Fluorescence and reflectance spectroscopy for identification of atherosclerosis in human carotid arteries using principal components analysis

Objectives: The aim of this work was to verify the differentiation between normal and pathological human carotid artery tissues by using fluorescence and reflectance spectroscopy in the 400- to 700-nm range and the spectral characterization by means of principal components analysis. Background Data: Atherosclerosis is the most common and serious pathology of the cardiovascular system. Principal components represent the main spectral characteristics that occur within the spectral data and could be used for tissue classification. Materials and Methods: Sixty postmortem carotid artery fragments (26 non-atherosclerotic and 34 atherosclerotic with non-calcified plaques) were studied. The excitation radiation consisted of a 488-nm argon laser. Two 600-mu m core optical fibers were used, one for excitation and one to collect the fluorescence radiation from the samples. The reflectance system was composed of a halogen lamp coupled to an excitation fiber positioned in one of the ports of an integrating sphere that delivered 5 mW to the sample. The photo-reflectance signal was coupled to a 1/4-m spectrograph via an optical fiber. Euclidean distance was then used to classify each principal component score into one of two classes, normal and atherosclerotic tissue, for both fluorescence and reflectance. Results: The principal components analysis allowed classification of the samples with 81% sensitivity and 88% specificity for fluorescence, and 81% sensitivity and 91% specificity for reflectance. Conclusions: Our results showed that principal components analysis could be applied to differentiate between normal and atherosclerotic tissue with high sensitivity and specificity.

Broad spectrum bioactive sunscreens

The development of sunscreens containing reduced concentration of chemical UV filters, even though, possessing broad spectrum effectiveness with the use of natural raw materials that improve and infer UV absorption is of great interest. Due to the structural similarities between polyphenolic compounds and organic UV filters, they might exert photoprotection activity. The objective of the present research work was to develop bioactive sunscreen delivery systems containing rutin, Passiflora incarnata L. and Plantago lanceolata extracts associated or not with organic and inorganic UV filters. UV transmission of the sunscreen delivery system films was performed by using diffuse transmittance measurements coupling to an integrating sphere. In vitro photoprotection efficacy was evaluated according to the following parameters: estimated sun protection factor (SPF); Boot`s Star Rating category; UVA/UVB ratio; and critical wavelength (lambda(c)). Sunscreen delivery systems obtained SPF values ranging from 0.972 +/- 0.004 to 28.064 +/- 2.429 and bioactive compounds interacted with the UV filters positive and negatively. This behavior may be attributed to: the composition of the delivery system: the presence of inorganic UV filter and quantitative composition of the organic UV filters; and the phytochemical composition of the P. incarnate L and P. lanceolato extracts. Among all associations of bioactive compounds and UV filters, we found that the broad spectrum sunscreen was accomplished when 1.68% (w/w) P incarnata L. dry extract was in the presence of 7.0% (w/w) ethylhexyl methoxycinnamate, 2.0% (w/w) benzophenone-3 and 2.0% (w/w) TiO(2). It was demonstrated that this association generated estimated SPF of 20.072 +/- 0.906 and it has improved the protective defense against UVA radiation accompanying augmentation of the UVA/UVB ratio from 0.49 to 0.52 and lambda(c) from 364 to 368.6 nm. (c) 2008 Elsevier B.V. All rights reserved.

Determination of the optical properties of plastic films used as cladding materials in novel energy efficient greenhouses

Greenhouse cladding materials are a major component in the design of energy efficient greenhouses. The optical properties of cladding materials determine a major part of the overall performance of a greenhouse both in terms of the energy balance of the greenhouse and on crop behavior. Various film plastic greenhouse-cladding materials were measured under laboratory conditions using a spectroradiometer equipped with an integrating sphere. Films were measured over a range of angles of incidence and the effect of increasing distance between double films was also measured. PAR transmission remained nearly constant for angles of incidence increased up to 30 degrees but fell rapidly thereafter as the angles of incidence increased up to 90 degrees. Increasing distance between double films did not significantly affect PAR transmission in all films examined. These results are discussed in relation to the design criteria for an energy efficient greenhouse.

