Production of a bioherbicide agent in liquid and solid medium and in a biphasic cultivation system

The use of fungi in weeds control programs depends upon the conidia production in large scale. Therefore, this study aimed to evaluate liquid and solid culture media and the cultivation by biphasic system for the conidia production of Bipolaris euphorbiae Muchovej & Carvalho a specific pathogen of Euphorbia heterophylla. The liquid media were obtained from agro-industrial waste or by-products, and the solid media were prepared with mixtures of grains and grain derivatives. The liquid medium made with sugar cane molasses stood out from the others because it provided great sporulation (23 x 10(4) conidia mL-1 of medium), conidial viability (99.7%), and formation of mycelial fungal biomass (1.26 g 100 mL-1 of medium). On solid media conidial production was markedly higher than in liquid media, especially the medium composed by a blend of sorghum grain (40%) and soybean hulls (60%) where the fungus produced 2.3 x 10(7) conidia g-1 of medium. The cultivation of B. euphorbiae in biphasic system not promoted a significant increase in the production of conidia. The solid media were more effective for the mass production of fungus and mixtures of grains and derivatives were effective for increasing conidia production.

The influence of ripening stage and cultivation system on the total antioxidant activity and total phenolic compounds of yellow passion fruit pulp

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Influence of the cultivation system in the aroma of the volatile compounds and total antioxidant activity of passion fruit

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Production of a bioherbicide agent in liquid and solid medium and in a biphasic cultivation system

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Prevalent fatty acids in cashew nuts obtained from conventional and organic cultivation in different stages of processing

Brazil is one of the three largest producers of fruits in the world, and among those fruit trees, the cashew tree stands out due to the high nutritional and commercial value of its products. During its fruit processing, there are losses in some compounds and few studies address this issue. Over the last decade the conventional system of food production has been substituted for the organic cultivation system, which is a promising alternative source of income given the global demand for healthy food. Therefore, this research aimed to characterize and quantify the prevalent fatty acids found in cashew nuts obtained from conventional and organic cultivation during various stages of processing. The prevalent fatty acids found were palmitic, linoleic, oleic, and stearic acid. The average of these fatty acids were 6.93 ± 0.55; 16.99 ± 0.61; 67.62 ± 1.00 and 8.42 ± 0.55 g/100 g, respectively. There was no reduction in the palmitic, oleic and stearic fatty acid contents during processing. Very little difference was observed between the nuts obtained from conventional and organic cultivation, indicating that the method of cultivation used has little or no influence on the content of cashew nut fatty acids.

