Utilization and optimization of a waste stream cellulose culture medium for pigment production by Penicillium spp

Aims This research sought to determine optimal corn waste stream–based fermentation medium C and N sources and incubation time to maximize pigment production by an indigenous Indonesian Penicillium spp., as well as to assess pigment pH stability. Methods and Results A Penicillium spp. was isolated from Indonesian soil, identified as Penicillium resticulosum, and used to test the effects of carbon and nitrogen type and concentrations, medium pH, incubation period and furfural on biomass and pigment yield (PY) in a waste corncob hydrolysate basal medium. Maximum red PY (497·03 ± 55·13 mg l−1) was obtained with a 21 : 1 C : N ratio, pH 5·5–6·0; yeast extract-, NH4NO3-, NaNO3-, MgSO4·7H2O-, xylose- or carboxymethylcellulose (CMC)-supplemented medium and 12 days (25°C, 60–70% relative humidity, dark) incubation. C source, C, N and furfural concentration, medium pH and incubation period all influenced biomass and PY. Pigment was pH 2–9 stable. Conclusions Penicillium resticulosum demonstrated microbial pH-stable-pigment production potential using a xylose or CMC and N source, supplemented waste stream cellulose culture medium. Significance and Impact of the Study Corn derived, waste stream cellulose can be used as a culture medium for fungal pigment production. Such application provides a process for agricultural waste stream resource reuse for production of compounds in increasing demand.

A gene encoding a new cold-active lipase from an Antarctic isolate of Penicillium expansum

Cold-active lipases are of significant interest as biocatalysts in industrial processes. We have identified a lipase that displayed activity towards long carbon-chain-p-nitrophenyl substrates (C12–C18) at 25 °C from the culture supernatant of an Antarctic Penicillium expansum strain assigned P. expansum SM3. Zymography revealed a protein band of around 30 kDa with activity towards olive oil. DNA fragments of a lipase gene designated as lipPE were isolated from the genomic DNA of P. expansum SM3 by genomic walking PCR. Subsequently, the complete genomic lipPE gene was amplified using gene-specific primers designed from the 5′- and 3′-regions. Reverse transcription PCR was used to amplify the lipPE cDNA. The deduced amino acid sequence consisted of 285 residues that included a predicted signal peptide. Three peptides identified by LC/MS/MS analysis of the proteins in the culture supernatant of P. expansum were also present in the deduced amino acid sequence of the lipPE gene suggesting that this gene encoded the lipase identified by initial zymogram activity analysis. Full analysis of the nucleotide and the deduced amino acid sequences indicated that the lipPE gene encodes a novel P. expansum lipase. The lipPE gene was expressed in E. coli for further characterization of the enzyme with a view of assessing its suitability for industrial applications.

Characterisation, cloning and production of industrially interesting enzymes: gluconolactone oxidase of Penicillium cyaneo-fulvum and gluconate 5-dehydrogenase of Gluconobacter suboxydans