Composição de cores através da calibração radiométrica e fotométrica de LEDs: Teoria e experimento

In the present work, the basic concepts of radiometric, photometric and colorimetric calibration are presented, which were applied to three light-emitting diodes (LEDs) used to compose the different color sensations that the human eye perceives in the visible region of the electromagnetic spectrum. In this sense, an experimental setup comprising a LED drive circuit and a home-made integrating sphere was assembled for the initial radiometric and photometric calibration as well as to obtain a set of intensity and spectral combinations associated to different colorimetric CIE (Commission Internationale de l'Eclairage) coordinates. The reader can, therefore, understand, in a simple manner, the process of color composition inside a color monitor or display picture element (pixel ). © Sociedade Brasileira de Física.

Microsensor measurements in photosynthetic microbial mats

Based on combined microsensor measurements of irradiance, temperature and O2, we compared light energy budgets in photosynthetic microbial mats, with a special focus on the efficiency of light energy conservation by photosynthesis. The euphotic zones in the three studied mats differed in their phototrophic community structure, pigment concentrations and thickness. In all mats, < 1% of the absorbed light energy was conserved via photosynthesis at high incident irradiance, while the rest was dissipated as heat. Under light-limiting conditions, the photosynthetic efficiency reached a maximum, which varied among the studied mats between 4.5% and 16.2% and was significantly lower than the theoretical maximum of 27.7%. The maximum efficiency correlated linearly with the light attenuation coefficient and photopigment concentration in the euphotic zone. Higher photosynthetic efficiency was found in mats with a thinner and more densely populated euphotic zone. Microbial mats exhibit a lower photosynthetic efficiency compared with ecosystems with a more open canopy-like organization of photosynthetic elements, where light propagation is not hindered to the same extent by photosynthetically inactive components; such components contributed about 40-80% to light absorption in the investigated microbial mats, which is in a similar range as in oceanic planktonic systems.

Estudo de camadas anti-reflectoras para células solares

Trabalho de projecto de mestrado, Engenharia da Energia e Ambiente, Universidade de Lisboa, Faculdade de Ciências, 2016

Évaluation de la modélisation de la taille de grain de neige du modèle multi-couches thermodynamique SNOWPACK: implication dans l'évaluation des risques d'avalanches

Résumé: L’Institut pour l'étude de la neige et des avalanches en Suisse (SLF) a développé SNOWPACK, un modèle thermodynamique multi-couches de neige permettant de simuler les propriétés géophysiques du manteau neigeux (densité, température, taille de grain, teneur en eau, etc.) à partir desquelles un indice de stabilité est calculé. Il a été démontré qu’un ajustement de la microstructure serait nécessaire pour une implantation au Canada. L'objectif principal de la présente étude est de permettre au modèle SNOWPACK de modéliser de manière plus réaliste la taille de grain de neige et ainsi obtenir une prédiction plus précise de la stabilité du manteau neigeux à l’aide de l’indice basé sur la taille de grain, le Structural Stability Index (SSI). Pour ce faire, l’erreur modélisée (biais) par le modèle a été analysée à l’aide de données précises sur le terrain de la taille de grain à l’aide de l’instrument IRIS (InfraRed Integrated Sphere). Les données ont été recueillies durant l’hiver 2014 à deux sites différents au Canada : parc National des Glaciers, en Colombie-Britannique ainsi qu’au parc National de Jasper. Le site de Fidelity était généralement soumis à un métamorphisme à l'équilibre tandis que celui de Jasper à un métamorphisme cinétique plus prononcé. Sur chacun des sites, la stratigraphie des profils de densités ainsi des profils de taille de grain (IRIS) ont été complétés. Les profils de Fidelity ont été complétés avec des mesures de micropénétromètre (SMP). L’analyse des profils de densité a démontré une bonne concordance avec les densités modélisées (R[indice supérieur 2]=0.76) et donc la résistance simulée pour le SSI a été jugée adéquate. Les couches d’instabilités prédites par SNOWPACK ont été identifiées à l’aide de la variation de la résistance dans les mesures de SMP. L’analyse de la taille de grain optique a révélé une surestimation systématique du modèle ce qui est en accord avec la littérature. L’erreur de taille de grain optique dans un environnement à l’équilibre était assez constante tandis que l’erreur en milieux cinétique était plus variable. Finalement, une approche orientée sur le type de climat représenterait le meilleur moyen pour effectuer une correction de la taille de grain pour une évaluation de la stabilité au Canada.

