Análise bayesiana do modelo de herança monogênica no melhoramento vegetal: um exemplo com abobrinha

A common breeding strategy is to carry out basic studies to investigate the hypothesis of a single gene controlling the trait (major gene) with or without polygenes of minor effect. In this study we used Bayesian inference to fit genetic additive-dominance models of inheritance to plant breeding experiments with multiple generations. Normal densities with different means, according to the major gene genotype, were considered in a linear model in which the design matrix of the genetic effects had unknown coefficients (which were estimated in individual basis). An actual data set from an inheritance study of partenocarpy in zucchini (Cucurbita pepo L.) was used for illustration. Model fitting included posterior probabilities for all individual genotypes. Analysis agrees with results in the literature but this approach was far more efficient than previous alternatives assuming that design matrix was known for the generations. Partenocarpy in zucchini is controlled by a major gene with important additive effect and partial dominance.

La conservación genética de los endemismos vegetales en el Archipiélago Canario. Situación y perspectivas

Charlas divulgativas 2010-2011

Análisis de la diversidad genética de poblaciones naturales de especies vegetales amenazadas (Silene nocteolens (Caryophyllaceae) y Sorbus aria (Rosaceae)

[ES]La riqueza genética que nos ofrecen las poblaciones naturales de la flora en Canarias puede estar bajo riesgo. Con esto en mente, se desarrollaron marcadores moleculares (SSR) específicos para el análisis genético de Silene nocteolens, una planta herbácea que solo crece en el Teide; y Sorbus aria, 50 árboles que en Canarias están restringidos a Tenerife y La Palma. En S. nocteolens se encontró una gran variabilidad genética, poca diferenciación genética entre sus dos poblaciones y un bajo porcentaje autofecundación. En S. aria se reporta un carácter triploide, menor variabilidad genética en las muestras canarias que en las peninsulares y una diferenciación genética considerablemente alta.

Modelo de distribución y variación genética de especies del género Parmelina a lo largo de un gradiente altitudinal

Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid

Caracterização de frutos, divergência genética e estrutura espacial de jaboticabeiras nativas de fragmento florestal em Clevelândia - PR

To design strategies for the conservation and use of genetic resources of tree species such as jaboticaba tree, it is essential to make the characterization. In southwestern Paraná region, there are several forest fragments containing native jaboticaba tree (Plinia cauliflora), whose materials have broad potential for commercial orchards or breeding programs. As is the potential genetic diversity of a population to produce different genotypes, it would be able to start in such a characterization one of these fragments. The aim was to characterize fruits of jaboticaba tree (P. caulifora) of forest fragment kept in Clevelândia - PR for the presence of phenotypic variability, seeking to identify those superiors named for future selection as farming or male parent, as well as estimate genetic divergence between them, as a complementary tool for this purpose. Also, verify the regeneration and spatial distribution of the species. For the study was defined portion of a hectare (10.000 m²), with all individuals identified, mapped, with local coordinate system, and measured height and diameter. Fruits were characterized by sensory and biochemical characteristics in two years, 70 genotypes at 2013 and 56 at 2014, and of these 33 genotypes in both years. As a pre-selection criteria was adopted the choice of 20% of the genotypes that showed the highest frequency of superiority in the evaluated characteristics of the fruit. Genetic divergence among 33 genotypes per year was analyzed. The distribution pattern and spatial association was evaluated by Ripley's K function. It was classified for the first time the following ontogenetic stages of jaboticaba tree, by plant height, seedling (from 0.01 to 0.99 m), juvenile (1.0 to 4.99 m), immature (> 5.0 m, non-reproductive), adult (reproductive). It was also have been describe for the first time the naturally occurring juxtaposed seedlings, indicating polyembryony. The number of regenerating identified in the population (seedlings: n = 2163; juveniles: n = 330; immature: n = 59) was much larger than the number of adults (n = 132). The species showed reverse J-shaped size structure standard, with high concentration of regenerating. The regeneration distribution occurs in aggregate pattern and there is seedling-adult dependence, due seed dispersal and seedling emergence closest to mothers. The jaboticaba tree regeneration is sufficient to maintain the species for long term in this population, which should serve as reference to regeneration success for other studies of this important fruiting species from Ombrofile Mixed Forests. Has been pre-selected the jaboticaba trees 7, 42, 43, 47, 54, 91, 97, 104, 105, 118, 134, 153, 154, 157, 163, 169, 177, 186, 212, J7-01 and J7- 02, and 16 and 194 the ones that can now be selected by the superior characteristics of both cycles. It was recommended to carry out hybridization between genotypes 79 and 119, and 96 to 148. The quality of fruit analyzed showed potential for use as a dual purpose serving both in natura market or processing.

Variação genética para caracteres silviculturais em três espécies arbóreas da região do bolsão sul-mato-grossense.

