The v-MFG test: Investigating maternal, offspring and maternal-fetal genetic incompatibility effects on disease and viability

The MFG test is a family-based association test that detects genetic effects contributing to disease in offspring, including offspring allelic effects, maternal allelic effects and MFG incompatibility effects. Like many other family-based association tests, it assumes that the offspring survival and the offspring-parent genotypes are conditionally independent provided the offspring is affected. However, when the putative disease-increasing locus can affect another competing phenotype, for example, offspring viability, the conditional independence assumption fails and these tests could lead to incorrect conclusions regarding the role of the gene in disease. We propose the v-MFG test to adjust for the genetic effects on one phenotype, e.g., viability, when testing the effects of that locus on another phenotype, e.g., disease. Using genotype data from nuclear families containing parents and at least one affected offspring, the v-MFG test models the distribution of family genotypes conditional on offspring phenotypes. It simultaneously estimates genetic effects on two phenotypes, viability and disease. Simulations show that the v-MFG test produces accurate genetic effect estimates on disease as well as on viability under several different scenarios. It generates accurate type-I error rates and provides adequate power with moderate sample sizes to detect genetic effects on disease risk when viability is reduced. We demonstrate the v-MFG test with HLA-DRB1 data from study participants with rheumatoid arthritis (RA) and their parents, we show that the v-MFG test successfully detects an MFG incompatibility effect on RA while simultaneously adjusting for a possible viability loss.

MSX1 gene and nonsyndromic oral clefts in a Southern Brazilian population

Nonsyndromic oral clefts (NSOC) are the most common craniofacial birth defects in humans. The etiology of NSOC is complex, involving both genetic and environmental factors. Several genes that play a role in cellular proliferation, differentiation, and apoptosis have been associated with clefting. For example, variations in the homeobox gene family member MSX1, including a CA repeat located within its single intron, may play a role in clefting. The aim of this study was to investigate the association between MSX1CA repeat polymorphism and NSOC in a Southern Brazilian population using a case-parent triad design. We studied 182 nuclear families with NSOC recruited from the Hospital de Clínicas de Porto Alegre in Southern Brazil. The polymorphic region was amplified by the polymerase chain reaction and analyzed by using an automated sequencer. Among the 182 families studied, four different alleles were observed, at frequencies of 0.057 (175 bp), 0.169 (173 bp), 0.096 (171 bp) and 0.67 (169 bp). A transmission disequilibrium test with a family-based association test (FBAT) software program was used for analysis. FBAT analysis showed overtransmission of the 169 bp allele in NSOC (P=0.0005). These results suggest that the CA repeat polymorphism of theMSX1 gene may play a role in risk of NSOC in populations from Southern Brazil.

Impact du passé criminel des parents sur les comportements délinquants d’une cohorte d’adolescents suivis depuis la maternelle

Selon plusieurs études, il y aurait une certaine association des comportements déviants à travers le temps et à travers les générations. Peu importe l’angle d’analyse, le fait que la délinquance soit liée d’une génération à une autre semble confirmé par plusieurs recherches empiriques. Cela étant dit, cette étude met à l’épreuve le modèle suggérant un lien intergénérationnel entre les comportements délinquants des adolescents et de leurs parents. En utilisant des données longitudinales recueillies auprès de 1037 garçons provenant de quartiers défavorisés d’une grande ville canadienne, nous examinons les comportements violents et les comportements de vol de ces adolescents alors qu’ils étaient âgés entre 11 et 17 ans tout en examinant l’effet du passé criminel de la mère et du père. Par la suite, diverses variables médiatrices familiales telles que la supervision inadéquate des parents, la punition erratique des parents et l’attachement à la famille sont ajoutées aux modèles pour évaluer leur part explicative dans cette association statistique. En réalisant deux modèles multiniveaux paramétriques, soit un pour chaque type de délinquance, les résultats de l’analyse permettent de constater d’une part, qu’un lien est observé entre les comportements violents des garçons et la présence d’un dossier criminel chez la mère et d’autre part, que la criminalité du père n’est pas associée aux comportements délinquants des garçons. Également, bien que la supervision parentale explique légèrement ce lien, les facteurs familiaux inclus dans l’analyse ne parviennent pas à expliquer en totalité cette relation entre la criminalité de la mère et les comportements délinquants de leurs garçons. Enfin, bien que la puissance statistique des données limite partiellement les conclusions générales, nous discutons des implications théoriques de ces résultats.

