Groundnut Bud Necrosis Virus Encoded NSm Associates with Membranes via Its C-Terminal Domain

Groundnut Bud Necrosis Virus (GBNV) is a tripartite ambisense RNA plant virus that belongs to serogroup IV of Tospovirus genus. Non-Structural protein-m (NSm), which functions as movement protein in tospoviruses, is encoded by the M RNA. In this communication, we demonstrate that despite the absence of any putative transmembrane domain, GBNV NSm associates with membranes when expressed in E. coli as well as in N. benthamiana. Incubation of refolded NSm with liposomes ranging in size from 200-250 nm resulted in changes in the secondary and tertiary structure of NSm. A similar behaviour was observed in the presence of anionic and zwitterionic detergents. Furthermore, the morphology of the liposomes was found to be modified in the presence of NSm. Deletion of coiled coil domain resulted in the inability of in planta expressed NSm to interact with membranes. Further, when the C-terminal coiled coil domain alone was expressed, it was found to be associated with membrane. These results demonstrate that NSm associates with membranes via the C-terminal coiled coil domain and such an association may be important for movement of viral RNA from cell to cell.

GBNV encoded movement protein (NSm) remodels ER network via C-terminal coiled coil domain

Plant viruses exploit the host machinery for targeting the viral genome-movement protein complex to plasmodesmata (PD). The mechanism by which the non-structural protein m (NSm) of Groundnut bud necrosis virus (GBNV) is targeted to PD was investigated using Agrobacterium mediated transient expression of NSm and its fusion proteins in Nicotiana benthamiana. GFP:NSm formed punctuate structures that colocalized with mCherry:plasmodesmata localized protein la (PDLP la) confirming that GBNV NSm localizes to PD. Unlike in other movement proteins, the C-terminal coiled coil domain of GBNV NSm was shown to be involved in the localization of NSm to PD, as deletion of this domain resulted in the cytoplasmic localization of NSm. Treatment with Brefeldin A demonstrated the role of ER in targeting GFP NSm to PD. Furthermore, mCherry:NSm co-localized with ER-GFP (endoplasmic reticulum targeting peptide (HDEL peptide fused with GFP). Co-expression of NSm with ER-GFP showed that the ER-network was transformed into vesicles indicating that NSm interacts with ER and remodels it. Mutations in the conserved hydrophobic region of NSm (residues 130-138) did not abolish the formation of vesicles. Additionally, the conserved prolines at positions 140 and 142 were found to be essential for targeting the vesicles to the cell membrane. Further, systematic deletion of amino acid residues from N- and C-terminus demonstrated that N-terminal 203 amino acids are dispensable for the vesicle formation. On the other hand, the C-terminal coiled coil domain when expressed alone could also form vesicles. These results suggest that GBNV NSm remodels the ER network by forming vesicles via its interaction through the C-terminal coiled coil domain. Interestingly, NSm interacts with NP in vitro and coexpression of these two proteins in planta resulted in the relocalization of NP to PD and this relocalization was abolished when the N-terminal unfolded region of NSm was deleted. Thus, the NSm interacts with NP via its N-terminal unfolded region and the NSm-NP complex could in turn interact with the ER membrane via the C-terminal coiled coil domain of NSm to form vesicles that are targeted to PD and there by assist the cell to cell movement of the viral genome complex. (C) 2015 Elsevier Inc. All rights reserved.

Strength model for end cover separation failure in RC beams strengthened with near-surface mounted (NSM) FRP strips

As an alternative to externally bonded FRP reinforcement, near-surface mounted (NSM) FRP reinforcement can be used to effectively improve the flexural performance of RC beams. In such FRP strengthened RC beams, end cover separation failure is one of the common failure modes. This failuremode involves the detachment of the NSM FRP reinforcement together with the concrete cover along the level of the tension steel reinforcement. This paper presents a new strength model for end cover separation failure in RC beams strengthened in flexure with NSM FRP strips (i.e. rectangular FRP bars with asectional height-to-thickness ratio not less than 5), which was formulated on the basis of extensive numerical results from a parametric study undertaken using an efficient finite element approach. The proposed strength model consists of an approximate equation for the debonding strain of the FRP reinforcement at the critical cracked section and a conventional section analysis to relate this debondingstrain to the moment acting on the same section (i.e. the debonding strain). Once the debonding strain is known, the load level at end cover separation of an FRP-strengthened RC beam can be easily determined for a given load distribution. Predictions from the proposed strength model are compared with those of two existing strength models of the same type and available test results, which shows that the proposed strength model is in close agreement with test results and is far more accurate than the existing strength models.

