Chlorophyll a spatial inference using artificial neural network from multispectral images and in situ measurements

Considering the importance of monitoring the water quality parameters, remote sensing is a practicable alternative to limnological variables detection, which interacts with electromagnetic radiation, called optically active components (OAC). Among these, the phytoplankton pigment chlorophyll a is the most representative pigment of photosynthetic activity in all classes of algae. In this sense, this work aims to develop a method of spatial inference of chlorophyll a concentration using Artificial Neural Networks (ANN). To achieve this purpose, a multispectral image and fluorometric measurements were used as input data. The multispectral image was processed and the net training and validation dataset were carefully chosen. From this, the neural net architecture and its parameters were defined to model the variable of interest. In the end of training phase, the trained network was applied to the image and a qualitative analysis was done. Thus, it was noticed that the integration of fluorometric and multispectral data provided good results in the chlorophyll a inference, when combined in a structure of artificial neural networks.

Employing Distances in Design-based Spatial Estimation

In the last couple of decades we assisted to a reappraisal of spatial design-based techniques. Usually the spatial information regarding the spatial location of the individuals of a population has been used to develop efficient sampling designs. This thesis aims at offering a new technique for both inference on individual values and global population values able to employ the spatial information available before sampling at estimation level by rewriting a deterministic interpolator under a design-based framework. The achieved point estimator of the individual values is treated both in the case of finite spatial populations and continuous spatial domains, while the theory on the estimator of the population global value covers the finite population case only. A fairly broad simulation study compares the results of the point estimator with the simple random sampling without replacement estimator in predictive form and the kriging, which is the benchmark technique for inference on spatial data. The Monte Carlo experiment is carried out on populations generated according to different superpopulation methods in order to manage different aspects of the spatial structure. The simulation outcomes point out that the proposed point estimator has almost the same behaviour as the kriging predictor regardless of the parameters adopted for generating the populations, especially for low sampling fractions. Moreover, the use of the spatial information improves substantially design-based spatial inference on individual values.

Comparing the performance of geostatistical models with additional information from covariates for sewage plume characterization

In this work, kriging with covariates is used to model and map the spatial distribution of salinity measurements gathered by an autonomous underwater vehicle in a sea outfall monitoring campaign aiming to distinguish the effluent plume from the receiving waters and characterize its spatial variability in the vicinity of the discharge. Four different geostatistical linear models for salinity were assumed, where the distance to diffuser, the west-east positioning, and the south-north positioning were used as covariates. Sample variograms were fitted by the Mat`ern models using weighted least squares and maximum likelihood estimation methods as a way to detect eventual discrepancies. Typically, the maximum likelihood method estimated very low ranges which have limited the kriging process. So, at least for these data sets, weighted least squares showed to be the most appropriate estimation method for variogram fitting. The kriged maps show clearly the spatial variation of salinity, and it is possible to identify the effluent plume in the area studied. The results obtained show some guidelines for sewage monitoring if a geostatistical analysis of the data is in mind. It is important to treat properly the existence of anomalous values and to adopt a sampling strategy that includes transects parallel and perpendicular to the effluent dispersion.

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Kirjallisuusarvostelu

Mapeamento do biovolume de plantas aquáticas submersas a partir de dados hidroacústicos e imagem multiespectral de alta resolução

As plantas aquáticas têm papel fundamental no equilíbrio dos ecossistemas, porém seu crescimento desequilibrado pode obstruir canais, represas e reservatórios e afetar múltiplos usos da água. em relação a plantas aquáticas submersas, a utilização de medidas de controle torna-se mais complexa, em face da dificuldade em mapear e quantificar volumetricamente as áreas colonizadas. Nessas situações, considera-se que o uso de dados hidroacústicos possibilite o mapeamento e a mensuração dessas áreas, auxiliando na elaboração de propostas de manejo sustentáveis desse tipo de vegetação aquática. Assim, o presente trabalho utilizou dados acústicos e a técnica de krigagem para realizar a inferência espacial do biovolume de plantas aquáticas submersas. Os dados foram obtidos em três levantamentos ecobatimétricos realizados em uma área de estudos localizada no rio Paraná, caracterizada por condições favoráveis para proliferação de vegetação aquática submersa e dificuldade de navegação. Para delimitar as áreas caracterizadas pela presença de plantas aquáticas submersas, utilizou-se uma imagem multiespectral de alta resolução espacial World View-2. O mapeamento do biovolume das plantas aquáticas submersas nas áreas de ocorrência do fenômeno foi realizado a partir da inferência do biovolume por krigagem e do fatiamento dos valores inferidos em intervalos de 15%. A partir do mapa gerado, foi possível identificar os locais de maior concentração de macrófitas submersas, com predominância de valores de biovolume entre 15-30% e 30-45%, confirmando a viabilidade da utilização da krigagem na inferência espacial do biovolume, a partir de medidas ecobatimétricas georreferenciadas e com o suporte de imagem de alta resolução espacial.

