On Ribosome Load, Codon Bias and Protein Abundance

Different codons encoding the same amino acid are not used equally in protein-coding sequences. In bacteria, there is a bias towards codons with high translation rates. This bias is most pronounced in highly expressed proteins, but a recent study of synthetic GFP-coding sequences did not find a correlation between codon usage and GFP expression, suggesting that such correlation in natural sequences is not a simple property of translational mechanisms. Here, we investigate the effect of evolutionary forces on codon usage. The relation between codon bias and protein abundance is quantitatively analyzed based on the hypothesis that codon bias evolved to ensure the efficient usage of ribosomes, a precious commodity for fast growing cells. An explicit fitness landscape is formulated based on bacterial growth laws to relate protein abundance and ribosomal load. The model leads to a quantitative relation between codon bias and protein abundance, which accounts for a substantial part of the observed bias for E. coli. Moreover, by providing an evolutionary link, the ribosome load model resolves the apparent conflict between the observed relation of protein abundance and codon bias in natural sequences and the lack of such dependence in a synthetic gfp library. Finally, we show that the relation between codon usage and protein abundance can be used to predict protein abundance from genomic sequence data alone without adjustable parameters.

On Ribosome Load, Codon Bias and Protein Abundance

Different codons encoding the same amino acid are not used equally in protein-coding sequences. In bacteria, there is a bias towards codons with high translation rates. This bias is most pronounced in highly expressed proteins, but a recent study of synthetic GFP-coding sequences did not find a correlation between codon usage and GFP expression, suggesting that such correlation in natural sequences is not a simple property of translational mechanisms. Here, we investigate the effect of evolutionary forces on codon usage. The relation between codon bias and protein abundance is quantitatively analyzed based on the hypothesis that codon bias evolved to ensure the efficient usage of ribosomes, a precious commodity for fast growing cells. An explicit fitness landscape is formulated based on bacterial growth laws to relate protein abundance and ribosomal load. The model leads to a quantitative relation between codon bias and protein abundance, which accounts for a substantial part of the observed bias for E. coli. Moreover, by providing an evolutionary link, the ribosome load model resolves the apparent conflict between the observed relation of protein abundance and codon bias in natural sequences and the lack of such dependence in a synthetic gfp library. Finally, we show that the relation between codon usage and protein abundance can be used to predict protein abundance from genomic sequence data alone without adjustable parameters.

The contribution model:a school-level funding model

Over a number of years, as the Higher Education Funding Council for England (HEFCE)'s funding models became more transparent, Aston University was able to discover how its funding for teaching and research was calculated. This enabled calculations to be made on the funds earned by each school in the University, and Aston Business School (ABS) in turn to develop models to calculate the funds earned by its programmes and academic groups. These models were a 'load' and a 'contribution' model. The 'load' model records the weighting of activities undertaken by individual members of staff; the 'contribution' model is the means by which funds are allocated to academic units. The 'contribution' model is informed by the 'load' model in determining the volume of activity for which each academic unit is to be funded.

A critique of a model for an academic staff activity database developed to aid a department in strategic and operational decision making

This paper discusses the use of a Model developed by Aston Business School to record the work load of its academic staff. By developing a database to register annual activity in all areas of teaching, administration and research the School has created a flexible tool which can be used for facilitating both day-to-day managerial and longer term strategic decisions. This paper gives a brief outline of the Model and discusses the factors which were taken into account when setting it up. Particular attention is paid to the uses made of the Model and the problems encountered in developing it. The paper concludes with an appraisal of the Model’s impact and of additional developments which are currently being considered. Aston Business School has had a Load Model in some form for many years. The Model has, however, been refined over the past five years, so that it has developed into a form which can be used for a far greater number of purposes within the School. The Model is coordinated by a small group of academic and administrative staff, chaired by the Head of the School. This group is responsible for the annual cycle of collecting and inputting data, validating returns, carrying out analyses of the raw data, and presenting the mater ial to different sections of the School. The authors of this paper are members of this steer ing group.

