The status of the invasive sea squirts and barnacles found in the marinas and ports of Algarve, Southern Portugal

Dissertação de mestrado, Biologia Marinha, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Gene expression in sea urchin development: Study of {\it LpS1\/} gene regulation and cloning and characterization of the {\it SpKrox}-{\it 1\/} gene

Cell differentiation are associated with activation of cell lineage-specific genes. The $LpS{\it 1}\beta$ gene of Lytechinus pictus is activated at the late cleavage stage. $LpS{\it 1}\beta$ transcripts accumulate exclusively in aboral ectoderm lineages. Previous studies demonstrated two G-string DNA-elements, proximal and distal G-strings, which bind to an ectoderm-enriched nuclear factor. In order to define the cis-elements which control positive expression of the $LpS{\it 1}\beta$ gene, the regulatory region from $-$108 to +17 bp of the $LpS{\it 1}\beta$ gene promoter was characterized. The ectoderm G-string factor binds to a G/C-rich region larger than the G-string itself and the binding of the G-string factor requires sequences immediately downstream from the G-string. These downstream sequences are essential for full promoter activity. In addition, only 108 bp of $LpS{\it 1}\beta\ 5\sp\prime$ flanking DNA drives $LpS{\it 1}\beta$ gene expression in aboral ectoderm/mesenchyme cells. Therefore, for positive control of $LpS{\it 1}\beta$ gene expression, two regions of 5$\sp\prime$ flanking DNA are required: region I from base pairs $-$762 to $-$511, and region II, which includes the G/C-rich element, from base pairs $-$108 to $-$61. A mesenchyme cell repressor element is located within region I.^ DNA-binding proteins play key roles in determination of cell differentiation. The zinc finger domain is a DNA-binding domain present in many transcription factors. Based on homologies in zinc fingers, a zinc finger-encoding gene, SpKrox-1, was cloned from S. purpuratus. The putative SpKrox-1 protein has all structural characteristics of a transcription factor: four zinc fingers for DNA binding; acidic domain for transactivation; basic domain for nuclear targeting; and leucine zipper for dimerization. SpKrox-1 RNA transcripts showed a transient expression pattern which correlates largely with early embryonic development. The spatial expression of SpKrox-1 mRNA was distributed throughout the gastrula and larva ectodermal wall. However, SpKrox-1 was not expressed in pigment cells. The SpKrox-1 gene is thus a marker of a subset of SMCs or ectoderm cells. The structural features, and the transient temporal and restricted spatial expression patterns suggest that SpKrox-1 plays a role in a specific developmental event. ^

Molecular regulatory mechanisms and embryonic tissue specification in sea urchin development

To understand how a eukaryote achieves differential transcription of genes in precise spatial patterns, the molecular details of tissue specific expression of the Strongylocentrotus purpuratus Spec2a gene were investigated by functional studies of the cis-regulatory components in the upstream enhancer. Regional activation of Spec2a in the aboral ectoderm is conferred by a combination of activators and repressors. The positive regulators include previously identified SpOtx and a trans-regulatory factor binding at the CCAAT site in the Spec2a enhancer. The nuclear protein binding to the CCAAT box was determined to be the heterotrimeric CCAAT binding factor (SpCBF). SpCBF also mediates general activation in the ectoderm. The negative regulators consist of an oral ectoderm repressor (OER), an endoderm repressor (ENR), and an S. Purpuratus goosecoid homologue (SpGsc). OER functions to prevent expression in the oral ectoderm, while ENR is required to repress endoderm expression. SpGsc antagonizes the SpOtx function by competing for binding at SpOtx target genes in oral ectoderm, where it functions as an active repressor. Thus, SpOtx and SpGsc perform collectively to establish and maintain the oral-aboral axis. Finally, purification of ENR and OER proteins from sea urchin blastula stage nuclear extracts was performed using site-specific DNA-affmity chromatography. ^

An Economic Analysis of Drawing Lines in the Sea

It is shown that low dispute costs relative to expected resource rents from oceanic resources favor drawn out disputes over maritime boundaries; asymmetric dispute costs favor agreement on boundaries wanted by the low dispute cost state party; and high symmetric dispute costs favor formation of joint development zones. The fact that most maritime boundaries have not yet been drawn suggests that state parties think that resource rents that can be drawn from the oceans are high relative to dispute costs. Moreover, the recent mini-trend towards JDZs in East Asia suggests that state parties in the area have recently reassessed dispute costs as being higher than previously believed.