The work covered in this thesis is focused on the development of technology for bioconversion of glucose into D-erythorbic acid (D-EA) and 5-ketogluconic acid (5-KGA). The task was to show on proof-of-concept level the functionality of the enzymatic conversion or one-step bioconversion of glucose to these acids. The feasibility of both studies to be further developed for production processes was also evaluated. The glucose - D-EA bioconversion study was based on the use of a cloned gene encoding a D-EA forming soluble flavoprotein, D-gluconolactone oxidase (GLO). GLO was purified from Penicillium cyaneo-fulvum and partially sequenced. The peptide sequences obtained were used to isolate a cDNA clone encoding the enzyme. The cloned gene (GenBank accession no. AY576053) is homologous to the other known eukaryotic lactone oxidases and also to some putative prokaryotic lactone oxidases. Analysis of the deduced protein sequence of GLO indicated the presence of a typical secretion signal sequence at the N-terminus of the enzyme. No other targeting/anchoring signals were found, suggesting that GLO is the first known lactone oxidase that is secreted rather than targeted to the membranes of the endoplasmic reticulum or mitochondria. Experimental evidence supports this analysis, as near complete secretion of GLO was observed in two different yeast expression systems. Highest expression levels of GLO were obtained using Pichia pastoris as an expression host. Recombinant GLO was characterised and the suitability of purified GLO for the production of D-EA was studied. Immobilised GLO was found to be rapidly inactivated during D-EA production. The feasibility of in vivo glucose - D-EA conversion using a P. pastoris strain co-expressing the genes of GLO and glucose oxidase (GOD, E.C. 1.1.3.4) of A. niger was demonstrated. The glucose - 5-KGA bioconversion study followed a similar strategy to that used in the D-EA production research. The rationale was based on the use of a cloned gene encoding a membrane-bound pyrroloquinoline quinone (PQQ)-dependent gluconate 5-dehydrogenase (GA 5-DH). GA 5-DH was purified to homogeneity from the only source of this enzyme known in literature, Gluconobacter suboxydans, and partially sequenced. Using the amino acid sequence information, the GA 5-DH gene was cloned from a genomic library of G. suboxydans. The cloned gene was sequenced (GenBank accession no. AJ577472) and found to be an operon of two adjacent genes encoding two subunits of GA 5-DH. It turned out that GA 5-DH is a rather close homologue of a sorbitol dehydrogenase from another G. suboxydans strain. It was also found that GA 5-DH has significant polyol dehydrogenase activity. The G. suboxydans GA 5-DH gene was poorly expressed in E. coli. Under optimised conditions maximum expression levels of GA 5-DH did not exceed the levels found in wild-type G. suboxydans. Attempts to increase expression levels resulted in repression of growth and extensive cell lysis. However, the expression levels were sufficient to demonstrate the possibility of bioconversion of glucose and gluconate into 5-KGA using recombinant strains of E. coli. An uncharacterised homologue of GA 5-DH was identified in Xanthomonas campestris using in silico screening. This enzyme encoded by chromosomal locus NP_636946 was found by a sequencing project of X. campestris and named as a hypothetical glucose dehydrogenase. The gene encoding this uncharacterised enzyme was cloned, expressed in E. coli and found to encode a gluconate/polyol dehydrogenase without glucose dehydrogenase activity. Moreover, the X. campestris GA 5-DH gene was expressed in E. coli at nearly 30 times higher levels than the G. suboxydans GA 5-DH gene. Good expressability of the X. campestris GA-5DH gene makes it a valuable tool not only for 5-KGA production in the tartaric acid (TA) bioprocess, but possibly also for other bioprocesses (e.g. oxidation of sorbitol into L-sorbose). In addition to glucose - 5-KGA bioconversion, a preliminary study of the feasibility of enzymatic conversion of 5-KGA into TA was carried out. Here, the efficacy of the first step of a prospective two-step conversion route including a transketolase and a dehydrogenase was confirmed. It was found that transketolase convert 5-KGA into TA semialdehyde. A candidate for the second step was suggested to be succinic dehydrogenase, but this was not tested. The analysis of the two subprojects indicated that bioconversion of glucose to TA using X. campestris GA 5-DH should be prioritised first and the process development efforts in future should be focused on development of more efficient GA 5-DH production strains by screening a more suitable production host and by protein engineering.

Hualyzin, a symmetrical urea derivative isolated from Penicillium herquei isolate GA4

Penicillium herquei isolate GA4 was isolated from the infected Conchocelis of Porphyra yezoensis. A large-scale fermentation using yeast extract sucrose medium and repeated chromatography afforded a new symmetrical urea derivative, hualyzin (1). The structure was determined by detailed NMR spectroscopic investigations and MS fragmentation analysis.

Chemical Constituents of a Marine-Derived Endophytic Fungus Penicillium commune G2M

Cultivation of the endophytic fungus Penicillium commune, which was isolated from the semi-mangrove plant Hibiscus tiliaceus, afforded one new compound 1-O-(2,4-dihydroxy-6-methylbenzoyl)-glycerol (1) along with thirteen known products, including 1-O-acetylglycerol (2), N-acetyltryptophan (3), 3-indolylacetic acid methyl ester (4), 1-(2,4-dihydroxy-3,5-dimethylphenyl)ethanone (5), 2-(2,5-dihydroxyphenyl)acetic acid (6), (4R,5S)-5-hydroxyhexan-4-olide (7), thymidine (8), uracil (9), thymine (10), ergosterol (11), beta-sitosterol (12), beta-daucosterol (13), and ergosta-7,22-dien-3 beta,5 alpha,6 beta-triol (14). The structures of these compounds were established by detailed NMR spectroscopic analysis, as well as by comparison with literature data or with authentic samples.

