Application of Entropy and Fractal Dimension Analyses to the Pattern Recognition of Contaminated Fish Responses in Aquaculture

The objective of the work was to develop a non-invasive methodology for image acquisition, processing and nonlinear trajectory analysis of the collective fish response to a stochastic event. Object detection and motion estimation were performed by an optical flow algorithm in order to detect moving fish and simultaneously eliminate background, noise and artifacts. The Entropy and the Fractal Dimension (FD) of the trajectory followed by the centroids of the groups of fish were calculated using Shannon and permutation Entropy and the Katz, Higuchi and Katz-Castiglioni's FD algorithms respectively. The methodology was tested on three case groups of European sea bass (Dicentrarchus labrax), two of which were similar (C1 control and C2 tagged fish) and very different from the third (C3, tagged fish submerged in methylmercury contaminated water). The results indicate that Shannon entropy and Katz-Castiglioni were the most sensitive algorithms and proved to be promising tools for the non-invasive identification and quantification of differences in fish responses. In conclusion, we believe that this methodology has the potential to be embedded in online/real time architecture for contaminant monitoring programs in the aquaculture industry.

Evaluation of comprehensive two-dimensional gas chromatography coupled to rapid scanning quadrupole mass spectrometry for quantitative analysis

Comprehensive two-dimensional gas chromatography (GC x GC) is a powerful technique that provides excellent separation and identification of analytes in highly complex samples with considerable increase in GC peak capacities. However, since second dimension analyses are very fast, detectors with a rapid acquisition rate are required. Over the last years, quite a number of studies have discussed the potential and limitations of the combination GC x GC with a variety of quadrupole mass spectrometers. The present research focuses on the evaluation of qMS effectiveness at a 10,000-amu/s scan speed and 20-Hz scan frequency for the identification (full scan mode acquisition-TIC) and quantification (extracted ion chromatogram) of target pesticide residues in tomato samples. The following MS parameters have been evaluated: number of data points per peak, mass spectrum quality, peak skewing, and sensitivity. The validated proposed GC x GC/qMS method presented satisfactory results in terms of repeatability (coefficient of variation lower than 15%), accuracy (84-117%), and linearity (ranging from 25 to 500 ng/g), while significant enhancement in sensitivity was observed (a factor of around 10) under scan conditions. (C) 2012 Elsevier B.V. All rights reserved.

A piada e a narrativa conversacional de cariz humorístico : um breve estudo comparativo

O Humor é uma das bases da interação social humana e, por conseguinte, uma parte importante das relações que os indivíduos de uma sociedade estabelecem uns com os outros, utilizando-o com as mais variadas intenções. A presente dissertação tem como objetivo analisar nos dois subgéneros narrativos humorísticos - a Piada e a Narrativa Conversacional de Cariz Humorístico - as semelhanças e as diferenças na construção das suas estruturas, na utilização das estratégias interacionais usadas pelos interlocutores durante as interações, bem como alguns elementos avaliativos que traduzem as reações dos intervenientes perante as narrativas ouvidas. Na primeira parte, procedemos à referência das principais linhas teóricas que norteiam o tema do presente trabalho. Neste âmbito, referenciamos os quadros teóricos como o de Raskin (1985) e o de Morais (2010), tendo este último sido utilizado como ferramenta base nas nossas análises. Na segunda parte, analisámos Piadas e Narrativas Conversacionais de Cariz Humorístico, uns retirados do Corpus Morais (2010), outros de um Corpus por nós criado (Furtado (2014)). A partir desta análise constatou-se que (i) a estrutura tanto da Piada como da Narrativa Conversacional de Cariz Humorístico se constrói de forma muito semelhante; (ii) o Ataque na Narrativa Conversacional de Cariz Humorístico se assemelha em muito ao Ataque da Piada; (iii) que o modo como o locutor constrói a Orientação e a Ação na Piada é, de um modo geral, fixo; (iv) que ambos os géneros narrativos contêm formas de qualificação dos enunciados muito semelhantes; (v) que o trigger das Piadas opõe sempre duas ideias distintas, conforme o preconizado por Raskin; (vi) que tanto nas Piadas como nas Narrativas Conversacionais de Cariz Humorístico os interlocutores necessitam de partilhar os mesmos conhecimentos prévios para que o objetivo final do locutor seja alcançado, isto é, o riso.

