Nellie Landblom's copybook for beginners in research work; computational procedures used in applied biometrics.

Multigraphed.

Robust regression in biological assay: application to the evaluation of alternative experimental techniques.

Robust Huber type regression and testing of linear hypotheses are adapted to statistical analysis of parallel line and slope ratio assays. They are applied in the evaluation of results of several experiments carried out in order to compare and validate alternatives to animal experimentation based on embryo and cell cultures. Computational procedures necessary for the application of robust methods of analysis used the conversational statistical package ROBSYS. Special commands for the analysis of parallel line and slope ratio assays have been added to ROBSYS.

The use of explicit algorithms and episodic context to teach subtraction to students with learning problems in mathematics /

This research attempted to address the question of the role of explicit algorithms and episodic contexts in the acquisition of computational procedures for regrouping in subtraction. Three groups of students having difficulty learning to subtract with regrouping were taught procedures for doing so through either an explicit algorithm, an episodic content or an examples approach. It was hypothesized that the use of an explicit algorithm represented in a flow chart format would facilitate the acquisition and retention of specific procedural steps relative to the other two conditions. On the other hand, the use of paragraph stories to create episodic content was expected to facilitate the retrieval of algorithms, particularly in a mixed presentation format. The subjects were tested on similar, near, and far transfer questions over a four-day period. Near and far transfer algorithms were also introduced on Day Two. The results suggested that both explicit and episodic context facilitate performance on questions requiring subtraction with regrouping. However, the differential effects of these two approaches on near and far transfer questions were not as easy to identify. Explicit algorithms may facilitate the acquisition of specific procedural steps while at the same time inhibiting the application of such steps to transfer questions. Similarly, the value of episodic context in cuing the retrieval of an algorithm may be limited by the ability of a subject to identify and classify a new question as an exemplar of a particular episodically deflned problem type or category. The implications of these findings in relation to the procedures employed in the teaching of Mathematics to students with learning problems are discussed in detail.

Studies on molecular structure and properties using microwave and infrared spectral data

The major objective of the thesis is essentially to evolve and apply certain computational procedures to evaluate the structure and properties of some simple polyatomic molecules making use of spectroscopic data available from the literature. It must be said that though there is dwindling interest in recent times in such analyses, there exists tremendous scope and utility for attempting such calculations as the precision and reliability of'experimental techniques in spectroscopy have increased vastly due to enormous sophistication of the instruments used for these measurements. In the present thesis an attempt is made to extract maximum amount of information regarding the geometrical structure and interatmic forces of simple molecules from the experimental data on microwave and infrared spectra of these molecules

Studies on the propagation of errors in physical oceanographic computations

The results of an investigation on the limits of the random errors contained in the basic data of Physical Oceanography and their propagation through the computational procedures are presented in this thesis. It also suggest a method which increases the reliability of the derived results. The thesis is presented in eight chapters including the introductory chapter. Chapter 2 discusses the general theory of errors that are relevant in the context of the propagation of errors in Physical Oceanographic computations. The error components contained in the independent oceanographic variables namely, temperature, salinity and depth are deliniated and quantified in chapter 3. Chapter 4 discusses and derives the magnitude of errors in the computation of the dependent oceanographic variables, density in situ, gt, specific volume and specific volume anomaly, due to the propagation of errors contained in the independent oceanographic variables. The errors propagated into the computed values of the derived quantities namely, dynamic depth and relative currents, have been estimated and presented chapter 5. Chapter 6 reviews the existing methods for the identification of level of no motion and suggests a method for the identification of a reliable zero reference level. Chapter 7 discusses the available methods for the extension of the zero reference level into shallow regions of the oceans and suggests a new method which is more reliable. A procedure of graphical smoothening of dynamic topographies between the error limits to provide more reliable results is also suggested in this chapter. Chapter 8 deals with the computation of the geostrophic current from these smoothened values of dynamic heights, with reference to the selected zero reference level. The summary and conclusion are also presented in this chapter.