Mutational analysis of phytochrome B identifies a small COOH-terminal-domain region critical for regulatory activity.

Overexpression of phytochrome B (phyB) in transgenic Arabidopsis results in enhanced deetiolation in red light. To define domains of phyB functionally important for its regulatory activity, we performed chemical mutagenesis of a phyB-overexpressing line and screened for phenotypic revertants in red light. Four phyB-transgene-linked revertants that retain parental levels of full-length, dimeric, and spectrally normal overexpressed phyB were identified among 101 red-light-specific revertants. All carry single amino acid substitutions in the transgene-encoded phyB that reduce activity by 40- to 1000-fold compared to the nonmutagenized parent. The data indicate that the mutant molecules are fully active in photosignal perception but defective in the regulatory activity responsible for signal transfer to downstream components. All four mutations fall within a 62-residue region in the COOH-terminal domain of phyB, with two independent mutations occurring in a single amino acid, Gly-767. Accumulating evidence indicates that the identified region is a critical determinant in the regulatory function of both phyB and phyA.

Sleep Patterns and Parents’ Experience in Caring for Young Children Newly Diagnosed with Juvenile Idiopathic Arthritis

Thesis (Ph.D.)--University of Washington, 2016-05

A comparison of U.S. and Japanese management systems and their transferability to Singapore industry

This research compares U.S. and Japanese management systems and evaluates their transferability to the Singaporean manufacturing industry. The objectives were:- a) To determine the effectiveness of U.S. and Japanese management systems when applied to Singapore. b) Determine the extent of transferability of U.S. and Japanese management systems to Singapore. c) Survey general problems ecountered in the application of U.S. and Japanese management systems to the Singapore industry. The study using questionnaire survey and interviews covered a total of eighty companies from four groups of firms in four industrial sectors comprising of U.S. and Japanese subsidiaries based in Singapore and their respective parent companies. Data from the questionnaires and interviews were used to investigate environmental conditions, management philosophy, management functions/practices, management effectiveness, and firm productivity. Two-way analysis of variance was used to analyse the questionnaire data. The analysis of the perceptual data from the questionnaire survey and interviews suggested that both U.S. and Japanese parent companies performed better in almost all the management variables studied when compared to their subsidiaries in Singapore. U.S. subsidiaries have less difficulty in adjusting to the Singapore environmental conditions and obtained better results than the Japanese subsidiaries in management functions/practices and management philosophy than the U.S. subsidiaries. In addition, the firm productivity (in terms of labour and capital productivity) of U.S. subsidiaries in Singapore was found to be higher than those of the Japanese subsidiaries. It was found that the Japanese parent companies returned the highest score among the four groups of firms in all the four industrial sectors for all the four management variables (i.e. environmental conditions, management philosophy, management functions/practices, and management effectiveness) surveyed using questionnaires. In contrast, the average score for Japanese subsidiaries in Singapore was generally the lowest among the four groups of firms. Thus the results of this study suggest that the transfer of U.S. management system into the Singapore industry is more successful than the Japanese management system. The problems encountered in the application of U.S. and Japanese management in Singapore were identified and discussed by the study. General recommendations for the Singaporean manufacturing industry were then made based on the findings of the questionnaire survey and interview analysis.

Mechanism of uptake of the catecholic (7)-α-formamido cephalosporin BRL 41897A by klebsiella pneumoniae

