Use of ecological information in urban planning

Urbanization leads to irreversible land-use change, which has ecological consequences such as the loss and fragmentation of green areas, and structural and functional changes in terrestrial and aquatic ecosystems. These consequences diminish ecosystem services important for human populations living in urban areas. All this results in a conflict situation: how to simultaneously meet the needs of city growth and the principles of sustainable development, and especially conserve important green areas within and around built-up areas? Urban planners and decisionmakers have an important role in this, since they must use the ecological information mainly from species and biotope inventories and biodiversity impact assessments in determining the conservation values of green areas. The main aim of this thesis was to study the use of ecological information in the urban land-use planning and decisionmaking process in the Helsinki Metropolitan Area, Finland. At first, the literature on ecological-social systems linkages related to urban planning was reviewed. Based on the review, a theoretical and conceptual framework for the research on Finnish urban setting was adapted. Secondly, factors determining the importance and effectiveness of incorporation of ecological information into the urban planning process, and the challenges related to the use of ecological information were studied. Thirdly, the importance and use of Local Ecological Knowledge in urban planning were investigated. Then, factors determining the consideration of urban green areas and related ecological information in political land-use decisionmaking were studied. Finally, in a case study illustrating the above considerations, the importance of urban stream ecosystems in the land-use planning was investigated. This thesis demonstrated that although there are several challenges in using ecological information effectively, it is considered as an increasingly important part of the basic information used in urban planning and decisionmaking process. The basic determinants for this are the recent changes in environmental legislation, but also the increasing appreciation of green areas and their conservation values by all the stakeholders. In addition, Local Ecological Knowledge in its several forms can be a source of ecological information for planners if incorporated effectively into the process. This study also showed that rare or endangered species and biotopes, and related ecological information receive priority in the urban planning process and usually pass through the decisionmaking system. Furthermore, the stream Rekolanoja case indicates that planners and residents see the value of urban stream ecosystem as increasingly important for the local health and social values, such as recreation and stress relief.

Sampling designs on stream networks using the pseudo-Bayesian approach

Monitoring stream networks through time provides important ecological information. The sampling design problem is to choose locations where measurements are taken so as to maximise information gathered about physicochemical and biological variables on the stream network. This paper uses a pseudo-Bayesian approach, averaging a utility function over a prior distribution, in finding a design which maximizes the average utility. We use models for correlations of observations on the stream network that are based on stream network distances and described by moving average error models. Utility functions used reflect the needs of the experimenter, such as prediction of location values or estimation of parameters. We propose an algorithmic approach to design with the mean utility of a design estimated using Monte Carlo techniques and an exchange algorithm to search for optimal sampling designs. In particular we focus on the problem of finding an optimal design from a set of fixed designs and finding an optimal subset of a given set of sampling locations. As there are many different variables to measure, such as chemical, physical and biological measurements at each location, designs are derived from models based on different types of response variables: continuous, counts and proportions. We apply the methodology to a synthetic example and the Lake Eacham stream network on the Atherton Tablelands in Queensland, Australia. We show that the optimal designs depend very much on the choice of utility function, varying from space filling to clustered designs and mixtures of these, but given the utility function, designs are relatively robust to the type of response variable.

Public preferences for biodiversity conservation and climate-change mitigation: A choice experiment using ecosystem services indicators

Potential conflicts exist between biodiversity conservation and climate-change mitigation as trade-offs in multiple-use land management. This study aims to evaluate public preferences for biodiversity conservation and climate-change mitigation policy considering respondents’ uncertainty on their choice. We conducted a choice experiment using land-use scenarios in the rural Kushiro watershed in northern Japan. The results showed that the public strongly wish to avoid the extinction of endangered species in preference to climate-change mitigation in the form of carbon sequestration by increasing the area of managed forest. Knowledge of the site and the respondents’ awareness of the personal benefits associated with supporting and regulating services had a positive effect on their preference for conservation plans. Thus, decision-makers should be careful about how they provide ecological information for informed choices concerning ecosystem services tradeoffs. Suggesting targets with explicit indicators will affect public preferences, as well as the willingness of the public to pay for such measures. Furthermore, the elicited-choice probabilities approach is useful for revealing the distribution of relative preferences for incomplete scenarios, thus verifying the effectiveness of indicators introduced in the experiment.

