Community structures of soil animals and survival of land snails on an island of the Ogasawara Archipelago

On Chichijima, one of the Ogasawara (Bonin) Islands located in the Western Pacific Ocean, land snails have declined, the suggested cause being predation pressure by an invasive flatworm (Platydemus manokwari). Soil fauna were investigated in areas where the snail survives, and where it has become extinct. Much of the fauna, dominated by introduced earthworms and ants, was undiminished, however, one undescribed but endemic carabid (Badister sp.), which selectively feeds on land snails, was absent in snail-extinct areas. The invasive flatworm P. manokwari has been reported to feed also on the carcasses of earthworms, as well as on live snails, and is therefore expected to occur in most parts of Chichijima Island. Among other groups, the density of isopods (also dominated by exotic species) was very low, in comparison with the reported ones 30 years ago. Community structure is currently reflected by dominance of earthworms and ants, decline of endemic isopods, and a high frequency of introduced or alien species.

DNA barcodes for soil animal taxonomy

The biodiversity of soil communities remains very poorly known and understood. Soil biological sciences are strongly affected by the taxonomic crisis, and most groups of animals in that biota suffer from a strong taxonomic impediment. The objective of this work was to investigate how DNA barcoding - a novel method using a microgenomic tag for species identification and discrimination - permits better evaluation of the taxonomy of soil biota. A total of 1,152 barcode sequences were analyzed for two major groups of animals, collembolans and earthworms, which presented broad taxonomic and geographic sampling. Besides strongly reflecting the taxonomic impediment for both groups, with a large number of species-level divergent lineages remaining unnamed so far, the results also highlight a high level (15%) of cryptic diversity within known species of both earthworms and collembolans. These results are supportive of recent local studies using a similar approach. Within an impeded taxonomic system for soil animals, DNA-assisted identification tools can facilitate and improve biodiversity exploration and description. DNA-barcoding campaigns are rapidly developing in soil animals and the community of soil biologists is urged to embrace these methods.

Why should we care about soil fauna?

The reasons why we care about soil fauna are related to their intrinsic, utilitarian and functional values. The intrinsic values embrace aesthetic or moral reasons for conserving below-ground biodiversity. Unfortunately, the protection of soil invertebrates has rarely been a criterion for avoiding changes in land use and management. Utilitarian, or direct use values, have been investigated more extensively for fungi, bacteria and marine invertebrates than for soil fauna. However, some traditional remedies, novel enzymes and pharmaceutical compounds have been derived from earthworms, termites and other groups, and gut symbionts may provide microbial strains with interesting properties for biotechnology. The functional importance of soil invertebrates in ecosystem processes has been a major focus of research in recent decades. It is suggested herein that it is rarely possible to identify the role of soil invertebrates as rate determinants of soil processes at plot and ecosystem scales of hectares and above because other biophysical controls override their effects. There are situations, however, where the activities of functional groups of soil animals, even of species, are synchronised in space or time by plant events, resource inputs, seasonality or other perturbations to the system, and their emergent effects are detectable as higher order controls.

Soil characteristics and Collembola and Acari abundance in control and warming plots at Abisco Research Station

Extreme weather events can have negative impacts on species survival and community structure when surpassing lethal thresholds. Extreme winter warming events in the Arctic rapidly melt snow and expose ecosystems to unseasonably warm air (2-10 °C for 2-14 days), but returning to cold winter climate exposes the ecosystem to lower temperatures by the loss of insulating snow. Soil animals, which play an integral part in soil processes, may be very susceptible to such events depending on the intensity of soil warming and low temperatures following these events. We simulated week-long extreme winter warming events - using infrared heating lamps, alone or with soil warming cables - for two consecutive years in a sub-Arctic dwarf shrub heathland. Minimum temperatures were lower and freeze-thaw cycles were 2-11 times more frequent in treatment plots compared with control plots. Following the second event, Acari populations decreased by 39%; primarily driven by declines of Prostigmata (69%) and the Mesostigmatic nymphs (74%). A community-weighted vertical stratification shift occurred from smaller soil dwelling (eu-edaphic) Collembola species dominance to larger litter dwelling (hemi-edaphic) species dominance in the canopy-with-soil warming plots compared with controls. The most susceptible groups to these winter warming events were the smallest individuals (Prostigmata and eu-edaphic Collembola). This was not apparent from abundance data at the Collembola taxon level, indicating that life forms and species traits play a major role in community assembly following extreme events. The observed shift in soil community can cascade down to the micro-flora affecting plant productivity and mineralization rates. Short-term extreme weather events have the potential to shift community composition through trait composition with potentially large consequences for ecosystem development.

Soil biology as related to land use practices : proceedings of the VII International Soil Zoology Colloquium of the International Society of Soil Science (ISSS) /

Item 473-B-1

Studies of soil fauna with special reference to the Collembola.