Shifting cultivation and forest resources in Nagaland, N.-E. India

Die vorliegende Studie befasst sich mit der Ressourcennachhaltigkeit der traditionellen, auf Wanderfeldbau beruhenden Subsistenzwirtschaft in zwei Dörfern (Hongphoy und Minyakshu) in Nagaland im Nordosten Indiens. Hierbei werden die Cerealien Produktion, der Feuerholz Konsum und auch die Folgen der intensivierten Bewirtschaftung (Forstdegradation und Bodenverarmung) im Hinblick auf das Bevölkerungswachstum diskutiert. Während das traditionelle System des Wanderfeldbaus (Jhum) seit Jahrzehnten die Bedürfnisse der ehemals kopfjagenden Stämme Nagalands erfüllte, ergab unsere Studie durch Interviews und Feldaufnahmen in 2004 und 2005, dass die steigende Nachfrage einer wachsenden Bevölkerung nach Cerealien und Feuerholz als wichtigste Ressourcen der Subsistenzwirtschaft zu einer verkürzten Brachezeit und letztlich der Degradation von Naturressourcen geführt hat: Pro Hektar Ernten sind reduziert und der Zuwachs der Holzvorräte auf den Feldern kann durch die verkürzten Bracheperioden nicht mehr die Feuerholz Nachfrage decken. Eine Nahrungsmittelknappheit wurde durch die Gegenüberstellung des Energiebedarfs einer Person und die jährlichen pro-Kopf Erntemengen und unter Berücksichtigung des Zukaufs von Reis reflektiert: In Hongphoy ergab dies ein Defizit auf Dorfebene von 130 Tonnen Reis, in Minyakshu von 480 Tonnen, die nicht durch Ernten gedeckt werden konnten. Diese Nahrungsmittelknappheit erweist sich vor allem vor dem Hintergrund eines Bevölkerungswachstums von 6.7% und marginalen Einkünften als problematisch. Für fünf verschiedene Waldformationen (zwei Brachewälder, zwei Dorfwälder und ein Naturwald) wurden die unterschiedliche Artenzusammensetzung (Diversität) und Bestandesvolumina durch Forstinventuren beschrieben. Der dem Bestandesvolumen der Brachewälder gegenübergestellte pro-Kopf Feuerholz Bedarf ergab ein jährliches Defizit von 1,81m³ in Hongphoy und 0.05m³ in Minyakshu. Der Unterschied dieses Defizits zwischen beiden Dörfern wurde in einer abweichenden Bestandesstruktur (Dominanz der N2 fixierenden Baumart Alnus nepalensis in den Brachewäldern Minyakshus) begründet. Über den erhobenen Feuerholzbedarf wurde ein theoretischer pro-Kopf Flächenbedarf an Brachewald errechnet, der nötig wäre um den gesamten Feuerholz Bedarf innerhalb des Wanderfeldbau Systems zu decken. Das daraus resultierende Defizit wurde mit den Feuerholzvolumina der Dorfwälder und des verbliebenen Naturwalds gegenüber gestellt. Hieraus ergibt sich die Bedeutung der Feuerholzernte und des Wanderfeldbau als Ursache für die fortschreitende Entwaldung und Forstdegradation in Nagaland. Mit Hilfe dieser Informationen und aktuellen Angaben zum Bevölkerungswachstum werden die Ergebnisse anhand einschlägiger Literatur diskutiert und letztendlich die Nachhaltigkeit und Tragfähigkeit des Wanderfeldbau Systems in dieser Region bestimmt. Mögliche Verbesserungsstrategien um der zunehmenden Ressourcendegradation zu begegnen, werden andiskutiert.

Productivity of beet and roquette cultivation as a function of time of establishing intercropping

With the aim of evaluating the effect of intercropping on the productivity of beet and roquette crops, a study was conducted in the Section of Vegetable and Aromatic-Medicinal Plants, FCAV-UNESP, Jaboticabal/SP. The treatments consisted of co-cultivations of roquette (Cultivada) and beets (Early Wonder) established at 0, 7, 14 and 21 days after the transplanting of beets, and as monocultures of beets and roquette. The experiments were delineated in a randomized block design. The productivity of beets in monoculture was not superior to that obtained with intercropping with roquette. The production of dry mass of roquette with intercropping was less than that with monoculture and the reduction was more marked with more delayed establishment of co-cultivation. Intercropping established at 0 and 7 days after the transplanting of beets was the most efficient, with indices of efficient use of land of 1.26 and 1.27, respectively.

A Texture-based land cover classification for the delineation of a shifting cultivation landscape in the Lao PDR using landscape metrics

The delineation of shifting cultivation landscapes using remote sensing in mountainous regions is challenging. On the one hand, there are difficulties related to the distinction of forest and fallow forest classes as occurring in a shifting cultivation landscape in mountainous regions. On the other hand, the dynamic nature of the shifting cultivation system poses problems to the delineation of landscapes where shifting cultivation occurs. We present a two-step approach based on an object-oriented classification of Advanced Land Observing Satellite, Advanced Visible and Near-Infrared Spectrometer (ALOS AVNIR) and Panchromatic Remote-sensing Instrument for Stereo Mapping (ALOS PRISM) data and landscape metrics. When including texture measures in the object-oriented classification, the accuracy of forest and fallow forest classes could be increased substantially. Based on such a classification, landscape metrics in the form of land cover class ratios enabled the identification of crop-fallow rotation characteristics of the shifting cultivation land use practice. By classifying and combining these landscape metrics, shifting cultivation landscapes could be delineated using a single land cover dataset.