A systematic approach to biological control agent exploration and prioritisation for prickly acacia (Acacia nilotica ssp. indica)

Agent selection for prickly acacia has been largely dictated by logistics and host specificity. Given that detailed ecological information is available on this species in Australia, we propose that it is possible to select agents based on agent efficacy and desired impact on prickly acacia demography. We propose to use the 'plant genotype' and 'climatic' similarities as filters to identify areas for future agent exploration; and plant response to herbivory and field host range as 'predictive' filters for agent prioritisation. Adopting such a systematic method that incorporates knowledge from plant population ecology and plant-herbivore interactions makes agent selection decisions explicit and allow more rigorous evaluations of agent performance and better understanding of success and failure of agents in weed biological control.

Hierarchical Bayesian modelling of plant pest invasions with human-mediated dispersal

Hierarchical Bayesian models can assimilate surveillance and ecological information to estimate both invasion extent and model parameters for invading plant pests spread by people. A reliability analysis framework that can accommodate multiple dispersal modes is developed to estimate human-mediated dispersal parameters for an invasive species. Uncertainty in the observation process is modelled by accounting for local natural spread and population growth within spatial units. Broad scale incursion dynamics are based on a mechanistic gravity model with a Weibull distribution modification to incorporate a local pest build-up phase. The model uses Markov chain Monte Carlo simulations to infer the probability of colonisation times for discrete spatial units and to estimate connectivity parameters between these units. The hierarchical Bayesian model with observational and ecological components is applied to a surveillance dataset for a spiralling whitefly (Aleurodicus dispersus) invasion in Queensland, Australia. The model structure provides a useful application that draws on surveillance data and ecological knowledge that can be used to manage the risk of pest movement.

The Foraging Ecology of the Mountain Long-Eared Bat Plecotus macrobullaris Revealed with DNA Mini-Barcodes

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A taxonomic guide to the mysids of the South Atlantic Bight.

Following the examination of extensive collections from the National Museum of Natural History (NMNH), the Southeastern Regional Taxonomic Center (SERTC), and other regional institutions, 18 species of the family Mysidae are recognized and described from the South Atlantic Bight (Cape Lookout, North Carolina to Cape Canaveral, Florida). This report includes synonymies of previous records, as well as new species distribution records. Previous regional accounts of Metamysidopsis munda and Metamysidopsis mexicana are attributed to Metamysidopsis swifti. New regional records are established for Amathimysis brattegardi, Heteromysis beetoni, and Siriella thompsonii. Two other species tentatively identified as Amathimysis sp. (nr. serrata) and Mysidopsis sp. (cf. mortenseni) may represent new taxa. Neobathymysis renoculata is included and discussed as a potential regional species. An illustrated key to the species currently known from the South Atlantic Bight is presented. Relevant taxonomic, distributional, and ecological information is also included for each species. (PDF file contains 45 pages.)

Underwater Passive Acoustic Monitoring for Remote Regions, Hawaii Institute of Marine Biology, Coconut Island, Hawaii, February 7-9, 2007: workshop proceedings