Mode of access: Internet.

Soil biology primer /

"August 1999"--P. [4] of cover

Micobacteriose não tuberculosa pulmonar em hospital de referência no Estado do Pará: espécies mais frequentes, apresentação radiológica e evolução clínica

As micobactérias não tuberculosas (MNT) estão amplamente presentes no ambiente, tendo sido isoladas em águas naturais, sistemas de distribuição de água, solo e animais. Caracterizam-se pela presença de ácido micólico na parede celular. Em geral, são adquiridas através de inalação de gotículas de água contendo micobactérias. Podem causar formas variadas de doença como linfadenite, pulmonar, cutânea e disseminada. São patógenos oportunistas, com patogenicidade variável, que requerem defeitos na imunidade local ou sistêmica, congênitos ou adquiridos para causar doenças em humanos. Foram avaliados aspectos epidemiológicos, clínicos e radiológicos de 44 casos de micobacteriose não tuberculosa na forma pulmonar no Hospital João de Barros Barreto (HUJBB) através de estudo retrospectivo e foram tratados e acompanhados 21/44 (47,7%) pacientes durante um período de seis a dezessete meses através de estudo do tipo coorte prospectivo. Os dados mostraram um incremento de mais de 100% no número de casos a partir do ano de 2010 em relação aos anos anteriores no HUJBB. As micobactérias mais isoladas foram M. intracellulare (22,7%) e M. massiliense (20,5%). As condições mais frequentemente associadas à doença incluíram tratamento prévio para tuberculose (93,2%), bronquiectasias (59%), HIV (11,4%), asma (9,1%) e doença pulmonar obstrutiva crônica (9,1%). Não foram observadas diferenças nos aspectos radiológicos entre as espécies, exceto na análise das radiografias de tórax, onde atelectasias foram mais frequentes nos grupo M. massiliense do que no grupo de M. abscessus. A resposta ao tratamento de acordo com a análise das culturas para micobactérias mostrou que em 58,8% dos casos ocorreu negativação, persistência da positividade em 11,7% e positividade após negativação inicial em 11,7%. Durante o período de acompanhamento, a taxa de óbito foi de 17,7%. Os dados sugerem que a forma pulmonar da micobacteriose não tuberculosa tem se tornado uma doença com importância cada vez maior em nossa região. Adicionalmente, a resposta ao tratamento tem sido bastante satisfatória quando comparada à literatura. Entretanto, é necessário um seguimento desses pacientes por período mais prolongado para estabelecer o real desfecho da nossa abordagem terapêutica.

Die Entwicklung der Mesofauna eines Weinberges im nordöstlichen Rheinhessen im Vergleich zum Lennebergwald und weiteren Agrarflächen