Fractal dimension and Shannon's entropy analyses of the architectural complexity caused by the inflammatory reactions induced by highly crystalline polyvinyl alcohol) microspheres implanted in subcutaneous tissues of the Wistar rats

The results of the histopathological analyses after the implantation of highly crystalline PVA microspheres in subcutaneous tissues of Wistar rats are here in reported. Three different groups of PVA microparticles were systematically studied: highly crystalline, amorphous, and commercial ones. In addition to these experiments, complementary analyses of architectural complexity were performed using fractal dimension (FD), and Shannon's entropy (SE) concepts. The highly crystalline microspheres induced inflammatory reactions similar to the ones observed for the commercial ones, while the inflammatory reactions caused by the amorphous ones were less intense. Statistical analyses of the subcutaneous tissues of Wistar rats implanted with the highly crystalline microspheres resulted in FD and SE values significantly higher than the statistical parameters observed for the amorphous ones. The FD and SE parameters obtained for the subcutaneous tissues of Wistar rats implanted with crystalline and commercial microparticles were statistically similar. Briefly, the results indicated that the new highly crystalline microspheres had biocompatible behavior comparable to the commercial ones. In addition, statistical tools such as FD and SE analyses when combined with histopathological analyses can be useful tools to investigate the architectural complexity tissues caused by complex inflammatory reactions. © 2012 WILEY PERIODICALS, INC.

The neglected dimension of community liveability : impact on social connectedness and active ageing in higher density accommodation

Purpose This thesis is about liveability, place and ageing in the high density urban landscape of Brisbane, Australia. As with other major developed cities around the globe, Brisbane has adopted policies to increase urban residential densities to meet the main liveability and sustainability aim of decreasing car dependence and therefore pollution, as well as to minimise the loss of greenfield areas and habitats to developers. This objective hinges on urban neighbourhoods/communities being liveable places, which residents do not have to leave for everyday living. Community/neighbourhood liveability is an essential ingredient in healthy ageing in place and has a substantial impact upon the safety, independence and well-being of older adults. It is generally accepted that ageing in place is optimal for both older people and the state. The optimality of ageing in place generally assumes that there is a particular quality to environments or standard of liveability in which people successfully age in place. The aim of this thesis was to examine if there are particular environmental qualities or aspects of liveability that test optimality and to better understand the key liveability factors that contribute to successful ageing in place. Method A strength of this thesis is that it draws on two separate studies to address the research question of what makes high density liveable for older people. In Chapter 3, the two methods are identified and differentiated as Method 1 (used in Paper 1) and Method 2 (used in Papers 2, 3, 4 and 5). Method 1 involved qualitative interviews with 24 inner city high density Brisbane residents. The major strength of this thesis is the innovative methodology outlined in the thesis as Method 2. Method 2 involved a case study approach employing qualitative and quantitative methods. Qualitative data was collected using semi-structured, in-depth interviews and time-use diaries completed by participants during the week of tracking. The quantitative data was gathered using Global Positioning Systems for tracking and Geographical Information Systems for mapping and analysis of participants’ activities. The combination of quantitative and qualitative analysis captured both participants’ subjective perceptions of their neighbourhoods and their patterns of movement. This enhanced understanding of how neighbourhoods and communities function and of the various liveability dimensions that contribute to active ageing and ageing in place for older people living in high density environments. Both studies’ participants were inner-city high density residents of Brisbane. The study based on Method 1 drew on a wider age demographic than the study based on Method 2. Findings The five papers presented in this thesis by publication indicate a complex inter-relationship of the factors that make a place liveable. The first three papers identify what is comparable and different between the physical and social factors of high density communities/neighbourhoods. The last two papers explore relationships between social engagement and broader community variables such as infrastructure and the physical built environments that are risk or protective factors relevant to community liveability, active ageing and ageing in place in high density. The research highlights the importance of creating and/or maintaining a barrier-free environment and liveable community for ageing adults. Together, the papers promote liveability, social engagement and active ageing in high density neighbourhoods by identifying factors that constitute liveability and strategies that foster active ageing and ageing in place, social connections and well-being. Recommendations There is a strong need to offer more support for active ageing and ageing in place. While the data analyses of this research provide insight into the lived experience of high density residents, further research is warranted. Further qualitative and quantitative research is needed to explore in more depth, the urban experience and opinions of older people living in urban environments. In particular, more empirical research and theory-building is needed in order to expand understanding of the particular environmental qualities that enable successful ageing in place in our cities and to guide efforts aimed at meeting this objective. The results suggest that encouraging the presence of more inner city retail outlets, particularly services that are utilised frequently in people’s daily lives such as supermarkets, medical services and pharmacies, would potentially help ensure residents fully engage in their local community. The connectivity of streets, footpaths and their role in facilitating the reaching of destinations are well understood as an important dimension of liveability. To encourage uptake of sustainable transport, the built environment must provide easy, accessible connections between buildings, walkways, cycle paths and public transport nodes. Wider streets, given that they take more time to cross than narrow streets, tend to .compromise safety - especially for older people. Similarly, the width of footpaths, the level of buffering, the presence of trees, lighting, seating and design of and distance between pedestrian crossings significantly affects the pedestrian experience for older people and impacts upon their choice of transportation. High density neighbourhoods also require greater levels of street fixtures and furniture for everyday life to make places more useable and comfortable for regular use. The importance of making the public realm useful and habitable for older people cannot be over-emphasised. Originality/value While older people are attracted to high density settings, there has been little empirical evidence linking liveability satisfaction with older people’s use of urban neighbourhoods. The current study examined the relationships between community/neighbourhood liveability, place and ageing to better understand the implications for those adults who age in place. The five papers presented in this thesis add to the understanding of what high density liveable age-friendly communities/ neighbourhoods are and what makes them so for older Australians. Neighbourhood liveability for older people is about being able to age in place and remain active. Issues of ageing in Australia and other areas of the developed world will become more critical in the coming decades. Creating livable communities for all ages calls for partnerships across all levels of government agencies and among different sectors within communities. The increasing percentage of older people in the community will have increasing political influence and it will be a foolish government who ignores the needs of an older society.