The Alliance for Coastal Technologies (ACT) convened a workshop, sponsored by the Hawaii-Pacific and Alaska Regional Partners, entitled Underwater Passive Acoustic Monitoring for Remote Regions at the Hawaii Institute of Marine Biology from February 7-9, 2007. The workshop was designed to summarize existing passive acoustic technologies and their uses, as well as to make strategic recommendations for future development and collaborative programs that use passive acoustic tools for scientific investigation and resource management. The workshop was attended by 29 people representing three sectors: research scientists, resource managers, and technology developers. The majority of passive acoustic tools are being developed by individual scientists for specific applications and few tools are available commercially. Most scientists are developing hydrophone-based systems to listen for species-specific information on fish or cetaceans; a few scientists are listening for biological indicators of ecosystem health. Resource managers are interested in passive acoustics primarily for vessel detection in remote protected areas and secondarily to obtain biological and ecological information. The military has been monitoring with hydrophones for decades;however, data and signal processing software has not been readily available to the scientific community, and future collaboration is greatly needed. The challenges that impede future development of passive acoustics are surmountable with greater collaboration. Hardware exists and is accessible; the limits are in the software and in the interpretation of sounds and their correlation with ecological events. Collaboration with the military and the private companies it contracts will assist scientists and managers with obtaining and developing software and data analysis tools. Collaborative proposals among scientists to receive larger pools of money for exploratory acoustic science will further develop the ability to correlate noise with ecological activities. The existing technologies and data analysis are adequate to meet resource managers' needs for vessel detection. However, collaboration is needed among resource managers to prepare large-scale programs that include centralized processing in an effort to address the lack of local capacity within management agencies to analyze and interpret the data. Workshop participants suggested that ACT might facilitate such collaborations through its website and by providing recommendations to key agencies and programs, such as DOD, NOAA, and I00s. There is a need to standardize data formats and archive acoustic environmental data at the national and international levels. Specifically, there is a need for local training and primers for public education, as well as by pilot demonstration projects, perhaps in conjunction with National Marine Sanctuaries. Passive acoustic technologies should be implemented immediately to address vessel monitoring needs. Ecological and health monitoring applications should be developed as vessel monitoring programs provide additional data and opportunities for more exploratory research. Passive acoustic monitoring should also be correlated with water quality monitoring to ease integration into long-term monitoring programs, such as the ocean observing systems. [PDF contains 52 pages]

A riqueza e diversidade de anfíbios anuros da Serra do Mendanha, Estado do Rio de Janeiro, RJ: grau de conservação da floresta, variação altitudinal e uso de recursos hídricos

Os anfíbios anuros que habitam o bioma Mata Atlântica, especialmente em sua floresta ombrófila densa, são pouco conhecidos sob diversos aspectos de sua ecologia, existindo poucas informações disponíveis na literatura científica. Estes dados estão limitados a poucas localidades, geralmente estudos realizados em fragmentos remanescentes do sudeste brasileiro. A mata bem conservada que recobre os 3300 ha da Serra do Mendanha, apesar de localizada na região metropolitana do Estado do Rio de Janeiro, ainda não tinha sua anurofauna conhecida. No presente estudo, recolhemos informações ecológicas sobre as espécies que habitam a região, especialmente da assembléia encontrada no folhiço que recobre o solo, com o uso de diferentes metodologias: armadilhas de queda; parcelas cercadas; procura visual e auditiva em transecções e encontros ocasionais; assim como dados abióticos do ambiente regional (profundidade do folhiço; níveis de pH; taxa de oxigênio dissolvido; temperaturas do ar e da água; umidade do ar). Exemplares-testemunho foram fixados e depositados na coleção de anfíbios do Museu Nacional, Rio de Janeiro. A anurofauna da Serra do Mendanha é composta por pelo menos 44 espécies que estão distribuídas em 12 famílias, sendo a família Hylidae com o maior número de espécies (50%, n = 22), enquanto que Physalaemus signifer foi a espécie mais abundante (18%, n = 272), sendo habitante do folhiço. A espécie Rhinella ornata contribuiu com a maior biomassa (m = 548 g). Identificamos uma nova espécie de anuro (Brachycephalidae), que também habita o folhiço das cotas altimétricas acima de 700 m. Biogeograficamente a comunidade de anuros da área estudada indicou ser mais similar (68%) com a comunidade da região da Serra da Tiririca e arredores. Comparando-se os três tipo de fisionomias, ou mesohábitats, existentes na Serra do Mendanha, em termos de riqueza e diversidade, a floresta secundária indicou ter os mais elevados índices, seguido pela floresta pouco perturbada e pela monocultura de bananeiras. A assembléia de anuros que habita o folhiço da Serra do Mendanha é composta por nove espécies, que pouco diferiu ao longo de um gradiente altitudinal (0 a 900 m), com o registro das espécies Euparkerella brasiliensis, H. binotatus, Leptodactylus marmoratus e Zachaenus parvulus na maioria das cotas altimétricas. A altitude, a declividade e profundidade do folhiço foram as variáveis abióticas que mais influenciaram na distribuição de abundância e de riqueza de espécies do folhiço. Na estação úmida (setembro a março) a densidade de anuros no folhiço foi de 10,4 ind./100m2, enquanto que na estação seca (abril a agosto) houve uma redução de 34,6% (6,8 ind./100m2). As assembléias de anuros utilizam os recursos hídricos disponíveis na Serra do Mendanha (água da chuva, córregos, fitotelmas, rios e umidade do ar), de diferentes formas, associadas diretamente ao modo reprodutivo de cada espécie. A altitude, a temperatura da água e o pH afetaram a distribuição de espécies de girinos nos diferentes sítios reprodutivos. O modo reprodutivo 1 foi o mais freqüente (n = 18) entre os 14 modos identificados. O estudo de 12 poças (lênticas e lóticas) indicou que estas diferiram consistentemente entre si, seja nas suas dimensões, na composição de suas assembléias de girinos e nos seus componentes abióticos. Diversos predadores de girinos foram encontrados em algumas poças. A assembléia de girinos de cada poça indicou ser moldada pela interação de diferentes fatores ambientais, ecológicos e filogenéticos de cada espécie

