R2D2 : a Fortran program for two-dimensional chemically reacting, hyperthermal, internal flows.

"January 1980."

On the applicability of the Aris' equivalent sphere in multicomponent reacting systems

The validity of the concept of equivalent sphere introduced by Aris in 1957 to multicomponent reacting systems is investigated in this paper. A network of C6 hydrocarbon reforming reaction and a fixed bed reactor are taken as the model reaction network and the reactor configuration, respectively.

Modeling of ore-forming and geoenvironmental systems: Roles of fluid flow and chemical reaction processes

Ore-forming and geoenviromental systems commonly involve coupled fluid flowand chemical reaction processes. The advanced numerical methods and computational modeling have become indispensable tools for simulating such processes in recent years. This enables many hitherto unsolvable geoscience problems to be addressed using numerical methods and computational modeling approaches. For example, computational modeling has been successfully used to solve ore-forming and mine site contamination/remediation problems, in which fluid flow and geochemical processes play important roles in the controlling dynamic mechanisms. The main purpose of this paper is to present a generalized overview of: (1) the various classes and models associated with fluid flow/chemically reacting systems in order to highlight possible opportunities and developments for the future; (2) some more general issues that need attention in the development of computational models and codes for simulating ore-forming and geoenviromental systems; (3) the related progresses achieved on the geochemical modeling over the past 50 years or so; (4) the general methodology for modeling of oreforming and geoenvironmental systems; and (5) the future development directions associated with modeling of ore-forming and geoenviromental systems.

Allowance for thermodynamic non-ideality in the characterization of protein self-association by frontal exclusion chromatography: hemoglobin revisited

This investigation re-examines theoretical aspects of the allowance for effects of thermodynamic non-ideality on the characterization of protein self-association by frontal exclusion chromatography, and thereby provides methods of analysis with greater thermodynamic rigor than those used previously. Their application is illustrated by reappraisal of published exclusion chromatography data for hemoglobin on the controlled-pore-glass matrix CPG-120. The equilibrium constant of 100/M that is obtained for dimerization of the (02 species by this means is also deduced from re-examination of published studies of concentrated hemoglobin solutions by osmotic pressure and sedimentation equilibrium methods. (C) 2003 Elsevier Science B.V. All rights reserved.

Analytical exclusion chromatography

This review summarizes the development of exclusion chromatography, also termed gel filtration, molecular-sieve chromatography and gel permeation chromatography, for the quantitative characterization of solutes and solute interactions. As well as affording a means of determining molecular mass and molecular mass distribution, the technique offers a convenient way of characterizing solute selfassociation and solute-ligand interactions in terms of reaction stoichiometry and equilibrium constant. The availability of molecular-sieve media with different selective porosities ensures that very little restriction is imposed on the size of solute amenable to study. Furthermore, access to a diverse array of assay procedures for monitoring the column eluate endows analytical exclusion chromatography with far greater flexibility than other techniques from the viewpoint of solute concentration range that can be examined. In addition to its widely recognized prowess as a means of solute separation and purification, exclusion chromatography thus also possesses considerable potential for investigating the functional roles of the purified solutes. (C) 2003 Elsevier Science B.V. All rights reserved.

The development of chromatography for the characterization of protein interactions: a personal perspective

This article reviews the progress of a personal endeavour to develop chromatography as a quantitative procedure for the determination of reaction stoichiometries and equilibrium constants governing protein interactions. As well as affording insight into an aspect of chromatography with which many protein chemists are unfamiliar, it shows the way in which minor adaptations of conventional chromatographic practices have rendered the technique one of the most powerful methods available for the characterization of interactions. That pathway towards quantification is followed from the introduction of frontal gel filtration for the study of protein self-association to the characterization of ligand binding by the biosensor variant of quantitative affinity chromatography.