ZusammenfassungrnrnrnDer Köderstreifentest, die Auswertung der Minicontainer und die Erfassung der Bodenlebewesen mit Hilfe der Bodenstechkerne ergeben zusammen eine gut standardisierte Methode zur Darstellung und Beurteilung der Mesofauna. Unter der Vorraussetzung gleicher abiotischer Faktoren ist es problemlos möglich, selbst unterschiedliche Standorte wie Agrarflächen, Weinberge und Waldböden vergleichend zu untersuchen.rnrnAuf den verschiedenen Versuchsflächen des Laubenheimer Weinberges gelingt es deutlich zu zeigen, wie wichtig eine naturnahe Begrünung für den Boden ist. Dies betrifft nicht nur die Entwicklung der Humusschicht und damit die Bodenlebewesen, sondern auch die Schaffung von Kapillaren und Poren, die durch schwere landwirtschaftliche Geräte im Rahmen der Bo-denverdichtung reduziert werden. Erosionserscheinungen kommen vollständig zum Stillstand. Das Ökosystem Boden sollte auch so gut wie keine Belastung durch Herbizide, Insektizide und Pestizide erfahren. Ähnliches gilt auch für agrarisch genutzte Flächen. rnrnDer Lennebergwald als Naherholungsregion von Mainz ist besonders schützenswert, da dieser durch intensiven Immissionseintrag aufgrund der Nähe zu den Autobahnen und durch die Eutrophierung über die Haustiere stark belastet wird. Die immer größere Ausdehnung des Siedlungsgebietes und die damit verbundene steigende Anzahl an Waldbesuchern, die durch Verlassen der vorgegebenen Wege den Boden zerstören, gefährden zusätzlich das Ökosystem.rnrnÜber Sinn und Zweck einer Flurbereinigung zu diskutieren ist hier nicht angebracht. Aus bo-denkundlicher Sicht ist sie nicht zu befürworten, da hiermit alle bodenbewahrenden Maßnah-men ignoriert werden. Wichtig ist es, bei den Landwirten Aufklärungsarbeit zu leisten, was bodenschonende und bodenweiterentwickelnde Bearbeitungsmethoden bedeuten. Mit Hilfe sachgemäßer Aufklärung und richtiger Umsetzung kann durch Begrünungsmaßnahmen der zum Teil sehr stark strapazierte Boden erhalten, gefördert und auf lange Sicht stabilisiert wer-den.rnrnAufgrund der festgestellten Tatsachen wurde ab 2008 auf eine flächige Dauerbegrünung um-gestellt, so dass es auch in den unbegrünten Rebzeilen zu einer Bodenverbesserung kommen kann. Mit großer Wahrscheinlichkeit dürfte diese schneller voranschreiten, da die Mesofauna von den benachbarten begrünten Rebzeilen einwandern kann. rnDie Mesofauna landwirtschaftlich genutzter Flächen und Waldgebiete kann, obwohl extrem unterschiedlich, miteinander verglichen werden.rnrnBrachflächen und Waldgebiete lassen sich aufgrund der unberührten Bodenstrukturen sogar gut miteinander vergleichen. Temperatur- und Niederschlagsverhältnisse müssen dabei über-einstimmen. Die Azidität der jeweiligen Böden gilt es zu berücksichtigen, da verschiedene Tiergruppen damit unterschiedlich umgehen. Collembolen bevorzugen neutrale Böden, wäh-rend Acari als Räuber mit den Lebewesen in sauren Böden besser zurechtkommen. Die Streu-auflage ist dabei von großer Bedeutung.rnrnIm Rahmen von Bearbeitungsmaßnahmen kommt es durch jeglichen Maschineneinsatz zu ei-ner mehr oder weniger starken Veränderung der Bodenstruktur und somit auch der darin le-benden Mesofauna. Bis sich diese erholt hat, steht meist schon die nächste Bodenbewirtschaf-tung an. Die Bodenverdichtung spielt auch eine Rolle. Bei herkömmlichem Ackerbau ist eine Fruchtfolge mit eingeschalteter Brache oder Gründüngung mit Klee oder Luzerne angebracht, um die Mesofauna nicht zu stark zu strapazieren. Organische Düngegaben leicht abbaubarer Streu sind deutlich zu bevorzugen gegenüber sehr zellulose- und ligninhaltigen Pflanzenresten. Die Einbringung von Stoppeln nach Aberntung von Getreidefeldern ist sinnvoll, solange dabei nicht zu tief in die Bodenstruktur eingegriffen wird (ZIMMER 1997).rnrnIm Rahmen der Sonderkultur Wein, bei der eine Bodenbearbeitung aus den aufgezeigten Gründen eigentlich nicht notwendig wäre, sind Dauerbegrünungsmaßnahmen generell von Nutzen: der Erosion wird vorgebeugt, die Bodenfeuchte konstant gehalten, der anfallende Mulch als Gründüngung genutzt. Dies sind alles entscheidende Faktoren, die die Meso- und Makrofauna fördern. Nur die Bodenverdichtung durch schweres Gerät, wie Schlepper und Vollernter, sind für den Boden nicht förderlich (HEISLER 1993, EHRENSBERGER 1993). Nie-derdruckreifen und Verringerung der Befahrung sind geeignete Gegenmaßnahmen. rnrnEntgegen landläufiger Winzermeinung, stellen die Pflanzen einer Begrünung eigentlich keine Konkurrenz für die Weinstöcke dar. Die Vorteile einer Begrünung sind nicht nur die Förde-rung der einheimischen Flora in ihrem standortgerechten Artenreichtum, sondern auch Ver-vielfältigung von Meso- und Makrofauna aufgrund der dadurch mehr anfallenden und ein-zuarbeitenden leicht abbaubaren Streu (GRIEBEL 1995).rn

A geographical sketch of that part of North America, called Oregon: containing an account of the Indian title;--the nature of a right of sovereignty;--the first discoveries;--climate and seasons;--face of the country and mountains--natural divisions, physical appearance and soil of each;--forests and vegetable productions;--rivers, bays; &c.; islands, &c.; animals;--the disposition of the Indians, and the number and situation of their tribes;--together with an essay on the advantages resulting from a settlement of the territory. To which is attached a new map of the country.

Mode of access: Internet.