Fertilizers applied to certified organic tomato culture

The tomato culture demands large quantities of mineral nutrients, which are supplied by synthetic fertilizers in the conventional cultivation system. In the organic cultivation system only alternative fertilizers are allowed by the certifiers and accepted as safe for humans and environment. The chemical composition of rice bran, oyster flour, cattle manure and ground charcoal, as well as soils and tomato fruits were evaluated by instrumental neutron activation analysis (INAA). The potential contribution of organic fertilizers to the enrichment of chemical elements in soil and their transfer to fruits was investigated using concentration ratios for fertilizer and soil samples, and also for soil and tomato. Results evidenced that these alternative fertilizers could be taken as important sources of Br, Ca, Ce, K, Na and Zn for the organic tomato culture.

Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices.

Arbuscular mycorrhizal fungi (AMF) are important symbionts of plants that improve plant nutrient acquisition and promote plant diversity. Although within-species genetic differences among AMF have been shown to differentially affect plant growth, very little is actually known about the degree of genetic diversity in AMF populations. This is largely because of difficulties in isolation and cultivation of the fungi in a clean system allowing reliable genotyping to be performed. A population of the arbuscular mycorrhizal fungus Glomus intraradices growing in an in vitro cultivation system was studied using newly developed simple sequence repeat (SSR), nuclear gene intron and mitochondrial ribosomal gene intron markers. The markers revealed a strong differentiation at the nuclear and mitochondrial level among isolates. Genotypes were nonrandomly distributed among four plots showing genetic subdivisions in the field. Meanwhile, identical genotypes were found in geographically distant locations. AMF genotypes showed significant preferences to different host plant species (Glycine max, Helianthus annuus and Allium porrum) used before the fungal in vitro culture establishment. Host plants in a field could provide a heterogeneous environment favouring certain genotypes. Such preferences may partly explain within-population patterns of genetic diversity.

