Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era

The class Kinetoplastea encompasses both free-living and parasitic species from a wide range of hosts. Several representatives of this group are responsible for severe human diseases and for economic losses in agriculture and livestock. While this group encompasses over 30 genera, most of the available information has been derived from the vertebrate pathogenic genera Leishmaniaand Trypanosoma. Recent studies of the previously neglected groups of Kinetoplastea indicated that the actual diversity is much higher than previously thought. This article discusses the known segment of kinetoplastid diversity and how gene-directed Sanger sequencing and next-generation sequencing methods can help to deepen our knowledge of these interesting protists.

Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era

The class Kinetoplastea encompasses both free-living and parasitic species from a wide range of hosts. Several representatives of this group are responsible for severe human diseases and for economic losses in agriculture and livestock. While this group encompasses over 30 genera, most of the available information has been derived from the vertebrate pathogenic genera Leishmania and Trypanosoma. Recent studies of the previously neglected groups of Kinetoplastea indicated that the actual diversity is much higher than previously thought. This article discusses the known segment of kinetoplastid diversity and how gene-directed Sanger sequencing and next-generation sequencing methods can help to deepen our knowledge of these interesting protists.

Environmental sensitivity index (ESI) mapping of oil spill in the amazon coastal zone: the PIATAM Mar project

A importância do monitoramento ambiental é medida pelos vários casos de derramamentos de óleo ocorridos no mundo durante as últimas três décadas. Isto tem incentivado as empresas e órgãos do governo envolvidos na prevenção e combate a estes acidentes a aperfeiçoarem cada vez mais os métodos, tanto preventivos como corretivos, para a minimização dos danos gerados por acidentes com derramamento de óleo. Este trabalho objetiva contextualizar de forma histórica como os acidentes com derramamento de óleo propiciaram o desenvolvimento de pesquisa tecnológica a partir de parcerias entre empresas de petróleo, agências de governo, universidades e institutos de pesquisa no Brasil, em especial na zona costeira Amazônica. Como resultado, índices de sensibilidade ambiental ao derramamento de óleo (ISA) foram definidos especialmente para a Amazônia costeira, onde processos fluviais e marinhos se encontram na foz do maior rio do mundo, o rio Amazonas. Perspectivas de pesquisa e respostas de emergência a acidentes são apresentadas, a fim de se conservar a diversidade socioambiental da mais importante região tropical do planeta.

Applying spatial analysis of genetic and environmental data to predict connection corridors to the New World screwworm populations in South America

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Composição florística da floresta semidecídua de altitude do Parque Municipal da Grota Funda (Atibaia - Estado de São Paulo)

A floristic survey was carried out in the Grota Funda Municipal Park, Atibaia Municipality, Sao Paulo State (45º45 - 46º 45'W and 23º10 - 23º15'S), a mountainous region from 900 to 1400 meters above sea level. The climate is characterized by two seasons a hot, moist period from October to March and a dry, cold period from April to August, with frequent frosts. The sandy soil is low in fertility and highly acid at the surface. The study was done from April 1987 to November 1988. A total of 415 species were collected and identified: 362 dicotyledons belonging to 84 families and 224 genera, and 53 monocotyledons beloging to 15 families and 43 genera. Species richness in Atibaia can be attributed to environmental diversity, edaphic variation, and slight disturbance of the vegetation. A comparison with other floristic surveys in mountain forests was made and a list of the most common species of this kind of forest is presented.

Caraterização dos habitats propícios à conservação da Estrelinha-de-Santa-Maria (Regulus regulus sanctaemariae)

Dissertação de Mestrado, Gestão e Conservação da Natureza, 11 de Junho de 2014, Universidade dos Açores.

Spatialization of climate, physical and socioeconomic factors that affect the dairy goat production in Brazil and their impact on animal breeding decisions

Brazil has high climate, soil and environmental diversity, as well as distinct socioeconomic and political realities, what results in differences among the political administrative regions of the country. The objective of this study was to determine spatial distribution of the physical, climatic and socioeconomic aspects that best characterize the production of dairy goats in Brazil. Production indices of milk per goat, goat production, milk production, as well as temperature range, mean temperature, precipitation, normalized difference vegetation index, relative humidity, altitude, agricultural farms; farms with native pasture, farms with good quality pasture, farms with water resources, farms that receive technical guidance, family farming properties, non-familiar farms and the human development index were evaluated. The multivariate analyses were carried out to spatialize climatic, physical and socioeconomic variables and so differenciate the Brazilian States and Regions. The highest yields of milk and goat production were observed in the Northeast. The Southeast Region had the second highest production of milk, followed by the South, Midwest and North. Multivariate analysis revealed distinctions between clusters of political-administrative regions of Brazil. The climatic variables were most important to discriminate between regions of Brazil. Therefore, it is necessary to implement animal breeding programs to meet the needs of each region.