Comparison of two marine sponge-associated Penicillium strains DQ25 and SC10: differences in secondary metabolites and their bioactivities

Two strains of Penicillium, DQ25 and SC10, isolated from marine sponge Haliclona angulata (Bowerbank) and Hymeniacidon sp. respectively, were subjected to stationary cultivation under GYP medium for 30 days. The fermentation extracts were undergone bioactivities assays against human pathogens, phytopathogenic fungi and brine shrimp (Artemia salina). Bioassays-guided compounds isolation was performed by Silica gel columns and Sephadex LH-20 chromatography. Spectroscopic methods were used to structures elucidation of the compounds. Results showed the activities of secondary metabolites of strain DQ25 were generally stronger than that of strain SC10. Major bioactive molecules isolated from strain DQ25 were a 1,4-naphthoquinone derivative and an unidentified alkaloid. The two components were not isolated from the extract of strain SC10. ITS sequences revealed that these two species have the greatest similarity with Penicillium vinaceum and Penicillium granulatum respectively.

Engineering design of a bioprocess for the production of natural red colourants by submerged fermentation of the thermophilic fungus Penicillium purpurogenum GH2

The development of a new bioprocess requires several steps from initial concept to a practical and feasible application. Industrial applications of fungal pigments will depend on: (i) safety of consumption, (ii) stability of the pigments to the food processing conditions required by the products where they will be incorporated and (iii) high production yields so that production costs are reasonable. Of these requirements the first involves the highest research costs and the practical application of this type of processes may face several hurdles until final regulatory approval as a new food ingredient. Therefore, before going through expensive research to have them accepted as new products, the process potential should be assessed early on, and this brings forward pigment stability studies and process optimisation goals. Only ingredients that are usable in economically feasible conditions should progress to regulatory approval. This thesis covers these two aspects, stability and process optimisation, for a potential new ingredient; natural red colour, produced by microbial fermentation. The main goal was to design, optimise and scale-up the production process of red pigments by Penicillium purpurogenum GH2. The approach followed to reach this objective was first to establish that pigments produced by Penicillium purpurogenum GH2 are sufficiently stable under different processing conditions (thermal and non-thermal) that can be found in food and textile industries. Once defined that pigments were stable enough, the work progressed towards process optimisation, aiming for the highest productivity using submerged fermentation as production culture. Optimum production conditions defined at flask scale were used to scale up the pigment production process to a pilot reactor scale. Finally, the potential applications of the pigments were assessed. Based on this sequence of specific targets, the thesis was structured in six parts, containing a total of nine chapters. Engineering design of a bioprocess for the production of natural red colourants by submerged fermentation of the thermophilic fungus Penicillium purpurogenum GH2.

Sistemas alternativos a los fungicidas químicos para el control de Penicillium digitatum (Pers.) Sacc. en limón