O objetivo do presente estudo foi avaliar a variação genética e a seleção das melhores progênies de Myracrodruon urundeuva, Astronium fraxinifolium e Terminalia argentea, quanto aos caracteres de crescimento, em Selvíria, Mato Grosso do Sul. O teste de progênie foi instalado utilizando o delineamento de blocos ao acaso com 28 tratamentos, quatro repetições e dez plantas por parcela em linhas simples, no espaçamento 1,5 x 3,0 m. Aos 14 anos de idade, as progênies foram avaliadas quantos aos caracteres: altura (ALT); diâmetro a altura do peito (DAP); diâmetro médio da copa (DMC); forma do tronco (FT, escala de notas, variando de 1 a 5) e sobrevivência (SOB). Foram encontradas altas herdabilidades entre médias de progênies para os caracteres DAP (0,67), DMC (0,57) e forma do tronco (0,83), respectivamente. O ganho predito para DAP indica que a seleção baseada em informações, tanto de progênies, quanto de indivíduos dentro de progênies foram substanciais, o que denota uma boa perspectiva de exploração da variabilidade genética ao longo de um programa de melhoramento genético para as espécies estudadas, assim como o estabelecimento de estratégias para futura formação de um pomar de sementes.

Identificació de QTLs implicats en l'adaptació a canvis de temperatura en la planta model Arabidopsis thaliana

Estudi realitzat a partir d’una estada al Max Planck Institute for Plant Breeding Research, a Alemanya, entre 2006 i 2008. En aquest treball s´ha identificat una nove interacció epistàtica entre l'ecotip Landsberg, originari d'Europa del nord, i Kashmir-2 o Kondara, ambdós originaris d'Àsia Central. Els anàlisi de QTLs en poblacions recombinants Ler x Kas-2 i Ler x Kond indica el requeriment de 3 loci en Ler x Kas-2 i 2 loci en Ler x Kond. Els híbrids incompatibles crescuts a temperatures baixes (16°C) mostren seriosos defectes en el desenvolupament, mort cel.lular espontània i resistència a Hyaloperonospora parasitica. Aquests fenotips es suprimeixen a elevades temperatures o per mutació d'EDS1, o depleció dels nivells d'àcid sal.licílic per transformació amb salicil.lat hidroxilasa (NahG). El grau de severitat en els fenotips observats correlaciona amb els nivells d'àcid sal.licílic, indicant que aquesta molècula és essencial per a la senyalització d'incompatibilitats genètiques en Arabidopsis.

Desarrollo de una colección de Líneas Casi Isogénicas (NIL) para el estudio de caracteres de interés agronómico en especies del género Fragaria

Fragaria vesca posee varias características que la hacen interesante como especie modelo en la familia Rosaceae. Además, su naturaleza diploide permite sortear la complejidad genética de la fresa cultivada. Considerando que los genomas de las especies diploides y octoploides de Fragaria mantienen una relación de sintenia y colinearidad, estamos desarrollando una colección de Líneas Casi Isogénicas (NIL) en Fragaria diploide, usando Fragaria bucharica, una variedad asiática, como donante de introgresiones y Fragaria vesca var. Reine des Vallées, una variedad francesa comúnmente cultivada en España para usos industriales, como parental recurrente. Para obtener introgresiones de F. bucharica en un fondo genético homogéneo de F. vesca, se desarrolló un retrocruzamiento y se obtuvo una población BC1 que fue analizada para la presencia de alelos de F. bucharica a lo largo de los 7 grupos de ligamiento (LG) del mapa de referencia de Fragaria. Los individuos con bajo número de introgresiones de gran tamaño, que en conjunto abarcaron todo el genoma de F. bucharica, fueron seleccionados y retrocruzados con el parental recurrente. La descendencia fue analizada para los loci segregantes y los individuos BC2 con 1 ó 2 introgresiones fueron seleccionados como líneas donadoras de introgresiones de las NIL. Hasta el momento se han descrito tres fenotipos dominantes diferentes bajo condiciones de invernadero en varias NIL heterozigóticas: Las plantas con introgresiones en LG2 presentan estolones. Las plantas con introgresiones en LG1 y LG3 presentan floración temprana. Las plantas con introgresiones en LG6 presentan floración estacional. Actualmente se está trabajando en la selección y caracterización de introgresiones de pequeño tamaño mediante la autofecundación de las líneas seleccionadas. La caracterización fenotípica de los recombinantes seleccionados permitirá localizar y estimar los patrones de herencia de los genes implicados en los caracteres descritos, además de la identificación de nuevos caracteres recesivos que aparecerán en homozigosis.