Calcium carbonate, biogenic opal, and organic carbon content and d15N ratios of sediments from the Bering Sea

Millennial-scale paleoceanographic changes in the Bering Sea during the last 71 kyrs were reconstructed using geochemical and isotope proxies (biogenic opal, CaCO3, and total organic carbon (TOC), nitrogen and carbon isotopes of sedimentary organic matters) and microfossil (radiolaria and foraminifera) data from two cores (PC23A and PC24A) which were collected from the northern continental slope area at intermediate water depths. Biogenic opal and TOC contents were generally high with high sedimentation rates during the last deglaciation. Laminated sediment depositions during the Early-Holocene (EH) and Bølling-Allerød (BA) were closely related with the increased primary productivity recorded by high biogenic opal and TOC contents and high d15N values. Enhanced surface-water productivity was attributed to increased nutrient supply from strengthened Bering Slope Current (BSC) and from increased amount of glacial melt-water, resulting in high C/N ratios and low d13C values, and high proportion of Rhizoplegma boreale during the last deglaciation. In contrast, low surface-water productivity during the last glacial period was due to depleted nutrient supply caused by strong stratification and to restricted phytoplankton bloom by extensive sea ice distribution under cold climates. Extensive formation of sea ice produces more oxygen-rich intermediate-water, leading to oxic bottom-water conditions due to active ventilation, which favored good preservation of oxic benthic foraminifera species. Remarkable CaCO3 peaks coeval with high biogenic opal and TOC contents in both cores during MIS 3 to MIS 4 are most likely correlated with Dansgaard-Oeschger (D-O) events. High d15N and d13Corg values during D-O interstadials support increased surface-water productivity resulting from nutrients supplied mainly by intensified BSC. During the EH, BA and D-O interstadials, dominant benthic foraminifera species indicate dysoxic bottom-water conditions as a result of increased surface-water productivity and weak ventilation of intermediate-water with mitigated sea ice development caused by strengthening of the Alaskan Stream. It is of note that the bottom-water conditions and formation of intermediate-water in the Bering Sea during the last glacial period are related to the variation of dissolved oxygen concentration of the bottom-water in the northeastern Pacific and to strong ventilation of intermediate-water in the northwestern Pacific. Thus, the millennial-scale paleoceanographic events in the Bering Sea during the D-O interstadials are closely associated with the intermediate-water ventilation, ultimately leading to weakening of North Pacific Intermediate Water.

Dinocyst datum events of several holes in the Norwegian-Greenland Sea

The presence of abundant age-diagnostic dinoflagellate cysts in Ocean Drilling Program (ODP) Hole 913B (Leg 151), Deep Sea Drilling Project Hole 338 (Leg 38) and ODP Hole 643A (Leg 104) has enabled the development of a new biostratigraphy for the Eocene-Oligocene interval in the Norwegian-Greenland Sea. This development is important because the calcareous microfossils usually used for biostratigraphy in this age interval are generally absent in high latitude sediments as a result of dissolution. In parallel with this biostratigraphic analysis, we developed a magnetic reversal stratigraphy for these Norwegian-Greenland Sea sequences. This has allowed independent age determination and has enabled the dinocyst biostratigraphy to be firmly tied into the global geomagnetic polarity timescale (GPTS). The relatively high resolution of this study has enabled identification of dinoflagellate cyst assemblages that have affinities with those from the North Sea and the North Atlantic, which allows regional correlation. Correlation of each site with the GPTS has also allowed comparison of the stratigraphic record preserved in each drill-hole. Hole 913B is the most complete and is the best-preserved record of the Eocene and Oligocene in the Northern Hemisphere high latitudes, and can serve as a reference section for palaeoenvironmental reconstructions of this age interval.