Bond behavior of NSM FRP strips between two adjacent cracks in concrete beams: A numerical study

Strengthening RC structures with near-surface mounted (NSM) fibre reinforced polymer (FRP) composites has a number of advantages compared with that with externally bonded (EB) FRP sheets/plates. As with EB FRP, the performance of the bond between NSM FRP and concrete is one of the key factors affecting the behaviour of the strengthened structure. This paper presents a numerical investigation into the behaviour of NSM FRP loaded at its both ends to simulate the NSM FRP-toconcrete bond between two adjacent cracks in RC members. The main objective of this study is to quantitatively clarify the effect of the bondline damage during slip reversal on the ultimate load (bond strength). The results show that the bondline damage has a significant effect on the load-carrying capacity of the NSM FRP-to-concrete bonded interface and should be considered in FE modeling of the interface.

Novel manually made NSM FRP (MMFRP) bars for shear strengthening of RC beams

This paper presents an experimental study evaluating the effectiveness of the Near Surface Mounted (NSM) technique with innovative manually made FRP bars (MMFRP) for shear strengthening of RC beams. RC beams designed to fail in shear were tested in three-point bending. To delay the onset of MMFRP bar debonding, a new anchorage is also developed and tested. This paper reports the results of a series of tests on simply supported rectangular RC beams, strengthened in shear with MMFRP bar either with or without the proposed anchorage. The load-deflection responses of all test beams are plotted, in addition to selected strain results. Performance and the failure modes of the test beams are presented and discussed in this paper. The proposed MMFRP bars and end anchorage enhanced the shear capacity between 25 to 48% over the control specimen. Furthermore, the adoption of the proposed end anchorage of MMFRP bars significantly enhanced the ductility of the test specimens.

A new method for continuous quality control of nsm cfrp systems

In the last decade the near-surface mounted (NSM) strengthening technique using carbon fibre reinforced polymers (CFRP) has been increasingly used to improve the load carrying capacity of concrete members. Compared to externally bonded reinforcement (EBR), the NSM system presents considerable advantages. This technique consists in the insertion of carbon fibre reinforced polymer laminate strips into pre-cut slits opened in the concrete cover of the elements to be strengthened. CFRP reinforcement is bonded to concrete with an appropriate groove filler, typically epoxy adhesive or cement grout. Up to now, research efforts have been mainly focused on several structural aspects, such as: bond behaviour, flexural and/or shear strengthening effectiveness, and energy dissipation capacity of beam-column joints. In such research works, as well as in field applications, the most widespread adhesives that are used to bond reinforcements to concrete are epoxy resins. It is largely accepted that the performance of the whole application of NSM systems strongly depends on the mechanical properties of the epoxy resins, for which proper curing conditions must be assured. Therefore, the existence of non-destructive methods that allow monitoring the curing process of epoxy resins in the NSM CFRP system is desirable, in view of obtaining continuous information that can provide indication in regard to the effectiveness of curing and the expectable bond behaviour of CFRP/adhesive/concrete systems. The experimental research was developed at the Laboratory of the Structural Division of the Civil Engineering Department of the University of Minho in Guimar\~aes, Portugal (LEST). The main objective was to develop and propose a new method for continuous quality control of the curing of epoxy resins applied in NSM CFRP strengthening systems. This objective is pursued through the adaptation of an existing technique, termed EMM-ARM (Elasticity Modulus Monitoring through Ambient Response Method) that has been developed for monitoring the early stiffness evolution of cement-based materials. The experimental program was composed of two parts: (i) direct pull-out tests on concrete specimens strengthened with NSM CFRP laminate strips were conducted to assess the evolution of bond behaviour between CFRP and concrete since early ages; and, (ii) EMM-ARM tests were carried out for monitoring the progressive stiffness development of the structural adhesive used in CFRP applications. In order to verify the capability of the proposed method for evaluating the elastic modulus of the epoxy, static E-Modulus was determined through tension tests. The results of the two series of tests were then combined and compared to evaluate the possibility of implementation of a new method for the continuous monitoring and quality control of NSM CFRP applications.