Argentina es el principal productor mundial de limones en el mundo y el 90 por ciento de esta producción se sitúa en la provincia de Tucumán. Las pérdidas económicas ocasionadas por las enfermedades de poscosecha representan uno de los principales problemas de la citricultura mundial, siendo el 80 por ciento atribuíbles a infecciones fúngicas. El moho verde causado por Penicillium digitatum (Pers.) Sacc. (PD), es la enfermedad de mayor incidencia y severidad durante la exportación de frutos de limón. Actualmente el control de estas enfermedades se realiza con el uso de fungicidas de síntesis química. Debido a las severas restricciones impuestas a estos productos, por regulaciones ambientales y de la salud, hay una fuerte necesidad de métodos alternativos de control. El objetivo de este trabajo de tesis fue evaluar alternativas de bajo impacto ambiental : bacterias lácticas, extractos vegetales, Serenade® (Bacillus subtilis QST 713) y bicarbonato de sodio; con actividad antifúngica directa o a través de la inducción de mecanismos de defensa, para el control de PD en condiciones in vitro e in vivo (frutos de limón). De un total de 33 cepas de bacterias lácticas evaluadas, se seleccionaron ocho con propiedades antifúngicas frente a PD. Se identificaron los metabolitos antifúngicos como ácidos orgánicos (ácido láctico, ácido acético y ácido fenil láctico) y se determinó la combinación óptima con mayor actividad inhibitoria. Los productos alternativos: extractos vegetales, Serenade® y bicarbonato de sodio, presentaron actividad antifúngica in vitro a PD con porcentajes de inhibición entre 2,1 - 16 por ciento. En los frutos de limón, los tratamientos alternativos no fueron efectivos por sí solos para controlar en forma directa la enfermedad. Estos tratamientos redujeron significativamente la severidad de la enfermedad, excepto el Serenade® cuando fue aplicado simultáneamente con el inóculo. Esta reducción fue más marcada cuando se dejaron transcurrir 18 h entre inoculación y aplicación de los tratamientos. El bicarbonato de sodio al 3 por ciento y en menor medida el Serenade® al 1 por ciento indujeron una respuesta de defensa de los frutos y controlaron la enfermedad en un 96,7 por ciento y 56,7 por ciento, respectivamente. En cromatografía de capa fina y fluorometría se detectó un aumento de la fitoalexina escoparona, sugiriendo que este efecto se produciría como resultado de la inducción de mecanismos de defensa, mientras que la umbeliferona no fue detectada. Estos resultados indican que los productos biológicos actuaron como una barrera al avance de la enfermedad, retrasando la severidad de la misma e induciendo de una respuesta de defensa en los frutos.

Sistemas alternativos a los fungicidas químicos para el control de Penicillium digitatum (Pers.)Sacc. en limón

Argentina es el principal productor mundial de limones en el mundo y el 90 por ciento de esta producción se sitúa en la provincia de Tucumán. Las pérdidas económicas ocasionadas por las enfermedades de poscosecha representan uno de los principales problemas de la citricultura mundial, siendo el 80 por ciento atribuíbles a infecciones fúngicas. El moho verde causado por Penicillium digitatum (Pers.)Sacc. (PD), es la enfermedad de mayor incidencia y severidad durante la exportación de frutos de limón. Actualmente el control de estas enfermedades se realiza con el uso de fungicidas de síntesis química. Debido a las severas restricciones impuestas a estos productos, por regulaciones ambientales y de la salud, hay una fuerte necesidad de métodos alternativos de control. El objetivo de este trabajo de tesis fue evaluar alternativas de bajo impacto ambiental : bacterias lácticas, extractos vegetales, Serenade® (Bacillus subtilis QST 713)y bicarbonato de sodio; con actividad antifúngica directa o a través de la inducción de mecanismos de defensa, para el control de PD en condiciones in vitro e in vivo (frutos de limón). De un total de 33 cepas de bacterias lácticas evaluadas, se seleccionaron ocho con propiedades antifúngicas frente a PD. Se identificaron los metabolitos antifúngicos como ácidos orgánicos (ácido láctico, ácido acético y ácido fenil láctico)y se determinó la combinación óptima con mayor actividad inhibitoria. Los productos alternativos: extractos vegetales, Serenade® y bicarbonato de sodio, presentaron actividad antifúngica in vitro a PD con porcentajes de inhibición entre 2,1 - 16 por ciento. En los frutos de limón, los tratamientos alternativos no fueron efectivos por sí solos para controlar en forma directa la enfermedad. Estos tratamientos redujeron significativamente la severidad de la enfermedad, excepto el Serenade® cuando fue aplicado simultáneamente con el inóculo. Esta reducción fue más marcada cuando se dejaron transcurrir 18 h entre inoculación y aplicación de los tratamientos. El bicarbonato de sodio al 3 por ciento y en menor medida el Serenade® al 1 por ciento indujeron una respuesta de defensa de los frutos y controlaron la enfermedad en un 96,7 por ciento y 56,7 por ciento, respectivamente. En cromatografía de capa fina y fluorometría se detectó un aumento de la fitoalexina escoparona, sugiriendo que este efecto se produciría como resultado de la inducción de mecanismos de defensa, mientras que la umbeliferona no fue detectada. Estos resultados indican que los productos biológicos actuaron como una barrera al avance de la enfermedad, retrasando la severidad de la misma e induciendo de una respuesta de defensa en los frutos.