The catecholic cephalosporin BRL 41897 A is resistant to β-lactamases and is taken up by bacteria via the iron transport system. The uptake of this antibiotic in E.coli uses the Fiu and Cir outer membrane proteins, whereas in P. aerugtnosa it enters via the pyochelin transport system. In this thesis mutants of K. pneumoniae resistant to BRL 41897A were isolated using TnphoA mutagenesis and used to study the mechanism of uptake of BRL 41897A by K. pneumoniae. The activity of BRL 41897A towards the parent strain (M10) was increased in iron depleted media, whereas no significant differences in the resistant (KSL) mutants were observed. Three mutants (KSL19, KSL38and KSL59) produced decreased amounts of certain iron-regulated outer membrane proteins. The uptake of 55Fe-BRL 41897A by M10 in iron-deficient medium was higher than in iron-rich medium. This result indicated the involvement of an iron transport system in the uptake of BRL 41897A by K. pneumoniae. Uptake by the KSL mutants in iron-deficient culture was higher than that by M10. This result, supported by analysis of outer membrane and periplasmic proteins of the KSL mutants, indicates that loss of one outer membrane protein can be compensated by over expression of other outer membrane and/or periplasmic proteins. However, the increased uptake of BRL 41897A by the KSL mutants did not reflect increased activity towards these strains, indicating that there are defects in the transport of BRL 41897A resulting in failure to reach the penicillin binding protein target sites in the cytoplasmic membrane. Southern blotting of chromosomal digests and sequencing in one mutant (KSL19) showed that only one copy of TnphoA was inserted into its chromosome. A putative TnphoA inserted gene in KSL19, designated kslA, carrying a signal sequence was identified. Transformation of a fragment containing the kslA gene into KSL19 cells restored the sensitivity to BRL 41897A to that of the parent strain. Data base peptide sequence searches revealed that the kslA gene in the KSL19 has some amino acid homology with the E. coli ExbD protein, which is involved in stabilisation of the TonB protein. 

Associations prospectives entre l'environnement des repas en famille et le développement bio-psycho-social d'enfants d'âge scolaire

Contexte. Depuis quelques années, plusieurs études se sont intéressées aux effets protecteurs des repas en famille sur divers aspects du développement des enfants et des adolescents. Objectif. Identifier les associations prospectives entre l'environnement des repas en famille à 6 ans et le développement bio-psycho-social à 10 ans. Méthode. Les participants sont 1 085 filles et 1 138 garçons faisant partie de l'Étude Longitudinale du Développement des Enfants du Québec (ÉLDEQ), qui a sélectionné un échantillon aléatoire et stratifié en utilisant le registre des naissances du Québec. Dans ce devis prospectif-longitudinal, les parents ont fourni une mesure sur l'environnement de leurs repas en famille à l'âge de 6 ans. Quatre années plus tard, les parents ont également fourni des mesures sur le niveau de condition physique de leur enfant ainsi que sa fréquence de consommation de boissons gazeuses; les enseignants ont mesuré la réussite en lecture et en mathématiques; les enfants ont auto-rapporté leurs niveaux d’agressivité physique globale, d’opposition, du trouble du comportement non agressif et d’agressivité réactive. Des analyses de régressions multiples ont été réalisées. Résultats. Un environnement plus sain lors des repas en famille à 6 ans a prédit les bénéfices suivants à 10 ans : une augmentation de la condition physique (β = 0,24; 95 % intervalle de confiance [IC], 0,12 à 0,36) ainsi qu'une diminution de la consommation de boissons gazeuses (β = -0,43; 95 % IC, -0,62 à -0,23), de l'agressivité physique globale (β = -0,38; 95 % IC, -0,58 à -0,18), de l'opposition (β = -0,72; 95 % IC, -1 à -0,4), du trouble du comportement non agressif (β = -0,33; 95 % IC, -0,50 à -0,17) et de l'agressivité réactive (β = -0,70; 95 % IC, -0,98 à -0,42). Contrairement à nos attentes, l'environnement des repas en famille n'était pas significativement relié au rendement scolaire. Conclusion. Les repas familiaux ont une forte influence à long terme sur le développement de l'enfant, par rapport à sa santé physique et à son ajustement social. Par conséquent, ils pourraient nourrir une campagne informative intéressante qui porterait sur la promotion de la santé mentale et physique des jeunes à travers ce rituel social.

The Effect of a Multi-Component Consultation Intervention on the Pragmatic Language Skills of Students with Symptoms of Attention Deficit Hyperactivity Disorder

The purpose of this research was to determine if a multi-component consultation intervention was effective in improving pragmatic performance in students with ADHD. Participants for this study consisted of 7 children for whom 3 data points were obtained by a parent or 2 data points by a teacher. Changes in pragmatic performance were measured by comparing reports provided by parents or teachers pre- and post- intervention. Descriptive analysis procedures were completed to summarize changes in pragmatic behavior. Results revealed the mean overall change in pragmatic behavior for children in the MCC condition (Χ=1.133) was greater than the change seen in the CAU condition (.334) after 2 months of intervention as per parent reported data. Data indicated improvement in each behavior but incongruence between teachers and parents was found. Results support the hypothesis that the multi-component consultation intervention is effective in improving the pragmatic language performance of children with ADHD.