Certified Rapid Solution of Parametrized Linear Elliptic Equations: Application to Parameter Estimation

We present a technique for the rapid and reliable evaluation of linear-functional output of elliptic partial differential equations with affine parameter dependence. The essential components are (i) rapidly uniformly convergent reduced-basis approximations — Galerkin projection onto a space WN spanned by solutions of the governing partial differential equation at N (optimally) selected points in parameter space; (ii) a posteriori error estimation — relaxations of the residual equation that provide inexpensive yet sharp and rigorous bounds for the error in the outputs; and (iii) offline/online computational procedures — stratagems that exploit affine parameter dependence to de-couple the generation and projection stages of the approximation process. The operation count for the online stage — in which, given a new parameter value, we calculate the output and associated error bound — depends only on N (typically small) and the parametric complexity of the problem. The method is thus ideally suited to the many-query and real-time contexts. In this paper, based on the technique we develop a robust inverse computational method for very fast solution of inverse problems characterized by parametrized partial differential equations. The essential ideas are in three-fold: first, we apply the technique to the forward problem for the rapid certified evaluation of PDE input-output relations and associated rigorous error bounds; second, we incorporate the reduced-basis approximation and error bounds into the inverse problem formulation; and third, rather than regularize the goodness-of-fit objective, we may instead identify all (or almost all, in the probabilistic sense) system configurations consistent with the available experimental data — well-posedness is reflected in a bounded "possibility region" that furthermore shrinks as the experimental error is decreased.

Previsão em tempo atual de cheias com uso de sistema especialista difuso

Sistemas de previsão de cheias podem ser adequadamente utilizados quando o alcance é suficiente, em comparação com o tempo necessário para ações preventivas ou corretivas. Além disso, são fundamentalmente importantes a confiabilidade e a precisão das previsões. Previsões de níveis de inundação são sempre aproximações, e intervalos de confiança não são sempre aplicáveis, especialmente com graus de incerteza altos, o que produz intervalos de confiança muito grandes. Estes intervalos são problemáticos, em presença de níveis fluviais muito altos ou muito baixos. Neste estudo, previsões de níveis de cheia são efetuadas, tanto na forma numérica tradicional quanto na forma de categorias, para as quais utiliza-se um sistema especialista baseado em regras e inferências difusas. Metodologias e procedimentos computacionais para aprendizado, simulação e consulta são idealizados, e então desenvolvidos sob forma de um aplicativo (SELF – Sistema Especialista com uso de Lógica “Fuzzy”), com objetivo de pesquisa e operação. As comparações, com base nos aspectos de utilização para a previsão, de sistemas especialistas difusos e modelos empíricos lineares, revelam forte analogia, apesar das diferenças teóricas fundamentais existentes. As metodologias são aplicadas para previsão na bacia do rio Camaquã (15543 km2), para alcances entre 10 e 48 horas. Dificuldades práticas à aplicação são identificadas, resultando em soluções as quais constituem-se em avanços do conhecimento e da técnica. Previsões, tanto na forma numérica quanto categorizada são executadas com sucesso, com uso dos novos recursos. As avaliações e comparações das previsões são feitas utilizandose um novo grupo de estatísticas, derivadas das freqüências simultâneas de ocorrência de valores observados e preditos na mesma categoria, durante a simulação. Os efeitos da variação da densidade da rede são analisados, verificando-se que sistemas de previsão pluvio-hidrométrica em tempo atual são possíveis, mesmo com pequeno número de postos de aquisição de dados de chuva, para previsões sob forma de categorias difusas.

Application of wavelets to the evaluation of phantom images for mammography quality control

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Entropy variation in isothermal fluid flow considering real gas effects

The present paper concerns on the estimative of the pressure loss and entropy variation in an isothermal fluid flow, considering real gas effects. The 1D formulation is based on the isothermal compressibility module and on the thermal expansion coefficient in order to be applicable for both gas and liquid as pure substances. It is emphasized on the simple methodology description, which establishes a relationship between the formulation adopted for ideal gas and another considering real gas effects. A computational procedure has been developed, which can be used to determine the flow properties in duct with a variable area, where real gas behavior is significant. In order to obtain quantitative results, three virial coefficients for Helium equation of state are employed to determine the percentage difference in pressure and entropy obtained from different formulations. Results are presented graphically in the form of real gas correction factors, which can be applied to perfect gas calculations.

Modelagem computacional de dados magnetotelúricos marinhos 2-D

O presente trabalho tem como objetivo investigar o espalhamento das ondas planas causados pela variação lateral das propriedades físicas das rochas. Essa é uma das questões mais importante para o sucesso da exploração geofísica. O método geofísico usado nesta dissertação foi método magnetotelúrico (MT) e método Magnetotelúrico marinho (mMT). Umas das ferramentas utilizadas foram o método dos elementos finitos, este método é notável pela flexibilidade em resolver numericamente as equações diferenciais para campos eletromagnéticos secundários, gerados por estruturas geológicas com geometrias complexas, sendo utilizado para obter a solução numérica do espalhamento do campo eletromagnético da onda plana por um dique vertical (modelos bidimensionais). Os algoritmos desenvolvidos foram aplicados em diversos modelos de dique vertical, com diferentes parâmetros geoelétricos.