Environmental context for late Holocene human occupation of the South Wellesley Archipelago, Gulf of Carpentaria, northern Australia

A 2400 year record of environmental change is reported from a wetland on Bentinck Island in the southern Gulf of Carpentaria, northern Australia. Three phases of wetland development are identified, with a protected coastal setting from ca. 2400 to 500 years ago, transitioning into an estuarine mangrove forest from ca. 500 years ago to the 1940s, and finally to a freshwater swamp over the past +60 years. This sequence reflects the influence of falling sea-levels, development of a coastal dune barrier system, prograding shorelines, and an extreme storm (cyclone) event. In addition, there is clear evidence of the impacts that human abandonment and resettlement have on the island's fire regimes and vegetation. A dramatic increase in burning and vegetation thickening was observed after the cessation of traditional Indigenous Kaiadilt fire management practices in the 1940s, and was then reversed when people returned to the island in the 1980s. In terms of the longer context for human occupation of the South Wellesley Archipelago, it is apparent that the mangrove phase provided a stable and productive environment that was conducive for human settlement of this region over the past 1000 years.

Hydrogeological, Geophysical And Geochemical Studies In Parts Of Coastal And Midland Areas, Central Kerala - A Gis Approach

The present study deals with the different hydrogeological characteristics of the coastal region of central Kerala and a comparative analysis with corresponding hard rock terrain. The coastal regions lie in areas where the aquifer systems discharge groundwater ultimately into the sea. Groundwater development in such regions will require a precise understanding of the complex mechanism of the saline and fresh water relationship, so that the withdrawals are so regulated as to avoid situations leading to upcoming of the saline groundwater bodies as also to prevent migration of sea water ingress further inland. Coastal tracts of Kerala are formed by several drainage systems. Thick pile of semi-consolidated and consolidated sediments from Tertiary to Recent age underlies it. These sediments comprise phreatic and confined aquifer systems. The corresponding hard rock terrain is encountered with laterites and underlined by the Precambrian metamorphic rocks. Supply of water from hard rock terrain is rather limited. This may be due to the small pore size, low degree of interconnectivity and low extent of weathering of the country rocks. The groundwater storage is mostly controlled by the thickness and hydrological properties of the weathered zone and the aquifer geometry. The over exploitation of groundwater, beyond the ‘safe yield’ limit, cause undesirable effects like continuous reduction in groundwater levels, reduction in river flows, reduction in wetland surface, degradation of groundwater quality and many other environmental problems like drought, famine etc.

Sedimentological and Geotechnical Studies of Coastal Sediments of Central Kerala.

All over the world, several Quaternary proxy data have been used to reconstruct past sea levels, mainly radiocarbon or OSL dating of exposures of marine facies or shore line indicators (e.g. Carr et al., 2010) as well as paleoenvironmental indicators in lagoon or estuary sediments (e.g. Baxter and Meadows, 1999). Estuaries and deltas develop at river mouths during transgressive and regressive phases, respectively (Boyd et al., 1992). In particular, the postglacial Holocene sea-level rise has contributed importantly to the estuary-to-delta transition (Hori et al. 2004). By analyzing radiocarbon ages of the basal or near-basal sediments of the world’s deltas, Stanley and Warne (1994) showed that delta initiation occurred on a worldwide scale after about 8500–6500 years BP and concluded that the initiation was controlled principally by the declining rate of the Holocene sea-level rise. Worldwide there were different regional sea-level changes since the last glacial maximum (LGM) (Irion et al., 2012). Along the northern Canadian coast, for example, sea level has been falling throughout the Holocene due to the glacial rebound of the crust after the last glaciation (Peltier, 1988). This is comparable to the development in Scandinavia (Steffen and Kaufmann, 2005) where sea level drops today. From about Virginia/USA to Mexico there is a constant sea-level rise similar to the Holocene sea-level development of the southern North Sea (e.g. Vink et al., 2007). From the border of Ceará/Rio Grande do Norte down to Patagonia, indicators of Holocene sea level point to a level that was up to 5 m higher than today's mean sea level (Angulo et al., 1999; Martin et al., 2003; Caldas et al., 2006a, b)

Potencial anti-inflamatório de Pyrenocine A isolada do Penicillium paxilli: abordagem profilática e terapêutica

Pós-graduação em Biociências e Biotecnologia Aplicadas à Farmácia - FCFAR