Calibração radiométrica de instrumentação óptica espectrofotométrica

Os espectrómetros instalados a bordo de satélites e à superfície da Terra têm desempenhado um papel fundamental na compreensão da química e dinâmica da atmosfera e na monitorização da poluição ambiental. O SPATRAM (SPectrometer for Atmosferic TRAcers Measurements) é um espectrómetro ultravioleta – Visível que compreende a região espectral entre 250-950nm e se encontra instalado no Instituto de Ciências da Terra (ICT) desde Abril de 2004. Enquanto isso, em 2012, um novo modelo do instrumento SPATRAM foi desenvolvido no ICT e foi chamado SPATRAM2. O objectivo do trabalho proposto é a calibração radiométrica do espectrómetro SPATRAM2, utilizando uma lâmpada de halogéneo e uma esfera de integração. A calibração radiométrica do sistema SPATRAM2 permitirá obter a radiação solar directa, com alta resolução espectral, o que actualmente não se encontra disponível. Este tipo de medição poderá ter um papel importante na investigação e desenvolvimento na área da energia solar e aplicações; Radiometric Calibration of Spectrophotometric Optical Instrumentation Abstract: Spectrometers installed aboard satellites and located on Earth’s surface have played a fundamental role to understand atmosphere’s chemistry and dynamic and to monitor environmental pollution. The SPATRAM (SPectrometer for Atmosferic TRAcers Measurements) instrument is an ultraviolet spectrometer – visible that covers spectral region between 250-950nm and it is installed in Instituto de Ciências da Terra (Institute of Earth Sciencies), ICT, since April 2004. Meanwhile, in 2012, a new model of SPATRAM instrument was developed in ICT and was called SPATRAM2. The goal of this project is the radiometric calibration of the SPATRAM2 spectrometer using a halogen lamp and an integrating sphere. Radiometric calibration of SPATRAM2 system will provide direct solar radiation, with high spectral resolution, that is not available nowadays. This type of measurement may play an important role in solar energy’s progress and investigation.

Integrating control systems defined on the frame bundles of the space forms

This paper considers left-invariant control systems defined on the orthonormal frame bundles of simply connected manifolds of constant sectional curvature, namely the space forms Euclidean space E-3, the sphere S-3 and Hyperboloid H-3 with the corresponding frame bundles equal to the Euclidean group of motions SE(3), the rotation group SO(4) and the Lorentz group SO(1, 3). Orthonormal frame bundles of space forms coincide with their isometry groups and therefore the focus shifts to left-invariant control systems defined on Lie groups. In this paper a method for integrating these systems is given where the controls are time-independent. In the Euclidean case the elements of the Lie algebra se(3) are often referred to as twists. For constant twist motions, the corresponding curves g(t) is an element of SE(3) are known as screw motions, given in closed form by using the well known Rodrigues' formula. However, this formula is only applicable to the Euclidean case. This paper gives a method for computing the non-Euclidean screw motions in closed form. This involves decoupling the system into two lower dimensional systems using the double cover properties of Lie groups, then the lower dimensional systems are solved explicitly in closed form.

Iis--integrated Interactome System: A Web-based Platform For The Annotation, Analysis And Visualization Of Protein-metabolite-gene-drug Interactions By Integrating A Variety Of Data Sources And Tools.