Application of the finite element method in Dentistry

The finite element method (FEM) involves a series of computational procedures to calculate the stress in each element, which performs a model solution. Such a structural analysis allows the determination of stress resulting from external force, pressure, thermal change, and other factors. This method is extremely useful for indicating mechanical aspects of biomaterials and human tissues that can hardly be measured in vivo. The results obtained can then be studied using visualization software within the FEM environment to view a variety of parameters, and to fully identify implications of the analysis. Objective: An overview to show application of FEM in dentistry was undertaken. Literature review: This paper shows the basic concept, advances, advantages, limitations and applications of finite element method (FEM) in dentistry. Conclusion: It is extremely important to verify what the purpose of the study is in order to correctly apply FEM.

Application of hte finite element method in Dentistry

Introduction: The finite element method (FEM) involves a series of computational procedures to calculate the stress in each element, which performs a model solution. Such a structural analysis allows the determination of stress resulting from external force, pressure, thermal change, and other factors. This method is extremely useful for indicating mechanical aspects of biomaterials and human tissues that can hardly be measured in vivo. The results obtained can then be studied using visualization software within the FEM environment to view a variety of parameters, and to fully identify implications of the analysis. Objective: An overview to show application of FEM in dentistry was undertaken. Literature review: This paper shows the basic concept, advances, advantages, limitations and applications of finite element method (FEM) in dentistry. Conclusion: It is extremely important to verify what the purpose of the study is in order to correctly apply FEM.

Gauss-Seidel Estimation of Generalized Linear Mixed Models with Application to Poisson Modeling of Spatially Varying Disease Rates

Generalized linear mixed models (GLMMs) provide an elegant framework for the analysis of correlated data. Due to the non-closed form of the likelihood, GLMMs are often fit by computational procedures like penalized quasi-likelihood (PQL). Special cases of these models are generalized linear models (GLMs), which are often fit using algorithms like iterative weighted least squares (IWLS). High computational costs and memory space constraints often make it difficult to apply these iterative procedures to data sets with very large number of cases. This paper proposes a computationally efficient strategy based on the Gauss-Seidel algorithm that iteratively fits sub-models of the GLMM to subsetted versions of the data. Additional gains in efficiency are achieved for Poisson models, commonly used in disease mapping problems, because of their special collapsibility property which allows data reduction through summaries. Convergence of the proposed iterative procedure is guaranteed for canonical link functions. The strategy is applied to investigate the relationship between ischemic heart disease, socioeconomic status and age/gender category in New South Wales, Australia, based on outcome data consisting of approximately 33 million records. A simulation study demonstrates the algorithm's reliability in analyzing a data set with 12 million records for a (non-collapsible) logistic regression model.

Métodos computacionales para visco-hiperelasticidad anisótropa en grandes deformaciones