Fractal and complex network analyses of protein molecular dynamics

Based on protein molecular dynamics, we investigate the fractal properties of energy, pressure and volume time series using the multifractal detrended fluctuation analysis (MF-DFA) and the topological and fractal properties of their converted horizontal visibility graphs (HVGs). The energy parameters of protein dynamics we considered are bonded potential, angle potential, dihedral potential, improper potential, kinetic energy, Van der Waals potential, electrostatic potential, total energy and potential energy. The shape of the h(q)h(q) curves from MF-DFA indicates that these time series are multifractal. The numerical values of the exponent h(2)h(2) of MF-DFA show that the series of total energy and potential energy are non-stationary and anti-persistent; the other time series are stationary and persistent apart from series of pressure (with H≈0.5H≈0.5 indicating the absence of long-range correlation). The degree distributions of their converted HVGs show that these networks are exponential. The results of fractal analysis show that fractality exists in these converted HVGs. For each energy, pressure or volume parameter, it is found that the values of h(2)h(2) of MF-DFA on the time series, exponent λλ of the exponential degree distribution and fractal dimension dBdB of their converted HVGs do not change much for different proteins (indicating some universality). We also found that after taking average over all proteins, there is a linear relationship between 〈h(2)〉〈h(2)〉 (from MF-DFA on time series) and 〈dB〉〈dB〉 of the converted HVGs for different energy, pressure and volume.