A descoberta do meio ambiente: Itatiaia e a política brasileira de parques nacionais

O presente trabalho tem por objetivo compreender como se deu a política de criação de parques nacionais no Brasil. Para tanto, faremos à luz da história uma retrospectiva das atividades econômicas que mais culminaram em prejuízos ambientais no Brasil assim como um sucinto levantamento dos instrumentos estabelecidos, cada um à sua época, enquanto responsáveis pela redução ou mesmo pela retratação destes danos. Dentre estes instrumentos citamos os parques nacionais, uma das várias qualidades de unidades de conservação estabelecidas enquanto metodologia responsável por diminuir o avanço exploratório sobre um bioma específico. Concluiremos essa dissertação com uma análise dos motivos que justificaram a inserção do primeiro parque nacional brasileiro na região Serra da Mantiqueira. O Parque Nacional do Itatiaia, criado durante o primeiro governo do Presidente Vargas e estrategicamente localizado entre as maiores cidades do país apresentava-se ao mesmo tempo como um espaço de preservação ambiental e de deleite de veranistas, servindo à salvaguarda biota e ao lazer. Foi modelo para as outras seis dezenas de parques nacionais que fazem parte de nossas unidades de conservação e continua chamando a atenção pela beleza cênica e pela diversidade ambiental que protege.

Mapeamento de sensibilidade ambiental a derramamentos de óleo na região costeira de Bertioga - SP

Pós-graduação em Geociências e Meio Ambiente - IGCE

Agricultura orgânica como processo territorial no município de Chapecó-SC

Pós-graduação em Geografia - FCT

A sucessão ecológica em ambientes florestais em restauração: estrutura e dinâmica da regeneração natural

Ecological restoration aims to restore the self-sustainability potential of degraded environments. The successional trajectory of areas in restoration may differ from the reference ecosystem on a number of factors, especially the disturbance history of the area and management techniques applied in order to reverse the degradation scenario. In this sense, the objective of this study was to characterize the dynamics of natural regeneration and the structure of the regenerating community in an area of ecological restoration for 25 years on the right bank of the Rio Grande in the Power Station in Camargos that belongs to the Companhia Energetica de Minas Gerais - CEMIG, Nazareno, MG, in order to identify the current state of environmental regeneration. In November 2014, there was the first community inventory of seedlings existing in regeneration subplots (2 x 2 m) within the inclusion criteria (height ≥ 10 cm and DBH <5 cm), divided into 44 subplots (11 plots) in two areas, one area in restoration (REF) and a fragment of native vegetation (FRAG). In October 2015, the second sampling was carried out, in which individuals were resampled and recruits and dead individuals quantified. The parameters abundance, floristic similarity, density, dominance, importance value, equability, richness and diversity were analyzed in both samples. The dynamics was evaluated for the number of individuals and basal area in the period of 2014-2015 and individuals distributed according to height. The history of usage area provoked different behavior between the study environments; the patterns of the FRAG and REF communities along the years allowed the distinction between environments and demonstrated great environmental diversity, with differences in the abundance of species, floristic similarity, richness, diversity, vertical structure and dynamics parameters. In the REF area, there was a considerable increase in the density of individuals along the years and the establishment of different species. In this sense, the evaluation of natural regeneration in REF has shown that resilience is gradually being resumed, a necessary condition to support the potential for environmental self-sustainability. However, given the disturbance history, it can be concluded that the environment moves to an alternative state, which is possibly different from that prior to degradation.

Espaços territoriais especialmente protegidos como instrumentos jurídicos de defesa dos povos da Amazônia: uma análise dos riscos socioambientais da expansão da soja geneticamente modificada

A presente dissertação tem o objetivo de analisar alguns dos principais espaços territoriais especialmente protegidos existentes no Direito brasileiro, a partir da perspectiva socioambiental e eticamente comprometida com os povos da Amazônia, identificando seus limites e suas possibilidades na defesa contra os potenciais impactos produzidos pela introdução da soja transgênica na região. Para isso, analisa-se o processo de inserção histórica da Amazônia no sistema-mundo vigente, sob a forma de um desenvolvimento desigual e combinado, marcado por diversos conflitos, pela violência e pela grilagem de terras. Dentro desse contexto, buscou-se identificar as especificidades da forma como o agronegócio altamente capitalizado da soja se insere na região, a partir do conceito-chave da geopolítica, que, com a introdução da biotecnologia, produz o nascimento da biopolítica. A forma jurídica dos OGM é então analisada enquanto produto desta biopolítica, ensejando uma série de riscos socioambientais ainda não esclarecidos plenamente pela ciência, e que exigem, justamente por isso, a aplicação do princípio da precaução. Tal princípio, não obstante constituir-se como um dos pilares do Direito Ambiental brasileiro, foi inconstitucionalmente afastado do regime jurídico dos transgênicos, provocando polêmicas inclusive no que tange à possibilidade jurídica do cultivo de variedades GM nas proximidades de áreas protegidas. Analisando o atual processo de introdução e expansão da soja transgênica na Amazônia, região configurada por uma enorme sócio-biodiversidade e repleta de espaços territoriais especialmente protegidos, busca-se então conferir uma Interpretação jurídica de caráter socioambiental, portanto coerente com a Constituição Federal de 1988, no que tange ao regime jurídico vigente para o cultivo de transgênicos no entorno de unidades de conservação, terras indígenas e territórios quilombolas, selecionados em virtude do potencial protagonismo dos povos da Amazônia na ação de resistência e de insurgência contra o projeto da Totalidade dominadora, que, ao produzir suas vítimas, produz também a possibilidade histórica da organização destas vítimas e a mobilização política para a construção de um projeto político de libertação.