Análise comparativa das ações do tráfego rodoviário definidas em diversos regulamentos internacionais de pontes

O presente trabalho pretende avaliar as diferenças de efeitos que os modelos de sobrecarga rodoviária de dez regulamentos (RSA, EC1-2, NBR, AASHTO, SATCC, CSA, IRC:6, SNiP, Manual de Hong Kong, NCP) provocam em pontes rodoviárias de pequeno a médio vão. Numa primeira parte são cobertas questões relacionadas com os efeitos dinâmicos em pontes referenciando-se diversos estudos. Em seguida são apresentados os principais fatores que influenciam os efeitos das sobrecargas rodoviárias. Os modelos de sobrecarga rodoviária, definidos nos diversos regulamentos, são descritos pormenorizadamente com o objetivo de clarificar e facilitar a sua aplicação. No que se refere à componente numérica do trabalho, a quantificação dos efeitos que cada modelo origina foi realizada através da modelação em elementos finitos de tabuleiros de comprimento variável entre 10 e 40 metros. Longitudinalmente analisaram-se os valores máximos do momento fletor e do esforço transverso, e numa análise transversal estudaram-se os valores máximos de momentos fletores positivos e negativos originados em cada tabuleiro. No capítulo 7 é realizada uma análise comparativa dos efeitos causados pelos modelos de sobrecarga rodoviária definidos em cada regulamento tomando como referência os valores obtidos pelo RSA.

Epidemiology and genetics of endemic goiter. II. Genetic aspects

Complex genetic models and segregation analysis were applied to family data obtained in a hyperendemic goiter area in Brazil. The single locus and Falconer's models did not fit the data. Edward's model showed convergency, but statistical concordance has not been obtained. Although the genetic load model explains statistically the family data, it would be hard to imagine that endemic goiter could be explained by a model where synergism among genetic and environmental factors is not assumed.

Reconfiguração de redes de distribuição de energia elétrica através de um algoritmo de busca dispersa

Pós-graduação em Engenharia Elétrica - FEIS

Photoelastic Analysis of Stress Distribution With Different Implant Systems

The aim of this study was to evaluate stress distribution with different implant systems through photoelasticity. Five models were fabricated with photoelastic resin PL-2. Each model was composed of a block of photoelastic resin (10 x 40 x 45 mm) with an implant and a healing abutment: model 1, internal hexagon implant (4.0 X 10 mm; Conect AR, Conexao, Sao Paulo, Brazil); model 2, Morse taper/internal octagon implant (4.1 x 10 mm; Standard, Straumann ITI, Andover, Mass); model 3, Morse taper implant (4.0 x 10 mm; AR Morse, Conexao); model 4, locking taper implant (4.0 x 11 mm; Bicon, Boston, Mass); model 5, external hexagon implant (4.0 x 10 mm; Master Screw, Conexao). Axial and oblique load (45) of 150 N were applied by a universal testing machine (EMIC-DL 3000), and a circular polariscope was used to visualize the stress. The results were photographed and analyzed qualitatively using Adobe Photoshop software. For the axial load, the greatest stress concentration was exhibited in the cervical and apical thirds. However, the highest number of isochromatic fringes was observed in the implant apex and in the cervical adjacent to the load direction in all models for the oblique load. Model 2 (Morse taper, internal octagon, Straumann ITI) presented the lowest stress concentration, while model 5 (external hexagon, Master Screw, Conexao) exhibited the greatest stress. It was concluded that Morse taper implants presented a more favorable stress distribution among the test groups. The external hexagon implant showed the highest stress concentration. Oblique load generated the highest stress in all models analyzed.

Strain rates estimated by geodetic observations in the Borborema Province, Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Reconfiguration of radial electric power distribution system via a scatter search algorithm

In this paper, to solve the reconfiguration problem of radial distribution systems a scatter search, which is a metaheuristic-based algorithm, is proposed. In the codification process of this algorithm a structure called node-depth representation is used. It then, via the operators and from the electrical power system point of view, results finding only radial topologies. In order to show the effectiveness, usefulness, and the efficiency of the proposed method, a commonly used test system, 135-bus, and a practical system, a part of Sao Paulo state's distribution network, 7052 bus, are conducted. Results confirm the efficiency of the proposed algorithm that can find high quality solutions satisfying all the physical and operational constraints of the problem.