Genome reconstruction and comparative genomics of pneumocystis jirovecii

Pneumocystis jirovecii is a fungus belonging to a basal lineage of the Ascomycotina, the Taphrinomycotina subphylum. It is a parasite specific to humans that dwells primarily in the lung and can cause severe pneumonia in individuals with debilitated immune system. Despite its clinical importance, many aspects of its biology remain poorly understood, at least in part because of the lack of a continuous in vitro cultivation system. The present thesis consists in the genome reconstruction and comparative genomics of P. jirovecii. It is made of three parts: (i) the de novo sequencing of P. jirovecii genome starting from a single broncho- alveolar lavage fluid of a single patient (ii) the de novo sequencing of the genome of the plant pathogen Taphrina deformans, a fungus closely related to P. jirovecii, and (iii) the genome scale comparison of P. jirovecii to other Taphrinomycotina members. Enrichment in P. jirovecii cells by immuno-precipitation, whole DNA random amplification, two complementary high throughput DNA sequencing methods, and in silico sorting and assembly of sequences were used for the de novo reconstruction of P. jirovecii genome from the microbiota of a single clinical specimen. An iterative ad hoc pipeline as well as numerical simulations was used to recover P. jirovecii sequences while purging out contaminants and assembly or amplification chimeras. This strategy produced a 8.1 Mb assembly, which encodes 3,898 genes. Homology searches, mapping on biochemical pathways atlases, and manual validations revealed that this genome lacks (i) most of the enzymes dedicated to the amino acids biosyntheses, and (ii) most virulence factors observed in other fungi, e.g. the glyoxylate shunt pathway and specific peptidases involved in the degradation of the host cell membrane. The same analyses applied to the available genomic sequences from Pneumocystis carinii the species infecting rats and Pneumocystis murina the species infecting mice revealed the same deficiencies. The genome sequencing of T. deformans yielded a 13 Mb assembly, which encodes 5,735 genes. T. deformans possesses enzymes involved plant cell wall degradation, secondary metabolism, the glyoxylate cycle, detoxification, sterol biosynthesis, as well as the biosyntheses of plant hormones such as abscisic acid or indole-3-acetic acid. T. deformans also harbors gene subsets that have counterparts in plant saprophytes or pathogens, which is consistent with its alternate saprophytic and pathogenic lifestyles. Mating genes were also identified. The homothallism of this fungus suggests a mating-type switching mechanism. Comparative analyses indicated that 81% of P. jirovecii genes are shared with eight other Taphrinomycotina members, including T. deformans, P. carinii and P. murina. These genes are mostly involved in housekeeping activities. The genes specific to the Pneumocystis genus represent 8%, and are involved in RNA metabolism and signaling. The signaling is known to be crucial for interaction of Pneumocystis spp with their environment. Eleven percent are unique to P. jirovecii and encode mostly proteins of unknown function. These genes in conjunction with other ones (e.g. the major surface glycoproteins) might govern the interaction of P. jirovecii with its human host cells, and potentially be responsible of the host specificity. P. jirovecii exhibits a reduced genome in size with a low GC content, and most probably scavenges vital compounds such as amino acids and cholesterol from human lungs. Consistently, its genome encodes a large set of transporters (ca. 22% of its genes), which may play a pivotal role in the acquisition of these compounds. All these features are generally observed in obligate parasite of various kingdoms (bacteria, protozoa, fungi). Moreover, epidemiological studies failed to evidence a free-living form of the fungus and Pneumocystis spp were shown to co-evolved with their hosts. Given also the lack of virulence factors, our observations strongly suggest that P. jirovecii is an obligate parasite specialized in the colonization of human lungs, and which causes disease only in individuals with compromised immune system. The same conclusion is most likely true for all other Pneumocystis spp in their respective mammalian host. - Pneumocystis jirovecii est un champignon appartenant à ine branche basale des Ascomycotina, le sous-embranchement des Taphrinomycotina. C'est un parasite spécifique aux humains qui réside principalement dans les poumons, et qui peut causer des pneumonies sévères chez des individus ayant un système immunitaire déficient. En dépit de son importance clinique, de nombreux aspects de sa biologie demeurent,largement méconnus, au moins en partie à cause de l'absence d'un système de culture in vitro continu. Cette thèse traite de la reconstruction du génome et de la génomique comparative de P. jirovecii. Elle comporte trois parties: (i) le séquençage de novo du génome de P. jirovecii à partir d'un lavage broncho-alvéolaire provenant d'un seul patient, (ii) le séquençage de novo du génome d'un champignon pathogène de plante Taphrina deformans qui est phylogénétiquement proche de P. jirovecii, et (iii) la comparaison du génome de P. jirovecii à celui d'autres membres du sous-embranchement des Taphrinomycotina. Un enrichissement en cellules de P. jirovecii par immuno-précipitation, une amplification aléatoire des molécules d'ADN, deux méthodes complémentaires de séquençage à haut débit, un tri in silico et un assemblage des séquences ont été utilisés pour reconstruire de novo le génome de P. jirovecii à partir du microbiote d'un seul échantillon clinique. Un pipeline spécifique ainsi que des simulations numériques ont été utilisés pour récupérer les séquences de P. jirovecii tout en éliminant les séquences contaminants et les chimères d'amplification ou d'assemblage. Cette stratégie a produit un assemblage de 8.1 Mb, qui contient 3898 gènes. Les recherches d'homologies, de cartographie des voies métaboliques et des validations manuelles ont révélé que ce génome est dépourvu (i) de la plupart des enzymes dédiées à la biosynthèse des acides aminés, et (ii) de la plupart des facteurs de virulence observés chez d'autres champignons, par exemple, le cycle du glyoxylate ainsi que des peptidases spécifiques impliquées dans la dégradation de la membrane de la cellule hôte. Les analyses appliquées aux données génomiques disponibles de Pneumocystis carinii, l'espèce infectant les rats, et de Pneumocystis murina, l'espèce infectant les souris, ont révélé les mêmes déficiences. Le séquençage du génome de T. deformans a généré un assemblage de 13.3 Mb qui contient 5735 gènes. T. deformans possède les gènes codant pour les enzymes impliquées dans la dégradation des parois cellulaires des plantes, le métabolisme secondaire, le cycle du glyoxylate, la détoxification, la biosynthèse des stérols ainsi que la biosynthèse d'hormones de plantes telles que l'acide abscissique ou l'acide indole 3-acétique. T. deformans possède également des sous-ensembles de gènes présents exclusivement chez des saprophytes ou des pathogènes de plantes, ce qui est consistent avec son mode de vie alternatif saprophyte et pathogène. Des gènes impliqués dans la conjugaison ont été identifiés. L'homothallisme de ce champignon suggère mécanisme de permutation du type conjuguant. Les analyses comparatives ont démontré que 81% des gènes de P. jirovecii sont présent chez les autres membres du sous-embranchement des Taphrinomycotina. Ces gènes sont essentiellement impliqués dans le métabolisme basai. Les gènes spécifiques au genre Pneumocystis représentent 8%, et sont impliqués dans le métabolisme de l'ARN et la signalisation. La signalisation est connue pour être cruciale pour l'interaction des espèces de Pneumocystis avec leur environnement. Les gènes propres à P. jirovecii représentent 11% et codent en majorité pour des protéines dont la fonction est inconnue. Ces gènes en conjonction avec d'autres (par exemple, les glycoprotéines de surface), pourraient être déterminants dans l'interaction de P. jirovecii avec les cellules de l'hôte humain, et être potentiellement responsable de la spécificité d'hôte. P. jirovecii possède un génome de taille réduite à faible pourcentage en GC et récupère très probablement des composés vitaux comme les acides aminés et le cholestérol à partir des poumons humains. De manière consistante, son génome code pour de nombreux transporteurs (22% de ses gènes), qui pourraient jouer un rôle essentiel dans l'acquisition de ces composés. Ces caractéristiques sont généralement observées chez les parasites obligatoires de plusieurs règnes (bactéries, protozoaires, champignons). De plus, les études épidémiologiques n'ont pas réussi à prouver l'existence d'ime forme vivant librement du champignon. Etant donné également l'absence de facteurs de virulence, nos observations suggèrent que P. jirovecii est un parasite obligatoire spécialisé dans la colonisation des poumons humains, ne causant une maladie que chez des individus ayant un système immunitaire compromis. La même conclusion est très probablement applicable à toutes les autres espèces de Pneumocystis dans leur hôte mammifère respectif.