Signal Characterization using Fractal Dimension

Fractal Dimensions (FD) are popular metrics for characterizing signals. They are used as complexity measuresin signal analysis applications in various fields. However, proper interpretation of such analyses has not been thoroughly addressed. In this paper, we study the effect of various signal properties on FD and interpret results in terms of classical signal processing concepts such as amplitude, frequency,number of harmonics, noise power and signal bandwidth. We have used Higuchi’s method for estimating FDs. This study helps in gaining a better understanding of the FD complexity measure for various signal parameters. Our results indicate that FD is a useful metric in estimating various signal properties. As an application of the FD measure in real world scenario, the FD is used as a feature in discriminating seizures from seizure free intervals in intracranial EEG data recordings and the FD feature has given good discrimination performance.

Selective Homonuclear Decoupling in H-1 NMR: Application to Visualization of Enantiomers in Chiral Aligning Medium and Simplified Analyses of Spectra in Isotropic Solutions

The proton NMR spectral complexity arising due to severe overlap of peaks hampers their analyses in diverse situations, even by the application of two-dimensional experiments. The selective or complete removal of the couplings and retention of only the chemical shift interactions in indirect dimension aids in the simplification of the spectrum to a large extent with little investment of the instrument time. The present study provides precise enantiodiscrimination employing more anisotropic NMR parameters in the chiral liquid crystalline medium and differentiates the overlapped peaks of many organic molecules and peptides dissolved in isotropic solvents.

Signal characterization using fractal dimension

Fractal Dimensions (FD) are one of the popular measures used for characterizing signals. They have been used as complexity measures of signals in various fields including speech and biomedical applications. However, proper interpretation of such analyses has not been thoroughly addressed. In this paper, we study the effect of various signal properties on FD and interpret results in terms of classical signal processing concepts such as amplitude, frequency, number of harmonics, noise power and signal bandwidth. We have used Higuchi's method for estimating FDs. This study may help in gaining a better understanding of the FD complexity measure itself, and for interpreting changing structural complexity of signals in terms of FD. Our results indicate that FD is a useful measure in quantifying structural changes in signal properties.

Development of novel multiple quantummethodologies for the analyses of complex protonNMR spectra of scalar coupled spins

One of the significant advancements in Nuclear Magnetic Resonance spectroscopy (NMR) in combating the problem of spectral complexity for deriving the structure and conformational information is the incorporation of additional dimension and to spread the information content in a two dimensional space. This approach together with the manipulation of the dynamics of nuclear spins permitted the designing of appropriate pulse sequences leading to the evolution of diverse multidimensional NMR experiments. The desired spectral information can now be extracted in a simplified and an orchestrated manner. The indirect detection of multiple quantum (MQ) NMR frequencies is a step in this direction. The MQ technique has been extensively used in the study of molecules aligned in liquid crystalline media to reduce spectral complexity and to determine molecular geometries. Unlike in dipolar coupled systems, the size of the network of scalar coupled spins is not big in isotropic solutions and the MQ 1H detection is not routinely employed,although there are specific examples of spin topology filtering. In this brief review, we discuss our recent studies on the development and application of multiple quantum correlation and resolved techniques for the analyses of proton NMR spectra of scalar coupled spins.

Fractal dimension method for delamination detection in composite beams

A new delaminated composite beam element is formulated for Timoshenko as well as Euler-Bernoulli beam models. Shape functions are derived from Timoshenko functions; this provides a unified formulation for slender to moderately deep beam analyses. The element is simple and easy to implement, results are on par with those from free mode delamination models. Katz fractal dimension method is applied on the mode shapes obtained from finite element models, to detect the delamination in the beam. The effect of finite element size on fractal dimension method of delamination detection is quantified.

Catholicisme et postmodernité : analyses philosophiques à partir de débats publics québécois