High-throughput screening of physical, genetic and chemical-genetic interactions brings important perspectives in the Systems Biology field, as the analysis of these interactions provides new insights into protein/gene function, cellular metabolic variations and the validation of therapeutic targets and drug design. However, such analysis depends on a pipeline connecting different tools that can automatically integrate data from diverse sources and result in a more comprehensive dataset that can be properly interpreted. We describe here the Integrated Interactome System (IIS), an integrative platform with a web-based interface for the annotation, analysis and visualization of the interaction profiles of proteins/genes, metabolites and drugs of interest. IIS works in four connected modules: (i) Submission module, which receives raw data derived from Sanger sequencing (e.g. two-hybrid system); (ii) Search module, which enables the user to search for the processed reads to be assembled into contigs/singlets, or for lists of proteins/genes, metabolites and drugs of interest, and add them to the project; (iii) Annotation module, which assigns annotations from several databases for the contigs/singlets or lists of proteins/genes, generating tables with automatic annotation that can be manually curated; and (iv) Interactome module, which maps the contigs/singlets or the uploaded lists to entries in our integrated database, building networks that gather novel identified interactions, protein and metabolite expression/concentration levels, subcellular localization and computed topological metrics, GO biological processes and KEGG pathways enrichment. This module generates a XGMML file that can be imported into Cytoscape or be visualized directly on the web. We have developed IIS by the integration of diverse databases following the need of appropriate tools for a systematic analysis of physical, genetic and chemical-genetic interactions. IIS was validated with yeast two-hybrid, proteomics and metabolomics datasets, but it is also extendable to other datasets. IIS is freely available online at: http://www.lge.ibi.unicamp.br/lnbio/IIS/.

Metallochlorophylls of magnesium, copper and zinc: evaluation of the influence of the first coordination sphere on their solvatochromism and aggregation properties

In this study the role of different metal centers (magnesium, zinc and copper) on the enhancement of the hydrophilic character of metallochlorophylls, was evaluated. The solvatochromism as well as the aggregation process for these compounds in water/ethanol mixtures at different volume ratios were evaluated using Fluorescence, and Resonant Light Scattering (RLS) measurements, aiming to characterize the behavior of these compounds. Independently on the studied metallochlorophyll, the presence of at least 60% of water results in a considerable increase in the fluorescence emission, probably a direct consequence of a lower aggregation of these compounds, which is confirmed by the results from RLS measurements. Additionally, the results suggest that magnesium and zinc chlorophyll should be promising phototherapeutic agents for Photodynamic Therapy.

THE LOWER CENTRAL AND DERIVED SERIES OF THE BRAID GROUPS OF THE SPHERE

In this paper, we determine the lower central and derived series for the braid groups of the sphere. We are motivated in part by the study of Fadell-Neuwirth short exact sequences, but the problem is important in its own right. The braid groups of the 2-sphere S(2) were studied by Fadell, Van Buskirk and Gillette during the 1960s, and are of particular interest due to the fact that they have torsion elements (which were characterised by Murasugi). We first prove that for all n epsilon N, the lower central series of the n-string braid group B(n)(S(2)) is constant from the commutator subgroup onwards. We obtain a presentation of Gamma(2)(Bn(S(2))), from which we observe that Gamma(2)(B(4)(S(2))) is a semi-direct product of the quaternion group Q(8) of order 8 by a free group F(2) of rank 2. As for the derived series of Bn(S(2)), we show that for all n >= 5, it is constant from the derived subgroup onwards. The group Bn(S(2)) being finite and soluble for n <= 3, the critical case is n = 4 for which the derived subgroup is the above semi-direct product Q(8) (sic) F(2). By proving a general result concerning the structure of the derived subgroup of a semi-direct product, we are able to determine completely the derived series of B(4)(S(2)) which from (B(4)(S(2)))(4) onwards coincides with that of the free group of rank 2, as well as its successive derived series quotients.

Integrating structural and input design of a 2-DOF high-speed parallel manipulator: A flexible model-based approach

This paper discusses the integrated design of parallel manipulators, which exhibit varying dynamics. This characteristic affects the machine stability and performance. The design methodology consists of four main steps: (i) the system modeling using flexible multibody technique, (ii) the synthesis of reduced-order models suitable for control design, (iii) the systematic flexible model-based input signal design, and (iv) the evaluation of some possible machine designs. The novelty in this methodology is to take structural flexibilities into consideration during the input signal design; therefore, enhancing the standard design process which mainly considers rigid bodies dynamics. The potential of the proposed strategy is exploited for the design evaluation of a two degree-of-freedom high-speed parallel manipulator. The results are experimentally validated. (C) 2010 Elsevier Ltd. All rights reserved.