Characterization of Arabidopsis FPS isozymes and FPS gene expression analysis provide insight into the biosynthesis of isoprenoid precursors in seeds

Arabidopsis thaliana contains two genes encoding farnesyl diphosphate (FPP) synthase (FPS), the prenyl diphoshate synthase that catalyzes the synthesis of FPP from isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In this study, we provide evidence that the two Arabidopsis short FPS isozymes FPS1S and FPS2 localize to the cytosol. Both enzymes were expressed in E. coli, purified and biochemically characterized. Despite FPS1S and FPS2 share more than 90% amino acid sequence identity, FPS2 was found to be more efficient as a catalyst, more sensitive to the inhibitory effect of NaCl, and more resistant to thermal inactivation than FPS1S. Homology modelling for FPS1S and FPS2 and analysis of the amino acid differences between the two enzymes revealed an increase in surface polarity and a greater capacity to form surface salt bridges of FPS2 compared to FPS1S. These factors most likely account for the enhanced thermostability of FPS2. Expression analysis of FPS::GUS genes in seeds showed that FPS1 and FPS2 display complementary patterns of expression particularly at late stages of seed development, which suggests that Arabidopsis seeds have two spatially segregated sources of FPP. Functional complementation studies of the Arabidopsis fps2 knockout mutant seed phenotypes demonstrated that under normal conditions FPS1S and FPS2 are functionally interchangeable. A putative role for FPS2 in maintaining seed germination capacity under adverse environmental conditions is discussed.

Phenotyping maize for adaptation to drought

The need of a better adaptation of crops to drought is an issue of increasing urgency. However, enhancing the tolerance of maize has, therefore, proved to be somewhat elusive in terms of plant breeding. In that context, proper phenotyping remains as one of the main factors limiting breeding advance. Topics covered by this review include the conceptual framework for identifying secondary traits associated with yield response to drought and how to measure these secondary traits in practice.

Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry

Background Plant hormones play a pivotal role in several physiological processes during a plant's life cycle, from germination to senescence, and the determination of endogenous concentrations of hormones is essential to elucidate the role of a particular hormone in any physiological process. Availability of a sensitive and rapid method to quantify multiple classes of hormones simultaneously will greatly facilitate the investigation of signaling networks in controlling specific developmental pathways and physiological responses. Due to the presence of hormones at very low concentrations in plant tissues (10-9 M to 10-6 M) and their different chemistries, the development of a high-throughput and comprehensive method for the determination of hormones is challenging. Results The present work reports a rapid, specific and sensitive method using ultrahigh-performance liquid chromatography coupled to electrospray ionization tandem spectrometry (UPLC/ESI-MS/MS) to analyze quantitatively the major hormones found in plant tissues within six minutes, including auxins, cytokinins, gibberellins, abscisic acid, 1-amino-cyclopropane-1-carboxyic acid (the ethylene precursor), jasmonic acid and salicylic acid. Sample preparation, extraction procedures and UPLC-MS/MS conditions were optimized for the determination of all plant hormones and are summarized in a schematic extraction diagram for the analysis of small amounts of plant material without time-consuming additional steps such as purification, sample drying or re-suspension. Conclusions This new method is applicable to the analysis of dynamic changes in endogenous concentrations of hormones to study plant developmental processes or plant responses to biotic and abiotic stresses in complex tissues. An example is shown in which a hormone profiling is obtained from leaves of plants exposed to salt stress in the aromatic plant, Rosmarinus officinalis.

Estabelecimento de um protocolo regenerativo para a micropropagação do abacaxizeiro

No Laboratório de Fisiologia do Desenvolvimento e Genética Vegetal do CCA-UFSC, nos anos de 1993 a 1996, foram testadas 24 combinações de tratamentos envolvendo dois genótipos de abacaxizeiro (Ananas comosus (L.) Merr.), seis combinações dos fitorreguladores ácido naftalenoacético (ANA) e 6-benzilaminopurina (BAP), e os meios de cultura líquidos e geleificados, com o objetivo de estabelecer um protocolo regenerativo para a micropropagação do abacaxizeiro. A taxa de regeneração comportou-se de forma quadrática para a maioria das combinações testadas. O meio de cultura MS (Murashige & Skoog, 1962), líquido, adicionado de ANA (2,7 µM) e BAP (4,4 µM), proporcionou uma taxa média de regeneração de 19,7 brotos/explante. A magnitude do efeito genotípico exibido pelas cultivares utilizadas foi intermediária entre o efeito das combinações dos níveis de ANA e BAP (o maior) e o efeito da constituição física do meio de cultura. A melhor combinação de tratamentos foi testada em 17 acessos coletados no Estado de Santa Catarina, demonstrando-se a eficiência do protocolo regenerativo. A taxa média de regeneração foi de 15,3 brotos/explante, dos quais 40% apresentaram altura igual ou inferior a 3 cm. Brotos enraizados ou não, com altura igual ou superior a 3 cm, apresentaram valores médios de 95,5% de sobrevivência.