Isolation of Gemmata-like and Isosphaera-like planctomycete bacteria from soil and freshwater

New cultured strains of the planctomycete division (order Planctomycetales) of the domain Bacteria related to species in the genera Gemmata and Isosphaera were isolated from soil, freshwater, and a laboratory ampicillin solution. Phylogenetic analysis of the 16S rRNA gene from eight representative isolates showed that all the isolates were members of the planctomycete division. Six isolates clustered with Gemmata obscuriglobus and related strains, while two isolates clustered with Isosphaera pallida. A double-membrane-bounded nucleoid was observed in Gemmata-related isolates but not in Isosphaera-related isolates, consistent with the ultrastructures of existing species of each genus. Two isolates from this study represent the first planctomycetes successfully cultivated from soil.

Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon

Bacteria phenotypically resembling members of the phylogenetically distinct planctomycete group of the domain Bacteria were isolated from postlarvae of the giant tiger prawn, Penaeus monodon. A selective medium designed in the light of planctomycete antibiotic resistance characteristics was used for this isolation. Planctomycetes were isolated from both healthy and monodon baculovirus-infected prawn postlarvae, The predominant colony type recovered from postlarvae regardless of viral infection status was nonpigmented. Other, less commonly observed types were pink or orange pigmented, A planctomycete-specific 16S rRNA-directed probe was designed and used to screen the isolates for their identity as planctomycetes prior to molecular phylogenetic characterization. 16S rRNA genes from nine prawn isolates together with two planctomycete reference strains (Planctomyces brasiliensis and Gemmata obscuriglobus) were sequenced and compared with reference sequences from the planctomycetes and other members of the domain Bacteria, Phylogenetic analyses and sequence signatures of the 16S rRNA genes demonstrated that the prawn isolates were members of the planctomycete group, Five representatives of the predominant nonpigmented colony type were members of the Pirellula group within the planctomycetes, as were three pink-pigmented colony type representatives. Homology values and tree topology indicated that representatives of the nonpigmented and pink-pigmented colony types formed two discrete clusters within the Pirellula group, not identical to any known Pirellula species, A sole representative of the orange colony type was a member of the Planctomyces group, virtually identical in 16S rDNA sequence to P. brasiliensis, and exhibited distinctive morphology.

Pirellulosomes: A new type of membrane-bounded cell compartment in planctomycete bacteria of the genus Pirellula

A distinct type of cellular organization was found in two species of the planctomycete genus Pirellula, Pirellula marina and Pirellula staleyi. Both species possess two distinct regions within the cell which are separated by a single membrane. The major region of the cell, the pirellulosome, contains the fibrillar condensed nucleoid. The other area, the polar cap region, forms a continuous layer surrounding the entire pirellulosome and displays a cap of asymmetrically distributed material at one cell pole. Immuno- and cytochemical-labelling of P. marina demonstrated that DNA is located exclusively within the pirellulosome; cell RNA is concentrated in the pirellulosome, with some RNA also located in the polar cap region.

Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell

The organisation of cells of the planctomycete species Pirellula marina, Isosphaera pallida, Gemmata obscuriglobus, Planctomyces mat-is and Candidatus Brocadia anammoxidans was investigated based on ultrastructure derived from thin-sections of cryosubstituted cells, freeze-fracture replicas, and in the case of Gemmata obscuriglobus and Pirellllla marina, computer-aided 3-D reconstructions from serial sections of cryosubstituted cells. All planctomycete cells display a peripheral ribosome-free region, termed here the paryphoplasm, surrounding the perimeter of the cell, and an interior region including any nucleoid regions as well as ribosome-like particles, bounded by a single intracytoplasmic membrane (ICM), and termed the pirellulosome in Pirellula species. Immunogold labelling and RNase-gold cytochemistry indicates that in planctomycetes all the cell DNA is contained wholly within the interior region bounded by the ICM, and the paryphoplasm contains no DNA but at least some of the cell's RNA. The ICM in Isosphaera pallida and Planctomyces mat-is is invaginated such that the paryphoplasm forms a major portion of the cell interior in sections, but in other planctomycetes it remains as a peripheral zone. In the anaerobic ammonium-oxidising (anammox process) chemoautotroph Candidatus Brocadia anammoxidans the interior region bounded by ICM contains a further internal single-membrane-bounded region, the anam-moxosome. In Gemmata obscuriglobus. the interior ICM-bounded region contains the nuclear body, a double-membrane-bounded region containing the cell's nucleoid and all genomic DNA in addition to some RNA. Shared features of cell compartmentalisation in different planctomycetes are consistent with the monophyletic nature of the planctomycetes as a distinct division of the Bacteria. The shared organisational plan for the planctomycete cell constitutes a new type not known in cells of other bacteria.