全球变化下中国东北样带植物多样性梯度分析及气候-NDVI-植被的关系研究

中国东北样带（NorthEast China Transect, NECT）是位于中纬度温带以降水量作为主要驱动因素的陆地样带。本文的工作以此作为研究平台，利用生态信息系统（Ecological Information System, EIS）以及Microsoft Excel 7.0软件包建立了样带的地理数据库和植物多样性数据库，包括气候数据库、植被数据库、遥感数据库和内蒙内C_4植物数据库以及样带内生态系统特征数据库。在此基础上，主要研究了以下四个方面的内容： 1. 利用Holdridge的生命地带方法对NECT内的生物群区进行了划分。 主要是确定了生物群区间过渡带的位置与宽度，并预测了在全球变化三种模式下NECT内生物群区，尤其是过渡带的变化图景。湿度升高2 ℃后，过渡带的面积都呈扩大化的趋势。森林区对于降水量的变化反应很敏感。荒漠灌丛（即荒漠草原类型）由于其水热条件处于样带内较极端类型，因而对于全球气候变化反应也比较敏感。 2. 研究了NECT内的α、β多样性以及包括生活型、水分生态型、区系地理成分等在内的植物群落特征多样性的梯度变化规律。 研究了样带内的多样性梯度，提出了在样带内存在的α多样性测度问题以及β多样性沿样带的变化规律：样带内由东到西，β多样性逐渐升高，群落内物种被替代的速率变慢;两种植被类型边界上的两个样地之间的相似程度由东到西呈上升趋势;同一类型群落之间的物种周转率比不同类型群落间的物种周转率相对要低。同时将各个环境因子与α、β多样性作了回归分析，找出样带内决定α、β多样性的主要环境因子指标。 样带内沿43.5°N一线附近植物群落的生活型共有17类，水分生态型8类，区系地理成分包括17类，以此为基础分析了群落特征沿样带的变化规律。并探讨了生活型分布的历史地理原因。 3. 对样带气候－NDVI间的关系以及植被－NDVI的关系进行了探讨。 利用来自气象卫星的遥感数据一归一化植被指数（NDVI），和数值化后的样带1:100万植被图进行叠加，找到NECT内每种植被类型对应的NDVI值。样带内共有植被类型147种，反映在NDVI变化上的植被类型有106类。其中，自然植被101种。 影响年均NDVI分布的因子主要有经度、辐射日照百分率及7月温度，与经度呈正相关，与辐射日照时数及7月温度呈负相关。回归方程如下： NDVI = -220.426 + 3.273Lon - 80.338Ratio - 1.962T_7 (R~2 = 0.9714, F = 521.52, p < 0.001) 4. 研究了NECT内的光合功能型。 主要包括内蒙古地区的C_4植物及其生态地理特性。揭标C_4植物的分类群特性、生活型、水分生态型与区系地理成分等生态学特性。C_4植物分布的科属极其集中。C_4光合型为维管植物某些分类群（科、属、种）的特性，为它们固有的遗传特性。推断C_4起源于草本的某些科属。C_4植物为喜热、耐旱的类群。世界种、泛热带种、泛地中海种C_4植物较集中。 样带内的C_3、C_4功能型及其与环境因子的相关性。样带内C_4和C_3光合型植物组成比例由东到西表现出两高两低的趋势。分布主要与年均温和降水量呈显著相关。 提出了一种新的C_3、C_4鉴别方法。即根据野外测定的光合数据建立了C_3、C_4的判别模型： f_1(x) = -1.5493 + 0.1427Pn + 0.1035Tr + 0.3768ΔT + 0.1000Gs f_2(x) = -15.6142 + 1.0542Pn - 0.2503Tr - 0.2957ΔT + 0.6491Gs 最后，综合7个GCMs模型（GFDL，GISS，LLNL，MPI，OSU，UKMOH，UKMOL）的输出结果，利用此结果和本文建立的回归模型，模拟了样带内生物多样性的窨分布格局，并预测了末来全球变化下归一化植被指数NDVI的空间分布格局的变化。