Culture bag systems for clinical applications of adult human neural crest-derived stem cells

Introduction Facing the challenging treatment of neurodegenerative diseases as well as complex craniofacial injuries such as those common after cancer therapy, the field of regenerative medicine increasingly relies on stem cell transplantation strategies. Here, neural crest-derived stem cells (NCSCs) offer many promising applications, although scale up of clinical-grade processes prior to potential transplantations is currently limiting. In this study, we aimed to establish a clinical-grade, cost-reducing cultivation system for NCSCs isolated from the adult human nose using cGMP-grade Afc-FEP bags. Methods We cultivated human neural crest-derived stem cells from inferior turbinate (ITSCs) in a cell culture bag system using Afc-FEP bags in human blood plasma-supplemented medium. Investigations of viability, proliferation and expression profile of bag-cultured ITSCs were followed by DNA-content and telomerase activity determination. Cultivated ITSCs were introduced to directed in vitro differentiation assays to assess their potential for mesodermal and ectodermal differentiation. Mesodermal differentiation was determined using an enzyme activity assay (alkaline phosphatase, ALP), respective stainings (Alizarin Red S, Von Kossa and Oil Red O), and RT-PCR, while immunocytochemistry and synaptic vesicle recycling were applied to assay neuroectodermal differentiation of ITSCs. Results When cultivated within Afc-FEP bags, ITSCs grew three-dimensionally in a human blood plasma-derived matrix, thereby showing unchanged morphology, proliferation capability, viability and expression profile in comparison to three dimensionally-cultured ITSCs growing in standard cell culture plastics. Genetic stability of bag-cultured ITSCs was further accompanied by unchanged telomerase activity. Importantly, ITSCs retained their potential to differentiate into mesodermal cell types, particularly including ALP-active, Alizarin Red S-, and Von Kossa-positive osteogenic cell types, as well as adipocytes positive in Oil Red O assays. Bag culture further did not affect the potential of ITSCs to undergo differentiation into neuroectodermal cell types coexpressing β-III-tubulin and MAP2 and exhibiting the capability for synaptic vesicle recycling. Conclusions Here, we report for the first time the successful cultivation of human NCSCs within cGMP-grade Afc-FEP bags using a human blood plasma-supplemented medium. Our findings particularly demonstrate the unchanged differentiation capability and genetic stability of the cultivated NCSCs, suggesting the great potential of this culture system for future medical applications in the field of regenerative medicine.