Método para el refuerzo a flexión de vigas de hormigón armado con barras de fibra de carbono en configuración NSM pretensadas

El refuerzo de elementos estructurales sometidos a flexión mediante la utilización de barras (FRP) pretensadas es una técnica novedosa. En el presente trabajo se describe una nueva técnica para efectuar dicho pretensado. Se describen además los resultados obtenidos en una campaña de ensayos con 9 vigas: 3 probetas sin refuerzo, 3 probetas con refuerzo pasivo y 3 probetas con refuerzo activo. Para conseguir una rotura a flexión las vigas fueron reforzadas a cortante con unos anillos de tejido de fibra de carbono. La rotura de las vigas testigo fue dúctil, y las vigas reforzadas rompieron a cortante de forma explosiva. El pretensado de los elementos de refuerzo permitió incrementar la capacidad resistente de las vigas un 170% respecto de la viga testigo, produciéndose además un aumento en la rigidez de los elementos reforzados y una disminución en la fisuración de la viga. Se detectaron deficiencias en la técnica de refuerzo empleada, derivadas principalmente del método de aplicación del adhesivo estructural, que se propone mejorar en próximos trabajos.

Modelización tridimensional de ensayos de adherencia tipo viga del refuerzo NSM-FRP en hormigón

El uso de refuerzos NSM‐FRP en estructuras de hormigón armado se ha incrementado considerablemente en los últimos años como método de refuerzo estructural. Los ensayos de arrancamiento en viga de los refuerzos NSM‐FRP permiten el estudio del comportamiento de la unión pegada. El principal objetivo del presente trabajo aborda la simulación numérica de este tipo de ensayos, con el propósito de caracterizar correctamente la adherencia entre las barras de NSM‐FRP y el hormigón. En una fase inicial se simuló un modelo bidimensional para conseguir evaluar y verificar el comportamiento de los elementos cohesivos y ver su comportamiento primero ante diferentes modelos de material y segundo ante un modo mixto de fallo, debido a la aplicación simultanea de carga axial y carga cortante. En una segunda fase se creó un modelo tridimensional para estudiar el arrancamiento de una barra de material compuesto insertada en hormigón, creando un modelo de material de hormigón y viendo el comportamiento cualitativo del sistema ante variaciones en los parámetros de los diferentes materiales. En la tercera fase, la más importante del presente trabajo, se abordó la simulación numérica del ensayo de arrancamiento en viga. Se simularon todos los componentes del ensayo y se evaluaron diferentes alternativas para representar la interfase NSM‐FRP ‐ hormigón, usando elementos cohesivos y diferentes distribuciones de los mismos en la interfase. Para conseguir representar lo más fielmente posible las condiciones del ensayo, se diseñó también un controlador PID que permite realizar las simulaciones numéricas mediante un control en desplazamientos, lo cual permite capturar más correctamente el comportamiento de reblandecimiento de la unión pegada. El controlador PID aplica técnicas de ingeniería de control para conseguir calcular a priori la amplitud necesaria del desplazamiento impuesto que provoque una evolución establecida en una variable interna del sistema. La variable usada para correlacionar los ensayos es la diferencia en desplazamientos entre dos puntos y se escoge una evolución lineal de la misma, pero en la tesis también se exponen los resultados de escoger otras posibles variables internas con diferentes evoluciones. Se compararon las simulaciones numéricas con resultados de mediciones experimentales previamente publicadas. Los resultados carga‐deslizamiento obtenidos encajan bien con los datos experimentales. El modelo propuesto es también capaz de predecir el modo de fallo en la interfase NSM‐FRP ‐ hormigón. Finalmente, también se han llevado a cabo estudios paramétricos, para evaluar la influencia de cada parámetro en los resultados. También se realizó un estudio cualitativo de cómo se comporta la unión pegada en cada momento de la simulación, mediante el uso macros y gráficas tridimensionales, para conseguir una mejor visualización y facilitar el análisis de los resultados. ABSTRACT The use of near‐surface mounted FRP reinforcement in reinforced concrete structures has seen a considerable increase in recent years as a strengthening method. Beam pull‐out tests for near‐surface reinforcement allow obtaining the local bond‐slip behavior of a bonded joint. The main objective of the current work deals with the three‐dimensional modeling of this kind of test with the purpose of characterizing suitably the mechanics of bond between FRP rods and concrete. In an initial stage, a two bidimensional in order to evaluate and to verify the behavior of the cohesive elements. Its behavior was evaluated first testing different material models and second testing the behavior when mixed mode failure appears, due to simultaneous axial and shear load. In a second stage a tridimensional model was created in order to study the pull‐out of an inserted beam of composite material in concrete. A concrete material model was created and the influence of each material parameter was studied qualitatively. The third part, the most relevant of the present work, the numerical simulation of the Beam Pull‐Out test was faced. All the parts of the Beam Pull‐Out test were included inthe simulation and different alternatives to represent the FRP bar – concrete interface have been evaluated, using cohesive elements and different distributions of them. In order to reproduce the test conditions more reliably, a PID controller has also been designed to conduct suitably the numerical tests in order to properly capture the softening branch of the load‐slip behaviour. The PID controller applies control techniques to calculate a priori the necessary amplitude of the load in order to achieve a given evolution through the simulation of an internal variable previously chosen. The variable used in order to correlate the simulation with the test results is the difference in displacements between two points and a linear evolution was chosen, but in the thesis the results of choosing other possible internal variables with different evolutions are also shown. The numerical FE simulations were compared with experimental measurements previously published. Load‐slip predictions compare well with the corresponding experimental data. The proposed model is also able to predict the failure mode at the FRP‐concrete interface. Some parametric studies have also been carried out, in order to evaluate the influence of each material parameter in the results. A qualitative study of the behaviour of the joint was also performed, using the results of the numeric simulations and through the use of macros and 3D graphs, the tensional state of each point of the joint can be visualized in each moment of the simulation.