Avec la sécularisation, la laïcité et la diversité croissantes de la société québécoise, la place de la religion en général et du catholicisme en particulier se sont vues remises en question. Cette situation a d’ailleurs mené à la mise en place de deux commissions : l’une sur la place de la religion à l’école (1999) et l’autre sur les pratiques d’accommodements reliées aux différences culturelles (2008). Ces deux commissions auront fourni énormément d’informations sur les rapports qu’entretiennent encore les Québécois avec le catholicisme. Cette recherche a donc pour but de faire le point sur certains aspects du catholicisme au Québec à partir d’une perspective reposant principalement sur des instruments heuristiques issus des écrits signés « Jacques Derrida ». Pour ce faire, nous nous appuierons sur les travaux du Groupe de travail sur la religion à l’école, de la consultation générale sur la place de la religion à l’école et de la commission de consultation sur les pratiques d’accommodement reliées aux différences culturelles. Nous posons comme hypothèse que de manière générale, les Québécois entretiennent avec le catholicisme, des rapports « archivaux », c’est-à-dire conditionnés par des perceptions de ce dernier informées par son passé, plutôt que par son présent. De plus, ces perceptions du catholicisme, probablement développées dans le sillage de la Révolution tranquille et peut-être même un peu avant, nourriraient l’existence de « spectres » qui viendraient hanter les rapports des Québécois à tout ce qui touche le religieux et la diversité culturelle. En ce sens, il s’agit d’une dimension essentielle de ce que nous appellerions la « postmodernité » religieuse québécoise. Pour illustrer ce propos, nous mènerons une analyse de contenu documentaire. Premièrement, nous procéderons à l’analyse thématique de centaines de documents (rapports de recherche, rapports officiels, mémoires) déposés lors de ces débats. Le logiciel QDA Miner permettra d’effectuer une analyse documentaire en identifiant les passages thématiques reliés à la recherche. Nous procéderons ensuite à une analyse plus fine de ces extraits sélectionnés à partir de perspectives philosophiques provenant principalement du philosophe Jacques Derrida.

Le reporter comme théoricien : une dimension négligée du journalisme politique

Cette thèse examine les théories politiques profanes qui sont mises de l’avant dans les articles et les reportages des journalistes politiques. Par «théories profanes», nous entendons les constructions intellectuelles informelles qui aident les journalistes à appréhender et à concevoir la vie politique. Nous les définissons ici par opposition aux théories scientifiques des universitaires. Ces théories sont examinées sous trois angles différents, au travers de trois articles scientifiques distincts. Notre principal objectif est de déterminer dans quelle mesure et pour quelles raisons les théories journalistiques profanes convergent ou divergent des théories universitaires scientifiques. Au premier chapitre, nous nous demandons ce que les journalistes font, en nous attardant aux critères sur lesquels ces derniers s’appuient pour analyser la personnalité des chefs de partis politiques. Plus précisément, nous cherchons à savoir si les journalistes tiennent compte des considérations politiques jugées importantes par les citoyens. Afin d’atteindre cet objectif, nous réalisons une analyse de contenu des reportages diffusés dans les grands bulletins d’information télévisés au sujet de l’ex-chef du Parti québécois, André Boisclair. Au second chapitre, nous poussons notre réflexion un cran plus loin en nous demandant ce que les journalistes disent précisément dans les théories qu’ils développent. Pour ce faire, nous examinons les théories développées par les journalistes pour expliquer le comportement des parlementaires. De manière spécifique, nous contrastons les théories académiques de la dissidence politique avec ce qui s’est écrit dans les grands journaux canadiens à l’occasion de quatre votes particulièrement serrés ayant eu lieu à la Chambre des communes à propos de la prolongation de la mission canadienne en Afghanistan et de l’abolition du registre des armes d’épaule. Enfin, nous nous attardons à ce que les journalistes pensent de leurs propres théories, en les interrogeant sur les raisons qui les poussent à mettre ces dernières de l’avant et sur la manière dont ils s’y prennent pour les développer. Nous nous attardons aux mécanismes qui rythment la pensée des journalistes et nous portons notre regard sur les matériaux dont ceux-ci se servent pour construire les théories qu’ils incluent dans leurs reportages. Pour ce faire, nous réalisons des entrevues semi-dirigées avec des journalistes politiques affectés à la couverture de l’élection présidentielle française de 2012. Nos questions portent notamment sur le chemin intellectuel qu’ils parcourent lorsqu’ils tentent de comprendre et d’expliquer le comportement des politiciens, ainsi que sur la façon dont ils conçoivent les campagnes électorales et le rôle qu’ils sont appelés à jouer à l’intérieur de celles-ci. Nos conclusions sont à l’effet que les journalistes construisent bel et bien des théories profanes de la vie politique afin d’aller au-delà des simples comptes rendus factuels et de répondre à ce qu’ils considèrent être une nécessité de leur travail. Les théories qu’ils mettent de l’avant tiennent compte des considérations politiques jugées importantes par les électeurs, et elles ont des traits communs avec certaines des idées sous-tendues par les théories scientifiques des universitaires. Ces théories s’articulent autour des observations que font les journalistes, et des conversations auxquelles ils prennent part ou dont ils sont témoins. Elles reflètent la plupart du temps l’expérience ou le vécu du journaliste. Les théories journalistiques profanes se distinguent toutefois des théories scientifiques en ce qu’elles ne sont ni formalisées, ni explicitement nommées. Elles n’ont pas la sophistication des théories universitaires, et elles sont parfois reléguées à l’arrière-plan de la couverture médiatique au bénéfice d’aspects plus théâtraux de la vie politique. Les journalistes développent par contre des mécanismes pour valider leurs théories. La contribution de cette thèse à l’avancement des connaissances se manifeste sur les plans conceptuel, théorique et empirique. Sur le plan conceptuel, nous étayons davantage le concept des théories journalistiques. Notre thèse permet de mieux comprendre la couverture médiatique de la politique, en mettant en lumière un de ses aspects jusqu’ici négligé par les politologues, soit le fait que les journalistes construisent et utilisent des théories politiques qui leur sont propres pour appréhender l’univers au sein duquel ils évoluent. Sur le plan théorique, nous faisons ressortir les objectifs et les impératifs qui guident les journalistes qui développent ces théories. Enfin, sur le plan empirique, nous donnons pour une rare fois l’occasion aux journalistes de s’exprimer sur la manière dont ils perçoivent leur propre travail.