Women's subjective and objective health over time : the role of psychosocial conditions and physiological stress responses

Today, health problems are likely to have a complex and multifactorial etiology, whereby psychosocial factors interact with behaviour and bodily responses. Women generally report more health problems than men. The present thesis concerns the development of women’s health from a subjective and objective perspective, as related to psychosocial living conditions and physiological stress responses. Both cross-sectional and longitudinal studies were carried out on a representative sample of women. Data analysis was based on a holistic person-oriented approach as well as a variable approach. In Study I, the women’s self-reported symptoms and diseases as well as self-rated general health status were compared to physician-rated health problems and ratings of the general health of the women, based on medical examinations. The findings showed that physicians rated twice as many women as having poor health compared to the ratings of the women themselves. Moreover, the symptom ”a sense of powerlessness” had the highest predictive power for self-rated general health. Study II investigated individual and structural stability in symptom profiles between adolescence and middle-age as related to pubertal timing. There was individual stability in symptom reporting for nearly thirty years, although the effect of pubertal timing on symptom reporting did not extend into middle-age. Study III explored the longitudinal and current influence of socioeconomic and psychosocial factors on women’s self-reported health. Contemporary factors such as job strain, low income, financial worries, and double exposure in terms of high job strain and heavy domestic responsibilities increased the risk for poor self-reported health in middle-aged women. In Study IV, the association between self-reported symptoms and physiological stress responses was investigated. Results revealed that higher levels of medically unexplained symptoms were related to higher levels of cortisol, cholesterol, and heart rate. The empirical findings are discussed in relation to existing models of stress and health, such as the demand-control model, the allostatic load model, the biopsychosocial model, and the multiple role hypothesis. It was concluded that women’s health problems could be reduced if their overall life circumstances were improved. The practical implications of this might include a redesign of the labour market giving women more influence and control over their lives, both at and away from work.

MULTIDIMENSIONAL OPTIMAL DROOP CONTROL FOR WIND RESOURCES IN DC MICROGRIDS

Two important and upcoming technologies, microgrids and electricity generation from wind resources, are increasingly being combined. Various control strategies can be implemented, and droop control provides a simple option without requiring communication between microgrid components. Eliminating the single source of potential failure around the communication system is especially important in remote, islanded microgrids, which are considered in this work. However, traditional droop control does not allow the microgrid to utilize much of the power available from the wind. This dissertation presents a novel droop control strategy, which implements a droop surface in higher dimension than the traditional strategy. The droop control relationship then depends on two variables: the dc microgrid bus voltage, and the wind speed at the current time. An approach for optimizing this droop control surface in order to meet a given objective, for example utilizing all of the power available from a wind resource, is proposed and demonstrated. Various cases are used to test the proposed optimal high dimension droop control method, and demonstrate its function. First, the use of linear multidimensional droop control without optimization is demonstrated through simulation. Next, an optimal high dimension droop control surface is implemented with a simple dc microgrid containing two sources and one load. Various cases for changing load and wind speed are investigated using simulation and hardware-in-the-loop techniques. Optimal multidimensional droop control is demonstrated with a wind resource in a full dc microgrid example, containing an energy storage device as well as multiple sources and loads. Finally, the optimal high dimension droop control method is applied with a solar resource, and using a load model developed for a military patrol base application. The operation of the proposed control is again investigated using simulation and hardware-in-the-loop techniques.

Measurements and Prediction of Pedestrian Walking Loads on an Aluminium Catwalk

During the last two decades the topic of human induced vibration has attracted a lot of attention among civil engineering practitioners and academics alike. Usually this type of problem may be encountered in pedestrian footbridges or floors of paperless offices. Slender designs are becoming increasingly popular, and as a consequence, the importance of paying attention to vibration serviceability also increases. This paper resumes the results obtained from measurements taken at different points of an aluminium catwalk which is 6 m in length by 0.6 m in width. Measurements were carried out when subjecting the structure to different actions:1)Static test: a steel cylinder of 35 kg was placed in the middle of the catwalk; 2)Dynamic test: this test consists of exciting the structure with singles impulses; 3)Dynamic test: people walking on the catwalk. Identification of the mechanical properties of the structure is an achievement of the paper. Indirect methods were used to estimate properties including the support stiffness, the beam bending stiffness, the mass of the structure (using Rayleigh method and iterative matrix method), the natural frequency (using the time domain and frequency domain analysis) and the damping ratio (by calculating the logarithmic decrement). Experimental results and numerical predictions for the response of an aluminium catwalk subjected to walking loads have been compared. The damping of this light weight structure depends on the amplitude of vibration which complicates the tuning of a structural model. In the light of the results obtained it seems that the used walking load model is not appropriate as the predicted transient vibration values (TTVs) are much higher than the measured ones.