Fluid-structure interaction analysis of full scale vehicle-barrier impact using coupled SPH-FEA

Portable water-filled barriers (PWFB) are roadside structures used to separate moving traffic from work-zones. Numerical PWFB modelling is preferred in the design stages prior to actual testing. This paper aims to study the fluid-structure interaction of PWFB under vehicular impact using several methods. The strategy to treat water as non-structural mass was proposed and the errors were investigated. It was found that water can be treated with the FEA-NSM model for velocities higher than 80kmh-1. However, full SPH/FEA model is still the best treatment for water and necessary for lower impact velocities. The findings in this paper can be used as guidelines for modelling and designing PWFB.

In planta localization and interactions of impatiens necrotic spot tospovirus proteins

Impatiens necrotic spot tospovirus (INSV) is a significant pathogen of ornamentals. The tripartite negative- and ambi-sense RNA genome encodes six proteins that are involved in cytoplasmic replication, movement, assembly, insect transmission and defence. To gain insight into the associations of these viral proteins, we determined their intracellular localization and interactions in living plant cells. Nucleotide sequences encoding the nucleoprotein N, non-structural proteins NSs and NSm, and glycoproteins Gn and Gc of a Kentucky isolate of INSV were amplified by RTPCR, cloned, sequenced and transiently expressed as fusions with autofluorescent proteins in leaf epidermal cells of Nicotiana benthamiana. All proteins accumulated at the cell periphery and co-localized with an endoplasmic reticulum marker. The Gc protein fusion also localized to the nucleus. N and NSm protein self-interactions and an NSm-N interaction were observed by using bimolecular fluorescence complementation. A tospovirus NSm homotypic interaction had not been reported previously.

First complete genome sequence of a capsicum chlorosis tospovirus isolate from Australia with an unusually large S RNA intergenic region

The first complete genome sequence of capsicum chlorosis virus (CaCV) from Australia was determined using a combination of Illumina HiSeq RNA and Sanger sequencing technologies. Australian CaCV had a tripartite genome structure like other CaCV isolates. The large (L) RNA was 8913 nucleotides (nt) in length and contained a single open reading frame (ORF) of 8634 nt encoding a predicted RNA-dependent RNA polymerase (RdRp) in the viral-complementary (vc) sense. The medium (M) and small (S) RNA segments were 4846 and 3944 nt in length, respectively, each containing two non-overlapping ORFs in ambisense orientation, separated by intergenic regions (IGR). The M segment contained ORFs encoding the predicted non-structural movement protein (NSm; 927 nt) and precursor of glycoproteins (GP; 3366 nt) in the viral sense (v) and vc strand, respectively, separated by a 449-nt IGR. The S segment coded for the predicted nucleocapsid (N) protein (828 nt) and non-structural suppressor of silencing protein (NSs; 1320 nt) in the vc and v strand, respectively. The S RNA contained an IGR of 1663 nt, being the largest IGR of all CaCV isolates sequenced so far. Comparison of the Australian CaCV genome with complete CaCV genome sequences from other geographic regions showed highest sequence identity with a Taiwanese isolate. Genome sequence comparisons and phylogeny of all available CaCV isolates provided evidence for at least two highly diverged groups of CaCV isolates that may warrant re-classification of AIT-Thailand and CP-China isolates as unique tospoviruses, separate from CaCV.