica para algumas espécies. Os levantamentos consistiram de visitas às coleções científicas a fim de identificar as espécies ocorrentes no CEPE e excursões de coleta com 5 a 17 noites consecutivas em 12 localidades ao longo do CEPE, que totalizaram 64691 armadilhas noites e resultaram na coleta de 476 exemplares de 31 espécies. As espécies foram identificadas com base na morfologia externa e craniana e por análises citogenéticas. Para investigar a biogeografia do CEPE, análises de genética de populações, filogeográficas e morfométricas foram realizadas para os marsupiais Caluromys philander, Didelphis aurita, Marmosa murina, Metachirus nudicaudatus e os roedores Akodon cursor, Oecomys catherinae e Rhipidomys mastacalis para avaliar a existência de diferenciação nas populações do CEPE e suas relações com as linhagens Amazônicas e Atlânticas. Estes resultados mostraram que a diversificação dos pequenos mamíferos do CEPE ocorreu tanto no Terciário quanto no Quaternário. Algumas populações, como em Caluromys philander e Oecomys catherinae, mostraram afinidades com linhagens amazônicas, enquanto outras, como em Metachirus nudicaudatus e Rhipidomys mastacalis, apresentaram afinidades com linhagens atlânticas. Os pequenos mamíferos do CEPE apresentaram diferenciação em relação às suas linhagens irmãs, com algumas linhagens podendo tratar-se de espécies ainda não descritas (e.g. Didelphis aff. aurita e Rhipidomys aff. mastacalis). Esta diferenciação provavelmente foi causada pelos eventos cíclicos de flutuações climáticas que provocaram elevações no nível do mar e retração das florestas tropicais, isolando as populações do CEPE. Por fim, para auxiliar na identificação das espécies em novas coletas, de suas distribuições geográficas e de suas características citogenéticas e ecológicas, foi elaborado um guia reunindo todas as informações disponíveis sobre as espécies de pequenos mamíferos do CEPE.

Impacto do uso do solo no crescimento, limitação nutricional, taxonomia e variação estequiométrica do perifíton em rios tropicais

Os rios em todo o mundo estão ameaçados através da alteração do uso e cobertura do solo. Nesse contexto, o perifíton é sugerido como indicador biológico devido ao seu ciclo de vida curto, à comunidade autótrofa e à riqueza de espécies. O objetivo deste estudo foi identificar mudanças em parâmetros estruturais e funcionais da assembleia perifitica em relação aos diferentes tipos de cobertura do solo (pristino, perturbação intermediária e perturbado); em especial na limitação nutricional, crescimento e acúmulo, composição taxonômica e estequiometria da comunidade. O trabalho foi desenvolvido em três rios (Santa Maria, Itaperiti, Anil) da bacia Guapi-Macacu, RJ, Brasil. A limitação nutricional foi acessada através de Substratos Difusores de Nutrientes alocados in situ; estes substratos consistem em potes com agar-agar, enriquecidos com nutrientes (N, P, N+P), ou não (controle), que difundem até o filtro, servindo de substrato para o crescimento perifítico. Ainda, o crescimento foi acessado através da colonização de azulejos, amostrados em datas diferentes; na última data, a amostragem também foi feita para a verificação da composição taxonômica e estequiométrica da assembleia. Os resultados mostraram que a comunidade perifítica é limitada primariamente por luz nos pontos pristinos; já nos pontos perturbados, há limitação por nitrogênio ou fósforo, dependendo do uso do solo predominante agricultura com maior aporte de nitrogênio, causando limitação por fósforo, e pecuária com maior aporte de fósforo, causando limitação por nitrogênio. Os trechos perturbados apresentaram maior biomassa perifítica em termos de clorofila a; além disso, também mostraram as maiores taxas de crescimento da comunidade. Também, houve mudanças na composição taxonômica da comunidade no gradiente de perturbação, com o aumento de gêneros tolerantes à poluição e diminuição de gêneros não tolerantes e da diversidade e a equitabilidade. A intensidade luminosa foi determinante na presença dos táxons, e a concentração de fosfato, nas suas abundâncias. Por fim, as razões estequiométricas - C:N, C:P and N:P - diminuíram em função da concentração de nutrientes na água, indicando o potencial de remoção de nutrientes em córregos poluídos. O presente trabalho foi inovador na área limnológica devido à abordagem estequiométrica em conjunto com o grande número de outras variáveis biológicas. Em tempo, a dificuldade de separação dos efeitos das variáveis ambientais neste estudo in situ faz com que seja sugerido o uso de experimentos controlados em mesocosmos posteriormente