The social dimension: a neglected policy item in the Bologna Process

Since its beginning in 1999, the Bologna Process has influenced various aspects of higher education in its member countries, e.g., degree structures, mobility, lifelong learning, social dimension and quality assurance. The social dimension creates the focus of this research. The social dimension entered the Bologna Process agenda in 2001. Despite a decade of reforms, it somehow remained as a vague element and received low scholarly attention. This research addresses to this gap. Firstly, different meanings of the social dimension according to the major European policy actors are analysed. Unfolding the understandings of the actors revealed that the social dimension is mostly understood in terms reflecting the diversity of population on the student body accessing to, progressing in and completing higher education, with a special concern on the underrepresented groups. However, it is not possible to observe a similar commonality concerning the actual policy measures to achieve this goal. Divergence occurs with respect to the addressed underrepresented groups, i.e., all underrepresented groups or people without formal qualifications and mature learners, and the values and institutional interests traditionally promoted by these actors. Secondly, the dissertation discusses the reflection of this social dimension understanding at the national level by looking at cases of Finland, Germany and Turkey. The in-depth analyses show an awareness of the social dimension among most of the national Bologna Process actors and a common understanding of the social dimension goals. However, this understanding has not triggered action in any of the countries. The countries acted on areas which they defined problematic before the Bologna Process. Finally, based on these findings the dissertation discusses the social dimension as a policy item that managed to get into the Bologna Process agenda, but neither grew into an implementable policy, nor drop out of it. To this aim, it makes use of the multiple streams framework and explains the low agenda status social dimension with: i. the lack of a pressing problem definition: the lack of clearly defined indicators and a comprehensive monitoring system, ii. the lack of a viable solution alternative: the proposal of developing national strategies and action plans closed the way to develop generic guidelines for the social dimension to be translated into national policy processes, iii. low political perceptivity: the recent trends opt for increasing efficiency, excellence and exclusiveness discourses rather than ensuring equality and inclusiveness iv. high constraints: the social dimension by definition requires more public funding which is less appreciated and strategic constraints of the actors in allocating their resources v. the type of policy entrepreneur: the social dimension is promoted by an international stakeholder, the European Students’ Union, instead of the ministers responsible for higher education The social dimension remains a policy item in the Bologna Process which is noble enough to agree but not urgent enough to act on.