Associations prospectives entre l'environnement des repas en famille et le développement bio-psycho-social d'enfants d'âge scolaire

Contexte. Depuis quelques années, plusieurs études se sont intéressées aux effets protecteurs des repas en famille sur divers aspects du développement des enfants et des adolescents. Objectif. Identifier les associations prospectives entre l'environnement des repas en famille à 6 ans et le développement bio-psycho-social à 10 ans. Méthode. Les participants sont 1 085 filles et 1 138 garçons faisant partie de l'Étude Longitudinale du Développement des Enfants du Québec (ÉLDEQ), qui a sélectionné un échantillon aléatoire et stratifié en utilisant le registre des naissances du Québec. Dans ce devis prospectif-longitudinal, les parents ont fourni une mesure sur l'environnement de leurs repas en famille à l'âge de 6 ans. Quatre années plus tard, les parents ont également fourni des mesures sur le niveau de condition physique de leur enfant ainsi que sa fréquence de consommation de boissons gazeuses; les enseignants ont mesuré la réussite en lecture et en mathématiques; les enfants ont auto-rapporté leurs niveaux d’agressivité physique globale, d’opposition, du trouble du comportement non agressif et d’agressivité réactive. Des analyses de régressions multiples ont été réalisées. Résultats. Un environnement plus sain lors des repas en famille à 6 ans a prédit les bénéfices suivants à 10 ans : une augmentation de la condition physique (β = 0,24; 95 % intervalle de confiance [IC], 0,12 à 0,36) ainsi qu'une diminution de la consommation de boissons gazeuses (β = -0,43; 95 % IC, -0,62 à -0,23), de l'agressivité physique globale (β = -0,38; 95 % IC, -0,58 à -0,18), de l'opposition (β = -0,72; 95 % IC, -1 à -0,4), du trouble du comportement non agressif (β = -0,33; 95 % IC, -0,50 à -0,17) et de l'agressivité réactive (β = -0,70; 95 % IC, -0,98 à -0,42). Contrairement à nos attentes, l'environnement des repas en famille n'était pas significativement relié au rendement scolaire. Conclusion. Les repas familiaux ont une forte influence à long terme sur le développement de l'enfant, par rapport à sa santé physique et à son ajustement social. Par conséquent, ils pourraient nourrir une campagne informative intéressante qui porterait sur la promotion de la santé mentale et physique des jeunes à travers ce rituel social.

Using household survey data to inform policy decisions regarding the delivery of evidence-based parenting interventions.

Background: This study used household survey data on the prevalence of child, parent and family variables to establish potential targets for a population-level intervention to strengthen parenting skills in the community. The goals of the intervention include decreasing child conduct problems, increasing parental self-efficacy, use of positive parenting strategies, decreasing coercive parenting and increasing help-seeking, social support and participation in positive parenting programmes. Methods: A total of 4010 parents with a child under the age of 12 years completed a statewide telephone survey on parenting. Results: One in three parents reported that their child had a behavioural or emotional problem in the previous 6 months. Furthermore, 9% of children aged 2–12 years meet criteria for oppositional defiant disorder. Parents who reported their child's behaviour to be difficult were more likely to perceive parenting as a negative experience (i.e. demanding, stressful and depressing). Parents with greatest difficulties were mothers without partners and who had low levels of confidence in their parenting roles. About 20% of parents reported being stressed and 5% reported being depressed in the 2 weeks prior to the survey. Parents with personal adjustment problems had lower levels of parenting confidence and their child was more difficult to manage. Only one in four parents had participated in a parent education programme. Conclusions: Implications for the setting of population-level goals and targets for strengthening parenting skills are discussed.