El comportamiento mecánico de muchos materiales biológicos y poliméricos en grandes deformaciones se puede describir adecuadamente mediante formulaciones isocóricas hiperelásticas y viscoelásticas. Las ecuaciones de comportamiento elástico y viscoelástico y las formulaciones computacionales para materiales incompresibles isótropos en deformaciones finitas están ampliamente desarrolladas en la actualidad. Sin embargo, el desarrollo de modelos anisótropos no lineales y de sus correspondientes formulaciones computacionales sigue siendo un tema de investigación de gran interés. Cuando se consideran grandes deformaciones, existen muchas medidas de deformación disponibles con las que poder formular las ecuaciones de comportamiento. Los modelos en deformaciones cuadráticas facilitan la implementación en códigos de elementos finitos, ya que estas medidas surgen de forma natural en la formulación. No obstante, pueden dificultar la interpretación de los modelos y llevar a resultados pocos realistas. El uso de deformaciones logarítmicas permite el desarrollo de modelos más simples e intuitivos, aunque su formulación computacional debe ser adaptada a las exigencias del programa. Como punto de partida, en esta tesis se demuestra que las deformaciones logarítmicas representan la extensión natural de las deformaciones infinitesimales, tanto axiales como angulares, al campo de las grandes deformaciones. Este hecho permite explicar la simplicidad de las ecuaciones resultantes. Los modelos hiperelásticos predominantes en la actualidad están formulados en invariantes de deformaciones cuadráticas. Estos modelos, ya sean continuos o microestructurales, se caracterizan por tener una forma analítica predefinida. Su expresión definitiva se calcula mediante un ajuste de curvas a datos experimentales. Un modelo que no sigue esta metodología fue desarrollado por Sussman y Bathe. El modelo es sólo válido para isotropía y queda definido por una función de energía interpolada con splines, la cual reproduce los datos experimentales de forma exacta. En esta tesis se presenta su extensión a materiales transversalmente isótropos y ortótropos utilizando deformaciones logarítmicas. Asimismo, se define una nueva propiedad que las funciones de energía anisótropas deben satisfacer para que su convergencia al caso isótropo sea correcta. En visco-hiperelasticidad, aparte de las distintas funciones de energía disponibles, hay dos aproximaciones computational típicas basadas en variables internas. El modelo original de Simó está formulado en tensiones y es válido para materiales anisótropos, aunque sólo es adecuado para pequeñas desviaciones con respecto al equilibrio termodinámico. En cambio, el modelo basado en deformaciones de Reese y Govindjee permite grandes deformaciones no equilibradas pero es, en esencia, isótropo. Las formulaciones anisótropas en este último contexto son microestructurales y emplean el modelo isótropo para cada uno de los constituyentes. En esta tesis se presentan dos formulaciones fenomenológicas viscoelásticas definidas mediante funciones hiperelásticas anisótropas y válidas para grandes desviaciones con respecto al equilibrio termodinámico. El primero de los modelos está basado en la descomposición multiplicativa de Sidoroff y requiere un comportamiento viscoso isótropo. La formulación converge al modelo de Reese y Govindjee en el caso especial de isotropía elástica. El segundo modelo se define a partir de una descomposición multiplicativa inversa. Esta formulación está basada en una descripción co-rotacional del problema, es sustancialmente más compleja y puede dar lugar a tensores constitutivos ligeramente no simétricos. Sin embargo, su rango de aplicación es mucho mayor ya que permite un comportamiento anisótropo tanto elástico como viscoso. Varias simulaciones de elementos finitos muestran la gran versatilidad de estos modelos cuando se combinan con funciones hiperelásticas formadas por splines. ABSTRACT The mechanical behavior of many polymeric and biological materials may be properly modelled be means of isochoric hyperelastic and viscoelastic formulations. These materials may sustain large strains. The viscoelastic computational formulations for isotropic incompressible materials at large strains may be considered well established; for example Ogden’s hyperelastic function and the visco-hyperelastic model of Reese and Govindjee are well known models for isotropy. However, anisotropic models and computational procedures both for hyperelasticity and viscohyperelasticity are still under substantial research. Anisotropic hyperelastic models are typically based on structural invariants obtained from quadratic strain measures. These models may be microstructurallybased or phenomenological continuum formulations, and are characterized by a predefined analytical shape of the stored energy. The actual final expression of the stored energy depends on some material parameters which are obtained from an optimization algorithm, typically the Levenberg-Marquardt algorithm. We present in this work anisotropic spline-based hyperelastic stored energies in which the shape of the stored energy is obtained as part of the procedure and which (exactly in practice) replicates the experimental data. These stored energies are based on invariants obtained from logarithmic strain measures. These strain measures preserve the metric and the physical meaning of the trace and deviator operators and, hence, are interesting and meaningful for anisotropic formulations. Furthermore, the proposed stored energies may be formulated in order to have material-symmetries congruency both from a theoretical and from a numerical point of view, which are new properties that we define in this work. On the other hand, visco-hyperelastic formulations for anisotropic materials are typically based on internal stress-like variables following a procedure used by Sim´o. However, it can be shown that this procedure is not adequate for large deviations from thermodynamic equilibrium. In contrast, a formulation given by Reese and Govindjee is valid for arbitrarily large deviations from thermodynamic equilibrium but not for anisotropic stored energy functions. In this work we present two formulations for visco-hyperelasticity valid for anisotropic stored energies and large deviations from thermodynamic equilibrium. One of the formulations is based on the Sidoroff multiplicative decomposition and converges to the Reese and Govindjee formulation for the case of isotropy. However, the formulation is restricted to isotropy for the viscous component. The second formulation is based on a reversed multiplicative decomposition. This last formulation is substantially more complex and based on a corotational description of the problem. It can also result in a slightly nonsymmetric tangent. However, the formulation allows for anisotropy not only in the equilibrated and non-equilibrated stored energies, but also in the viscous behavior. Some examples show finite element implementation, versatility and interesting characteristics of the models.

The development of a numerical solution to transport equation /

"Prepared for U.S. Army Engineer District, Mobile."