Genetic characterization of Toxoplasma gondii isolates from eared doves (Zenaida auriculata) in Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Regional differences in the spatial and temporal heterogeneity of oceanographic habitat used by Steller sea lions

Over the past three decades, the decline and altered spatial distribution of the western stock of Steller sea lions (Eumetopias jubatus) in Alaska have been attributed to changes in the distribution or abundance of their prey due to the cumulative effects of fisheries and environmental perturbations. During this period, dietary prey occurrence and diet diversity were related to population decline within metapopulation regions of the western stock of Steller sea lions, suggesting that environmental conditions may be variable among regions. The objective of this study, therefore, was to examine regional differences in the spatial and temporal heterogeneity of oceanographic habitat used by Steller sea lions within the context of recent measures of diet diversity and population trajectories. Habitat use was assessed by deploying satellite-depth recorders and satellite relay data loggers on juvenile Steller sea lions (n = 45) over a five-year period (2000–2004) within four regions of the western stock, including the western, central, and eastern Aleutian Islands, and central Gulf of Alaska. Areas used by sea lions during summer months (June, July, and August) were demarcated using satellite telemetry data and characterized by environmental variables (sea surface temperature [SST] and chlorophyll a [chl a]), which possibly serve as proxies for environmental processes or prey. Spatial patterns of SST diversity and Steller sea lion population trends among regions were fairly consistent with trends reported for diet studies, possibly indicating a link between environmental diversity, prey diversity, and distribution or abundance of Steller sea lions. Overall, maximum spatial heterogeneity coupled with minimal temporal variability of SST appeared to be beneficial for Steller sea lions. In contrast, these patterns were not consistent for chl a, and there appeared to be an ecological threshold. Understanding how Steller sea lions respond to measures of environmental heterogeneity will ultimately be useful for implementing ecosystem management approaches and developing additional conservation strategies.

Survey-gap analysis in expeditionary research: where do we go from here?

Research expeditions into remote areas to collect biological specimens provide vital information for understanding biodiversity. However, major expeditions to little-known areas are expensive and time consuming, time is short, and well-trained people are difficult to find. In addition, processing the collections and obtaining accurate identifications takes time and money. In order to get the maximum return for the investment, we need to determine the location of the collecting expeditions carefully. In this study we used environmental variables and information on existing collecting localities to help determine the sites of future expeditions. Results from other studies were used to aid in the selection of the environmental variables, including variables relating to temperature, rainfall, lithology and distance between sites. A survey gap analysis tool based on 'ED complementarity' was employed to select the sites that would most likely contribute the most new taxa. The tool does not evaluate how well collected a previously visited site survey site might be; however, collecting effort was estimated based on species accumulation curves. We used the number of collections and/or number of species at each collecting site to eliminate those we deemed poorly collected. Plants, birds, and insects from Guyana were examined using the survey gap analysis tool, and sites for future collecting expeditions were determined. The south-east section of Guyana had virtually no collecting information available. It has been inaccessible for many years for political reasons and as a result, eight of the first ten sites selected were in that area. In order to evaluate the remainder of the country, and because there are no immediate plans by the Government of Guyana to open that area to exploration, that section of the country was not included in the remainder of the study. The range of the ED complementarity values dropped sharply after the first ten sites were selected. For plants, the group for which we had the most records, areas selected included several localities in the Pakaraima Mountains, the border with the south-east, and one site in the north-west. For birds, a moderately collected group, the strongest need was in the north-west followed by the east. Insects had the smallest data set and the largest range of ED complementarity values; the results gave strong emphasis to the southern parts of the country, but most of the locations appeared to be equidistant from one another, most likely because of insufficient data. Results demonstrate that the use of a survey gap analysis tool designed to solve a locational problem using continuous environmental data can help maximize our resources for gathering new information on biodiversity. (c) 2005 The Linnean Society of London.