A parent-completed developmental questionnaire: Follow up of ex-premature infants

Objective: premature infants are at increased risk of developmental disability. Early identification of problems allows intervention to ameliorate or attenuate problems. A reliable screening tool allows triage of children in this high-risk population by identifying those unlikely to need full developmental assessment. To explore the test characteristics of an established parent-completed developmental assessment questionnaire 'Ages and Stages Questionnaire' (ASQ) in follow up of an Australian population of premature infants. Methodology: One hundred and sixty-seven children born prematurely with corrected ages 12- to 48-months attending the Growth and Development Clinic at the Mater Children's Hospital in Brisbane, Queensland, Australia; 136 questionnaires 'ASQ' were returned completed (81%) and were compared to formal psychometric assessment (Griffith Mental Development Scales for 12- and 24-months, Bayley Mental Development Intelligence Scale for 18-months, McCarthy General Cognitive Intelligence Scale for 18-months). Developmental delay was considered to be present if any of the above psychometric assessments fell below 1.0 standard deviations (SD). The ASQ cut-off used was 2.0 SD (US data derived means and SD). Results: Aggregate results for all age groups comparing ASQ to psychometric assessments as 'gold standards' found the ASQ to have the following test characteristics: sensitivity (90%); specificity (77%); positive predictive value (40%); negative predictive value (98%): % over-referred (20%); % under-referred (1%); % agreement (79%). likelihood ratio for children failing the ASQ was 3.8 and for passing the ASQ was 0.13. Twenty-one children with known disabilities were included in the study and in 14 of these, the ASQ overall score agreed with the psychometric assessment (67%). Conclusion: The high negative predictive value of the ASQ supports its use as a screening tool for cognitive and motor delays in the follow up of ex-premature infants. This would need to be combined with other strategies as part of a comprehensive follow up program for ex-premature infants.

Parent-child agreement and prevalence estimates of diagnoses in childhood: direct interview versus family history method.

Diagnostic information on children is typically elicited from both children and their parents. The aims of the present paper were to: (1) compare prevalence estimates according to maternal reports, paternal reports and direct interviews of children [major depressive disorder (MDD), anxiety and attention-deficit and disruptive behavioural disorders]; (2) assess mother-child, father-child and inter-parental agreement for these disorders; (3) determine the association between several child, parent and familial characteristics and the degree of diagnostic agreement or the likelihood of parental reporting; (4) determine the predictive validity of diagnostic information provided by parents and children. Analyses were based on 235 mother-offspring, 189 father-offspring and 128 mother-father pairs. Diagnostic assessment included the Kiddie-schedule for Affective Disorders and Schizophrenia (K-SADS) (offspring) and the Diagnostic Interview for Genetic Studies (DIGS) (parents and offspring at follow-up) interviews. Parental reports were collected using the Family History - Research Diagnostic Criteria (FH-RDC). Analyses revealed: (1) prevalence estimates for internalizing disorders were generally lower according to parental information than according to the K-SADS; (2) mother-child and father-child agreement was poor and within similar ranges; (3) parents with a history of MDD or attention deficit hyperactivity disorder (ADHD) reported these disorders in their children more frequently; (4) in a sub-sample followed-up into adulthood, diagnoses of MDD, separation anxiety and conduct disorder at baseline concurred with the corresponding lifetime diagnosis at age 19 according to the child rather than according to the parents. In conclusion, our findings support large discrepancies of diagnostic information provided by parents and children with generally lower reporting of internalizing disorders by parents, and differential reporting of depression and ADHD by parental disease status. Follow-up data also supports the validity of information provided by adolescent offspring.

Documenting a time-bound, circular view of hierarchies: a microanalysis of parent-infant dyadic interaction.

This article presents a new theory that separates the levels of communication and relates them circularly, namely, by separating time from space/meaning variables. Documenting this proposition requires sequential microdescriptions--a far-out project in the field of family therapy. In an extensive study of clinical and nonclinical families, starting with available microanalytic data on nonverbal parent-infant dialogue, distinct time organizations have been found to modify the degree of circularity between the levels of interaction according to the observed types of engagement, that is, consensual, conflictual, and paradoxical. The double description of the dyad as a totality versus the dyad as a framing/developing organization imparts crucial information on how development proceeds in dyadic, co-evolutive systems, and presumably in larger ones too. In this perspective, a model is elaborated and then applied to a case description in our therapeutic consultation.