碳、氧稳定同位素分析在古环境研究中的应用

A number of proxy records of paleoenvironment using stable isotopes could show the history of past environmental changes. These archives include peat and lake sediments, loess-paleosot sequence, fossil mammals and stalagmite, and so on. The stable isotopic composition of carbonate and organic matter and frequency magnetic susceptibility from Tianshuigou and Yuanlei loess-palesol sequence can be used to give estimates of the paleoenvironmental history of Dali, and even of the whole Chinese Loess Plateau during the last 250ka. Features of the High Temperature and Large Precipitation Event in the Tibet Plateau and its adjacent area during 40~30kaBP had been studied by Professor Shi Y. In this dissertation, its impact on Chinese Loess Plateau has been discussed again. Carbon and oxygen isotopic ratios, magnetic susceptibility and frequency magnetic susceptibility in Tianshuigou and Yuanlei profiles show that the Event in this area is not so stronger as the Tibet Plateau. The carbon isotopic composition of organic matter in Tianshuigou, Yuanlei, dingcun and Jingcun loess-palesol sequences are indicative of major changes in the paleovagetation between terrace and plain of the Chinese Loess Plateau. Water is one of the most important factors adjusting the relative biomass of C4 plant in terrestrial ecosystems. Stable carbon isotope ratio of vertebrate tooth enamel is used increasingly to reconstruct environmental and ecological information modern and ancient ecosystems. The SI3C value of tooth enamel bioapatites can distinguish between browsers and grazers. Data from typical grassland of Inter Mongolia, the Alpine meadow of Qinghai-Tibet Plateau and the Yaluzangbu Great Canyon indicate that diets of mammals could record the relative biomass of C4 plant only in the C4 dominated ecosystem. In a C3 dominated ecosystem, diet of mammals would include more C3 plants than vegetation. According to Professor Cerling, proxy records from North and South America, Africa and Pakistan show that at the end of the Miocene (between 8Ma to 6 Ma) there was a global expansion of CA biomass, probably when atmospheric CO2 levels declined. Thus, "C4 world" and "CO2 starvation" are put forward. In this dissertation, carbon isotopes of fossil tooth such as Equus sanmeniensis and Hipparion chiai from Linxia, China reveal that there is a C3 dominated ecosystem in the late Miocene. Diets of ancient mammals in Linxia are not evidence of global expansion of C4 biomass.