Acciones humanas sobre estructuras

En esta tesis se propone un nuevo modelo de carga para caracterizar los saltos de personas sobre estructuras y se estudia la influencia de las personas en las propiedades dinámicas de la estructura. En el estudio del comportamiento estructural de construcciones como gimnasios, salas de baile, estadios, auditorios o pasarelas peatonales sometidas a cargas producidas por un gran número de personas, se deben tener en cuenta las fuerzas dinámicas, lo cual implica el uso de modelos de cálculo más complejos y criterios de dimensionamiento con nuevos parámetros. Por ello, es necesario determinar a qué cargas van a estar sometidas este tipo de estructuras y cómo van a cambiar cuando se encuentren ocupadas por personas. En la primera parte del trabajo se presenta el problema de considerar las fuerzas dinámicas en el análisis de estructuras. Se indican los factores que influyeron en el interés por este tipo de estudios. Se exponen los objetivos de la tesis y se propone la metodología para conseguirlos. También en esta primera parte se describe el estado del arte. Se explican los modelos existentes de carga generada por saltos de personas y se hace un repaso de los principales autores y estudios sobre este tema. Por último se exponen algunas ideas sobre las modificaciones dinámicas que provoca la presencia de las personas en las estructuras. En la segunda parte de la tesis se explica el modelo de carga de saltos propuesta en este trabajo, donde se incluye una campaña de ensayos con saltos sobre una placa de carga. Se describen las estructuras de ensayo, un gimnasio y una losa que cubre un aljibe. Se detalla la identificación de las propiedades dinámicas de las estructuras, describiendo los ensayos correspondientes y los resultados de un Análisis Operacional Modal. Por último se presenta el modelo de elementos finitos de la estructura elegida para los ensayos. En la tercera y última parte del trabajo se comprueba la validez de los modelos de carga estudiados mediante la realización de ensayos dinámicos con personas saltando y la posterior comparación de los resultados experimentales con las simulaciones numéricas. Como último resultado se estudia la influencia de las personas en las propiedades dinámicas de la estructura. Para ello se utilizan los datos obtenidos mediante un ensayo con personas pasivas. ABSTRACT In this thesis, a new load model is proposed to characterize people jumping on structures and the influence of people in the dynamic properties of the structure is studied. In the study of the structural behavior of buildings such as gymnasiums, dance halls, stadiums, auditoriums or footbridges subjected to loads generated by crowd, dynamic forces must take into account, which involves the use of more complex calculation models and dimensioning criteria with new parameters. Therefore, it is necessary to determine these dynamic loads and how structures will change when they are occupied by people. In the first part of the work the problem of considering the dynamic forces in the analysis of structures is presented. The factors that influence on the interest in this type of study are indicated. The objectives of the thesis are presented and also the proposed methodology in order to achieve them. In this first part the state of the art is described. Existing jumping load models are explained and a review of the main authors and studies on this subject is done. Finally some ideas about the dynamic changes caused by the presence of people in the structures are exposed. In the second part of the thesis the proposed jumping load model is explained, including jump tests on a force plate. Test structures, a gym and a concrete slab are described. Dynamic properties identification of the test structures is detailed with the corresponding tests and Operational Modal Analysis results. Finally, a finite element model of the structure chosen for the tests is presented. In the third part of the work, the studied jump load models are validated by performing dynamic testing with people jumping and the subsequent comparison of experimental results with numerical simulations. As a last result, the influence of people on the dynamic properties of the structure is checked. For this purpose, obtained data from a test with passive people are used.