Leptospirosis in animals and human contacts in Egypt: broad range surveillance

INTRODUCTION: Leptospirosis is a re-emerging zoonotic disease of humans and animals worldwide. The disease is caused by pathogenic species of the genus Leptospira. These organisms are maintained in nature via chronic renal infection of carrier animals, which excrete the organisms in their urine. Humans become infected through direct or indirect exposure to infected animals and their urine or through contact with contaminated water and soil. This study was conducted to investigate Leptospira infections as a re-emerging zoonosis that has been neglected in Egypt. METHODS: Samples from 1,250 animals (270 rats, 168 dogs, 625 cows, 26 buffaloes, 99 sheep, 14 horses, 26 donkeys and 22 camels), 175 human contacts and 45 water sources were collected from different governorates in Egypt. The samples were collected from different body sites and prepared for culture, PCR and the microscopic agglutination test (MAT). RESULTS: The isolation rates of Leptospira serovars were 6.9%, 11.3% and 1.1% for rats, dogs and cows, respectively, whereas the PCR results revealed respective detection rates of 24%, 11.3% and 1.1% for rats, dogs and cows. Neither the other examined animal species nor humans yielded positive results via these two techniques. Only six Leptospira serovars (Icterohaemorrhagiae, Pomona, Canicola, Grippotyphosa, Celledoni and Pyrogenes) could be isolated from rats, dogs and cows. Moreover, the seroprevalence of leptospiral antibodies among the examined humans determined using MAT was 49.7%. CONCLUSIONS: The obtained results revealed that rats, dogs and cows were the most important animal reservoirs for leptospirosis in Egypt, and the high seroprevalence among human contacts highlights the public health implications of this neglected zoonosis.

Ecology and evolution of soil nematode chemotaxis.

Plants influence the behavior of and modify community composition of soil-dwelling organisms through the exudation of organic molecules. Given the chemical complexity of the soil matrix, soil-dwelling organisms have evolved the ability to detect and respond to these cues for successful foraging. A key question is how specific these responses are and how they may evolve. Here, we review and discuss the ecology and evolution of chemotaxis of soil nematodes. Soil nematodes are a group of diverse functional and taxonomic types, which may reveal a variety of responses. We predicted that nematodes of different feeding guilds use host-specific cues for chemotaxis. However, the examination of a comprehensive nematode phylogeny revealed that distantly related nematodes, and nematodes from different feeding guilds, can exploit the same signals for positive orientation. Carbon dioxide (CO(2)), which is ubiquitous in soil and indicates biological activity, is widely used as such a cue. The use of the same signals by a variety of species and species groups suggests that parts of the chemo-sensory machinery have remained highly conserved during the radiation of nematodes. However, besides CO(2), many other chemical compounds, belonging to different chemical classes, have been shown to induce chemotaxis in nematodes. Plants surrounded by a complex nematode community, including beneficial entomopathogenic nematodes, plant-parasitic nematodes, as well as microbial feeders, are thus under diffuse selection for producing specific molecules in the rhizosphere that maximize their fitness. However, it is largely unknown how selection may operate and how belowground signaling may evolve. Given the paucity of data for certain groups of nematodes, future work is needed to better understand the evolutionary mechanisms of communication between plant roots and soil biota.

Chemokines in neuroectodermal cancers: the crucial growth signal from the soil.

Although chemokines and their receptors were initially identified as regulators of cell trafficking during inflammation and immune response, they have emerged as crucial players in all stages of tumor development, primary growth, migration, angiogenesis, and establishment as metastases in distant target organs. Neuroectodermal tumors regroup neoplasms originating from the embryonic neural crest cells, which display clinical and biological similarities. These tumors are highly malignant and rapidly progressing diseases that disseminate to similar target organs such as bone marrow, bone, liver and lungs. There is increasing evidence that interaction of several chemokine receptors with corresponding chemokine ligands are implicated in the growth and invasive characteristics of these tumors. In this review we summarize the current knowledge on the role of CXCL12 chemokine and its CXCR4 and CXCR7 receptors in the progression and survival of neuroectodermal tumors, with particular emphasis on neuroblastoma, the most typical and enigmatic neuroectodermal childhood tumor.

BRACHIARIA IN SELENIUM-CONTAMINATED SOIL UNDER SULPHUR SOURCE APPLICATIONS

ABSTRACT High contents of plant-available selenium in the soil in the form of selenate, resulting from natural or anthropogenic action, jeopardizes agricultural areas and requires research for solutions to establish or re-establish agricultural or livestock operation, avoiding the risk of poisoning of plants, animals and humans. The purpose was to evaluate sulfur sources in the form of sulfate, e.g., ammonium sulfate, calcium sulfate, ferric sulfate, in the remediation of tropical soils anthropogenically contaminated with Se under the tropical forage grass Brachiaria brizantha (Hochst. ex A. Rich.) Stapf cv. Marandu. More clayey soils are less able to supply plants with Se, which influences the effects of S sources, but it was found that high soil Se concentrations negatively affected forage biomass production, regardless of the soil. Of the tested S sources, the highly soluble ammonium sulfate and ferric sulfate reduced plant Se uptake and raised the available sulfur content in the soil.