Phylogeny of the filamentous bacterium 'Nostocoida limicola' III from activated sludge

Five strains of the filamentous bacterium 'Nostocoida limicola' III were successfully isolated into pure culture from samples of activated sludge biomass from five plants in Australia. 16S rRNA gene sequence analyses showed that all isolates were members of the Planctomycetales, most closely related to Isosphaera pallida, but they differed phenotypically from this species in that they did not glide and were not thermotolerant. The ultrastructure of these 'N. limicola' III isolates was also consistent with them being Planctomycetales, in that they possessed complex intracellular membrane systems compartmentalizing the cells. However, the arrangements of these intracellular membranes differed between isolates. These data confirm that 'N. limicola' III is phylogenetically unrelated to both 'N. limicola' I and 'N. limicola' II, activated sludge filamentous bacteria which share morphological features in common with 'N. limicola' III and which have been presumed historically to be the same or very similar bacteria.

Intracellular compartmentation in planctomycetes

The phylum Planctomycetes of the domain Bacteria consists of budding, peptidoglycan-less organisms important for understanding the origins of complex cell organization. Their significance for cell biology lies in their possession of intracellular membrane compartmentation. All planctomycetes share a unique cell plan, in which the cell cytoplasm is divided into compartments by one or more membranes, including a major cell compartment containing the nucleoid. Of special significance is Gemmata obscuriglobus, in which the nucleoid is enveloped in two membranes to form a nuclear body that is analogous to the structure of a eukaryotic nucleus. Planctomycete compartmentation may have functional physiological roles, as in the case of anaerobic ammonium-oxidizing anammox planctomycetes, in which the anammoxosome harbors specialized enzymes and is wrapped in an envelope possessing unique ladderane lipids. Organisms in phyla other than the phylum Planctomycetes may possess compartmentation similar to that of some planctomycetes, as in the case of members of the phylum Poribacteria from marine sponges.

A review of the New World Atteva Walker moths (Yponomeutidae, Attevinae)

The New World species of Atteva Walker are reviewed and illustrated in colour. One name: A. pustulella (Fabricius), nom. rev. and three species: A. aurea (Fitch), sp. rev., A. floridana (Neumoegen), sp. rev. and A. gemmata (Grote), sp. rev. are reinstated; five names are synonymised under A. aurea: Poeciloptera compta Clemens, syn. n., A. edithella Busck, syn. n., A. exquisita Busck, syn. n., A. ergatica Walsingham, syn. n. and A. microsticta Walsingham, syn. n.; four new species are described: A. rawlinsi sp. n., from the Dominican Republic, A. sidereoides sp. n., from Jamaica, A. entermedia sp. n., from Antigua, and A. zebrina sp. n., from Brazil; lectotypes for A. floridana and A. glaucopidella (Guenée) (=fulviguttata) are also designated.

Upper Cenozoic dinoflagellate cysts from the continental slope and rise off New Jersey

This report contains the occurrence data for dinoflagellate cysts recorded from 163 samples taken from Sites 902 through 906, during Ocean Drilling Program (ODP) Leg 150. The dinoflagellate cyst (dinocyst) stratigraphy has been presented in Mountain, Miller, Blum, et al. (1994, doi:10.2973/odp.proc.ir.150.1994), and was based on these data. This report provides the full dinocyst data set supporting the dinocyst stratigraphic interpretations made in Mountain, Miller, Blum, et al. (1994). For Miocene shipboard dinocyst stratigraphy, I delineated 10 informal zones: pre-A, and A through I, in ascending stratigraphic order. These zones are defined in Shipboard Scientific Party (1994a, doi:10.2973/odp.proc.ir.150.103.1994), and are based on my studies of Miocene dinocyst stratigraphy in the Maryland and Virginia coastal plain (de Verteuil and Norris, 1991, 1992; de Verteuil, 1995). This zonation has been slightly revised (de Verteuil and Norris, 1996), and the new formal zone definitions are repeated below. Each new zone has an alpha-numeric abbreviation starting with "DN" (for Dinoflagellate Neogene). The equivalence between the informal zones reported in Mountain, Miller, Blum, et al. (1994), and the new DN zones is illustrated in Figure 1. For clarity, I delineated both zonations in the range charts that accompany this report (Tables 1-6). De Verteuil and Norris (1996a), using these and other data, correlated the DN zonation with the geological time scale of Berggren et al. (1995). Figure 2 summarizes these correlations and can be used to check the chronostratigraphic position of samples in this report, as determined by dinocyst stratigraphy. A thorough discussion of the basis for, and levels of uncertainty associated with, these correlations to the Cenozoic time scale can be found in de Verteuil and Norris (1996a). The Appendix lists all the dinocyst taxa recorded during shipboard analyses of Leg 150 samples. Open nomenclature is used for undescribed taxa. The range charts and Appendix also include reference to several new taxa that de Verteuil and Norris (1996b) described from Miocene coastal plain strata in Maryland and Virginia. Names of these taxa in Tables 1 through 6 and in the Appendix of this report are not intended for effective publication as defined in the International Code of Botanical Nomenclature (ICBN, Greuter et al., 1994). Therefore, taxonomic nomenclature contained in this report is not to be treated as meeting the conditions of effective and valid publication (ICBN; Article 29).