Biodiversity and molecular evolution of malacostraca

No actual cenário de perda acelerada de biodiversidade, o nosso conhecimento dos ecossistemas marinhos, apesar da sua extensão e complexidade, continua muito inferior ao dos ecossistemas terrestres. A classe Malacostraca (Arthropoda, Crustacea), um grupo dos mais representativos nos ecossistemas marinhos, apresenta um elevado nível de diversidade morfológica e ecológica, mas difícil sua identificação ao nível de espécie requer frequentemente a ajuda de especialistas em taxonomia. A utilização recente do “barcoding” (código de barras do ADN), revelou ser um método rápido e eficaz para a identificação de espécies em diversos grupos de metazoários, incluindo os Malacostraca. No âmbito desta tese foi construída uma base de dados de código de barras de ADN envolvendo 132 espécies de Malacostraca vários locais de amostragem no Atlântico Nordeste e Mediterrâneo. As sequências de ADN mitocondrial provenientes de 601 espécimes formaram, em 95% dos casos, grupos congruentes com as identificações baseadas em características morfológicas. No entanto, foi detectado polimorfismo em seis casos e a divergência intra-específica foi elevada em exemplares pertencentes a duas espécies morfológicas, sugerindo, neste caso, a ocorrência de especiação críptica. Este estudo confirma a utilidade do código de barras de ADN para a identificação de Malacostraca marinhos. Apesar do sucesso obtido, este método apresenta alguns problemas, como por exemplo a possível amplificação de pseudogenes. A ocorrência de pseudogenes e as possíveisabordagens para a detecção e resolução deste tipo de problemas são discutidas com base em casos de estudo: análises dos códigos de barras ADN na espécie Goneplax rhomboides (Crustacea, Decapoda). A análise dos códigos de barras ADN revelou ainda grupos prioritários de decápodes para estudos taxonómicos e sistemáticos, nomeadamente os decápodes dos géneros Plesionika e Pagurus. Neste âmbito são discutidas as relações filogenéticas entre espécies seleccionadas dos géneros Plesionika e Pagurus. Este trabalho aponta para várias questões no âmbito da biodiversidade e evolução molecular da classe Malacostraca que carecem de um maior esclarecimento, podendo ser considerado como a base para estudo futuros. Análises filogenéticas adicionais integrando dados morfológicos e moleculares de um maior número de espécies e de famílias deverão certamente conduzir a uma melhor avaliação da biodiversidade e da evolução dentro da classe.

Probabilistic downscaling of remote sensing data with applications for multi-scale biogeochemical flux modeling

Upscaling ecological information to larger scales in space and downscaling remote sensing observations or model simulations to finer scales remain grand challenges in Earth system science. Downscaling often involves inferring subgrid information from coarse-scale data, and such ill-posed problems are classically addressed using regularization. Here, we apply two-dimensional Tikhonov Regularization (2DTR) to simulate subgrid surface patterns for ecological applications. Specifically, we test the ability of 2DTR to simulate the spatial statistics of high-resolution (4 m) remote sensing observations of the normalized difference vegetation index (NDVI) in a tundra landscape. We find that the 2DTR approach as applied here can capture the major mode of spatial variability of the high-resolution information, but not multiple modes of spatial variability, and that the Lagrange multiplier (γ) used to impose the condition of smoothness across space is related to the range of the experimental semivariogram. We used observed and 2DTR-simulated maps of NDVI to estimate landscape-level leaf area index (LAI) and gross primary productivity (GPP). NDVI maps simulated using a γ value that approximates the range of observed NDVI result in a landscape-level GPP estimate that differs by ca 2% from those created using observed NDVI. Following findings that GPP per unit LAI is lower near vegetation patch edges, we simulated vegetation patch edges using multiple approaches and found that simulated GPP declined by up to 12% as a result. 2DTR can generate random landscapes rapidly and can be applied to disaggregate ecological information and compare of spatial observations against simulated landscapes.

The informational turn in Philosophy: any novelty in the study of Mind?

The concept of information is analyzed starting from Adams' hypothesis in The Informational Turn in Philosophy, according to which there has been a far-reaching turn in Philosophy following the publication of Turing's article "Computing Machinery and Intelligence". Adams maintains that new guidelines are being indicated in philosophical research, having the concept of "information" as the basis for treatment of classical problems, such as the relationships between mind-body, perception-action, and the nature of knowledge, amongst others. Partially agreeing with Adams, we believe, however, that his hypothesis faces difficulties, the most fundamental of which concerns the different meanings given to the concept of information. We argue that even though the concept of information underlying the mechanicist proposal of Turing, according to which "to think is to compute", is indeed being employed in Philosophy, this is not because of its mechanistic nature, but mainly due to the representationist presupposition dominant in this area. From this point of view, the informational turn in philosophy would not provide any great novelty, given that since the earliest days philosophical approaches to the nature of mind have always been mainly representationist. The novelty would not lie specifically in the Turing thesis, but in reflections on the nature of information, especially ecological information, and its relation to action.

Population structure and stock assessment of Hoplias malabaricus (Characiformes: Erythrinidae) caught by artisanal fishermen in river-reservoir transition area in Brazil

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