Produtividade, adaptabilidade e estabilidade fenotípica de cultivares de tomateiro sob diferentes condições de ambiente

O objetivo deste trabalho foi estudar o desempenho produtivo, adaptabilidade e estabilidade fenotípica de seis genótipos de tomateiro na região de Marília, SP. Os experimentos foram conduzidos em nove ambientes (seis sob condições de cultivo protegido e três sob condições de céu aberto), com seis genótipos (Carmen, Diva, Donador, Graziela, Vita e HE-295), em blocos casualizados, com quatro repetições. Ocorreram diferenças significativas entre ambientes, e a média geral dos cultivos protegidos superou a dos cultivos a céu aberto quanto à produtividade, apesar de a média geral dos cultivos a céu aberto ser superior quanto ao peso médio de frutos. As cultivares, à exceção de HE-295, demonstraram alta estabilidade, merecendo destaque as cultivares Carmen, Donador e Vita, que tiveram rendimento médio superior ao da média geral, adaptabilidade geral e comportamento previsível em todos os ambientes estudados. Quanto ao peso médio dos frutos, as cultivares Diva e Vita foram as únicas que mostraram ampla adaptabilidade a todos os ambientes, comportamento previsível, além de apresentarem peso médio do fruto superior ao da média geral.

Nitrogen fertilization on intercropping of lettuce and rocket

O trabalho foi conduzido na UNESP, Jaboticabal-SP, de setembro a dezembro de 2006, com objetivo de avaliar o efeito da adubação nitrogenada em consórcio de alface e rúcula. O delineamento experimental foi de blocos casualizados completos, com quatro repetições, sendo os tratamentos arranjados em esquema fatorial 4 x 4 + 2. Os tratamentos resultaram da combinação de quatro doses de N para a alface (0, 65, 130 e 195 kg ha-1) e quatro doses de N para a rúcula (0, 65, 130 e 195 kg ha-1), mais dois tratamentos adicionais, correspondentes aos monocultivos de alface e rúcula. As cultivares utilizadas foram Verônica (alface) e Folha Larga (rúcula). O aumento da dose de N para ambas as culturas, em consórcio, proporcionou incrementos na massa fresca e produtividade de alface e da rúcula e maximizou o índice de eficiência de uso da área (1,84) na dose 127 kg ha-1 de N para a alface e 195 kg ha-1 de N para rúcula.

Influência do tamanho e da forma da semente de milho sobre o desenvolvimento da planta e a produtividade de grãos

Due to the small and the round seeds represent a rather high proportion of an ear, this experiment viewed to study the effects of those factors on seed germinative performance in the field as well as on the plant traits related to grain yield. Six treatment combinations replicated five times were sown in Votuporanga/SP on 08/22/2008. Flat shaped (C) and round shaped (R) seeds were made to go through flat round and oblong hole screens which resulted in the following treatments: 1. C1: seeds remaining on the top of a 23/64 '' round hole screen, 2. C2G: 21/64 '', 3. C3M: 17/64 '' or 16/64 '', 4. R2GM: medium length seeds remaining on the top of 13 x 3/4 '' oblong hole screen, 5. R3M: medium length seeds remaining on a 12 x 3/4 '' (from 1 to 2 mm bigger than R3), and 6. R3: 12 x 3/4 ''. The soil of the experimental area was submitted to a no-till cultivation system and the rows were set 0.6 m apart from one another. Fifteen days after emergence (DAE), the plants were thinned to a population of 66,000 plants/ha. Harvest took place 115 DAE and the mean yield was of 12,498 kg ha(-1). Based on the results it was concluded that only the initial growth of the plants is significantly affected by seed size. Plant traits such as plant height, ear insertion height, culm diameter, number of grains per year, grain weight and size as well as grain yield evaluated 40 or more DAE are not significantly affected by seed size or seed shape.