Diatoms in Paleocene sediments of the southwestern South Atlantic

The taxonomy and stratigraphy of pelagic Paleocene diatoms from ODP Sites 698, 700, and 702 and DSDP Site 524 in the South Atlantic and DSDP Site 214 in the Indian Ocean are presented, as well as paleogeographic and paleoecologic implications. Eleven new species and one new variety are described and one new combination is proposed: Coscinodiscus cruxii sp. nov. Grunowiella palaeocaenica var. alternans var. nov. Hemiaulusl beatus sp. nov. Hemiaulusl ciesielskii sp. nov. Hemiaulusl conicus sp. nov. Hemiaulus kristoffersenii sp. nov. Hemiaulus nocchiae sp. nov. Hemiaulusl oonkii sp. nov. Hemiaulusl velatus sp. nov. Triceratium gombosii sp. nov. Trochosira gracillima comb. nov. Trochosira marginata sp. nov. Trochosira radiata sp. nov. Hole 700B provides one of the most continuous diatomaceous Paleocene profiles known. Stratigraphic ranges of diatom species from this and other Southern Hemisphere sites are calibrated against calcareous microfossil zones. The first-appearance datums of Triceratium gombosii, Hemiaulus incurvus, and Triceratium mirabile in Paleocene deep-sea sediments are useful for regional stratigraphic correlations. Quantitative analysis of the biosiliceous microfossil groups (diatoms, silicoflagellates, radiolarians, and archaeomonadaceae) shows that preservation of diatoms is confined primarily to the upper Paleocene (planktonic foraminifer Zones P3 and P4 and calcareous nannofossil Zones upper NP5 to lower NP9). In the lower Paleocene only short intervals in Hole 700B are diatomaceous. A correlation between the degree of silica diagenesis and the calcium carbonate content of the sediment is not obvious. Diatom species analysis reflects changes in the paleoenvironment between island-related upwelling conditions with highly diverse and well-preserved diatom assemblages and less productive periods resulting in less wellpreserved diatom assemblages with a higher content of robust neritic diatoms.

Diatom biostratigraphy and datum events of ODP Hole 183-1140A

Ocean Drilling Program (ODP) Leg 183 Site 1140 provided a lower Oligocene to middle Miocene record of diatom assemblages from the northern Kerguelen Plateau. Samples were examined to improve the resolution of shipboard diatom biostratigraphy. The material is complementary to that recovered during ODP Legs 119 and 120, and the diatom zonation of Harwood and Maruyama could be readily applied. A standard succession of biostratigraphic zones from the middle Miocene and lower Oligocene was delineated, although some zones were unrecognizable because of poor core recovery. The detailed diatom biostratigraphy presented here agrees well with shipboard calcareous nannofossil biostratigraphy. Sediment accumulation rates based on diatom bioevents average 1.26 cm/k.y.

Stratigraphic distribution of marine palynomorph species recorded for the Miocene of ODP Hole 105-645E (Table 1)

A total of 145 samples were analyzed for palynology, and all were found to be productive. Residues are dominated by pollen, terrestrial spores, and land plant tissues. Marine palynomorphs occur in all samples, which allowed us to recognize five Miocene dinocyst assemblage zones. Dinocyst assemblages indicate cool-water conditions and suggest a neritic rather than fully oceanic environment, with not only North Atlantic and Norwegian Sea affinities, but also containing both notable protoperidiniacean and possible endemic elements. Dinocyst assemblages indicate an early Miocene age for the bottom of Hole 645E and an age no younger than early late Miocene (Sample 105-645E-24R, CC) near the top of the interval studied. These age assignments provide an estimated initiation of ice rafting in Baffin Bay at between 7.4 and 9.5 Ma. Increased terrigenous influx and apparent disappearance of certain dinocyst taxa occur in the middle to late Miocene and may be related to oceanographic changes or climatic deterioration. Spores and pollen indicate a climate that varied within a temperate regime during the early and middle to early late Miocene, followed by climatic deterioration. Four new dinocyst species are described: Batiacasphaera gemmata, Impletosphaeridium prolatum, Operculodinium vacuolatum, and Selenopemphix brevispinosa. The acritarch genus Cyclopsiella Drugg and Loeblich is emended, and two new combinations have been created: Cyclopsiella granosa (Matsuoka) and Cyclopsiella? laevigata (Chateauneuf). Cyclopsiella granosa (Matsuoka) n. comb. is considered a subjective junior synonym of Cyclopsiella granulata He and Li. Ascostomocystis granulatus Chateauneuf has been provisionally allocated to Cyclopsiella and renamed Cyclopsiella? chateauneufii. Two new acritarch species are described: Cyclopsiella spiculosa and Cymatiosphaera! baffinensis.