Submerged macrophytes height estimation by echosounder data sample

Traditional methods of submerged aquatic vegetation (SAV) survey last long and then, they are high cost. Optical remote sensing is an alternative, but it has some limitations in the aquatic environment. The use of echosounder techniques is efficient to detect submerged targets. Therefore, the aim of this study is to evaluate different kinds of interpolation approach applied on SAV sample data collected by echosounder. This study case was performed in a region of Uberaba River - Brazil. The interpolation methods evaluated in this work follow: Nearest Neighbor, Weighted Average, Triangular Irregular Network (TIN) and ordinary kriging. Better results were carried out with kriging interpolation. Thus, it is recommend the use of geostatistics for spatial inference of SAV from sample data surveyed with echosounder techniques. © 2012 IEEE.

Inferência espacial para mapeamento de macrófitas submersas: estudo de caso

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Inferência espacial de clorofila a por redes neurais artificiais aplicadas a imagens multiespectrais e medidas tomadas in situ

Pós-graduação em Ciências Cartográficas - FCT

Inferência espacial de cianobactérias a partir da fluorescência in vivo do pigmento ficocianina

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Análise geoestatística para geração de superfícies a partir de dados de clorofila-a adquiridos em transectos

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

What drives invasibility? A multi-model inference test and spatial modelling of alien plant species richness patterns in northern Portugal

Understanding and anticipating biological invasions can focus either on traits that favour species invasiveness or on features of the receiving communities, habitats or landscapes that promote their invasibility. Here, we address invasibility at the regional scale, testing whether some habitats and landscapes are more invasible than others by fitting models that relate alien plant species richness to various environmental predictors. We use a multi-model information-theoretic approach to assess invasibility by modelling spatial and ecological patterns of alien invasion in landscape mosaics and testing competing hypotheses of environmental factors that may control invasibility. Because invasibility may be mediated by particular characteristics of invasiveness, we classified alien species according to their C-S-R plant strategies. We illustrate this approach with a set of 86 alien species in Northern Portugal. We first focus on predictors influencing species richness and expressing invasibility and then evaluate whether distinct plant strategies respond to the same or different groups of environmental predictors. We confirmed climate as a primary determinant of alien invasions and as a primary environmental gradient determining landscape invasibility. The effects of secondary gradients were detected only when the area was sub-sampled according to predictions based on the primary gradient. Then, multiple predictor types influenced patterns of alien species richness, with some types (landscape composition, topography and fire regime) prevailing over others. Alien species richness responded most strongly to extreme land management regimes, suggesting that intermediate disturbance induces biotic resistance by favouring native species richness. Land-use intensification facilitated alien invasion, whereas conservation areas hosted few invaders, highlighting the importance of ecosystem stability in preventing invasions. Plants with different strategies exhibited different responses to environmental gradients, particularly when the variations of the primary gradient were narrowed by sub-sampling. Such differential responses of plant strategies suggest using distinct control and eradication approaches for different areas and alien plant groups.

How large is congressional dependence in agriculture. Bayesian inference about ‘scale’ and ‘scope’ in measuring a spatial externality

The political economy literature on agriculture emphasizes influence over political outcomes via lobbying conduits in general, political action committee contributions in particular and the pervasive view that political preferences with respect to agricultural issues are inherently geographic. In this context, ‘interdependence’ in Congressional vote behaviour manifests itself in two dimensions. One dimension is the intensity by which neighboring vote propensities influence one another and the second is the geographic extent of voter influence. We estimate these facets of dependence using data on a Congressional vote on the 2001 Farm Bill using routine Markov chain Monte Carlo procedures and Bayesian model averaging, in particular. In so doing, we develop a novel procedure to examine both the reliability and the consequences of different model representations for measuring both the ‘scale’ and the ‘scope’ of spatial (geographic) co-relations in voting behaviour.

Strong inference from transect sign surveys : combining spatial autocorrelation and misclassification occupancy models to quantify the detectability of a recovering carnivore

Funding — Forest Enterprise Scotland and the University of Aberdeen provided funding for the project. The Carnegie Trust supported the lead author, E. McHenry, in this research through the award of a tuition fees bursary.

Where is the economics in spatial econometrics?

Spatial econometrics has been criticized by some economists because some model specifications have been driven by data-analytic considerations rather than having a firm foundation in economic theory. In particular this applies to the so-called W matrix, which is integral to the structure of endogenous and exogenous spatial lags, and to spatial error processes, and which are almost the sine qua non of spatial econometrics. Moreover it has been suggested that the significance of a spatially lagged dependent variable involving W may be misleading, since it may be simply picking up the effects of omitted spatially dependent variables, incorrectly suggesting the existence of a spillover mechanism. In this paper we review the theoretical and empirical rationale for network dependence and spatial externalities as embodied in spatially lagged variables, arguing that failing to acknowledge their presence at least leads to biased inference, can be a cause of inconsistent estimation, and leads to an incorrect understanding of true causal processes.

Multilevel Modelling with Spatial Effects

In multilevel modelling, interest in modeling the nested structure of hierarchical data has been accompanied by increasing attention to different forms of spatial interactions across different levels of the hierarchy. Neglecting such interactions is likely to create problems of inference, which typically assumes independence. In this paper we review approaches to multilevel modelling with spatial effects, and attempt to connect the two literatures, discussing the advantages and limitations of various approaches.