Simulação numérica da combustão turbulenta de gás natural em câmara cilíndrica

O presente trabalho apresenta uma modelagem detalhada de processos de combustao turbulentos para um jato concentrico de combustıvel e ar. A modelagem é fundamentada nas equacões de conservacão de massa, de quantidade de movimento, de energia e de espécies quımicas. A turbulencia é resolvida pela utilizacão do modelo k- padrão. Dois modelos de reacões quımicas são apresentados. O modelo SCRS – Simple Chemically-Reacting Systems, que assume taxas instantâneas de reacões quımicas. Também é abordado o modelo E-A – Eddy Breakup - Arrhenius, que assume taxas finitas de reacões quımicas. A radiacão térmica, fenômeno de grande importância devido as altas temperaturas alcancadas em processos de combustão,é modelada através do Método das Zonas. O modelo da soma ponderada de gases cinzas – WSGGM,é usado para determinar o espectro de emissão e absorcão dos gases no processo. Para a solucão destas equacões diferenciais, juntamente com os modelos de turbulência, de reaçõoes químicas e radiação térmica, faz-se o uso do Método dos Volumes Finitos. Para validar a modelagem apresentada resolve-se o processo de combustão em uma câmara cilíndrica. A câmara de combustão usada áa mesma abordada no First Workshop on Aerodynamics of Steady State Combustion Chambers and Furnaces, organizado pela ERCORTAC - European Research Community On Flow Turbulence And Combustion, em outubro de 1994, que apresenta dados experimentais de temperatura e concentração das espécies químicas para várias posições de interesse no interior da câmara. Utiliza-se o gás natural como combustível e o ar atmosférico como oxidante. O processo de combustão sem pré-mistura é resolvido para a condição de excesso de combustível de 5 % para ambos os modelos, onde o gás natural é injetado por um duto circular central, e o ar atmosférico por um orifício anular externo a esse duto, no mesmo plano Uma reação química não estagiada é assumida para o modelo SCRS. Para o modelo E-A duas situações são resolvidas: combustão não estagiada, com uma etapa global de reação química; e reação quımica estagiada, com duas etapas globais. Os resultados obtidos com o modelo SCRS para a distribuição de temperaturas, em termos de tendências gerais, são razoáveis. Já as concentrações de espécies químicas não apresentam dados satisfatórios para este modelo. Para o modelo E-A os resultados apresentam boa concordância com os dados experimentais, principalmente para a situação em que o processo de combustão é assumido em duas etapas globais. ´E analisado em detalhe o papel desempenhado pela transferencia de calor por radiacao, com meio participante. Para melhor verificar as trocas de calor, assume-se uma camara de combustao cilındrica com paredes d’agua. A injecao do combustıvel e do oxidante e feita atraves de um queimador central, semelhante ao usado para validar a modelagem, porem com dois orifıcios concentricos para injecao de combustıvel. Nesta situação o efeito do turbilhonamento (swril), assumido como 20 % da velocidade axial de entrada, sobre a injecao de ar e computado atraves da condicao contorno da equacao de conservacao da quantidade de movimento angular. Nesta fase apenas o modelo E-A, com duas etapas globais de reacoes quımicas, e considerado, ja que o mesmo apresenta os melhores resultados. O processo de combustao e simulado com e sem a presenca da radiacao termica. Verifica-se que a presenca da radiacao termica homogeneiza a temperatura dos gases no interior da camara. Com isso verifica-se tambem alterações nas taxas de reacoes quımicas, modificando a magnitude das fracoes das especies quımicas Quando a radiacao termica e considerada efeitos de extinção local da chama sao verificados nas regioes de temperaturas mais altas, diminuindo o consumo de oxigenio e aumentando a producao de monoxido de carbono, caracterizando assim uma combustao incompleta. Em algumas situacoes tem-se uma variacao de temperatura de ate 500 K, a montante da chama. A radiacao termica tambem aumenta a taxa de transferencia de calor dos gases quentes para as paredes da camara, e desta para o seu exterior. Com os resultados obtidos a partir desta modelagem e possıvel determinar o perfil da zona de combustao, a distribuicao de concentracoes de especies quımicas, o campo de velocidades e as taxas de transferencia de calor para as paredes da camara de combustao, total, por conveccao superficial e por radiacao. Estes resultados sao de extrema importancia para prever a performance de camaras de combustao, assim como auxiliar na sua otimizacao.

The Equilibrium Flux Method for the calculation of flows with non-equilbrium chemical reactions

The Equilibrium Flux Method [1] is a kinetic theory based finite volume method for calculating the flow of a compressible ideal gas. It is shown here that, in effect, the method solves the Euler equations with added pseudo-dissipative terms and that it is a natural upwinding scheme. The method can be easily modified so that the flow of a chemically reacting gas mixture can be calculated. Results from the method for a one-dimensional non-equilibrium reacting flow are shown to agree well with a conventional continuum solution. Results are also presented for the calculation of a plane two-dimensional flow, at hypersonic speed, of a dissociating gas around a blunt-nosed body.

Non-Equilibrium Reaction Rates in the Macroscopic Chemistry Method for DSMC Calculations

The Direct Simulation Monte Carlo (DSMC) method is used to simulate the flow of rarefied gases. In the Macroscopic Chemistry Method (MCM) for DSMC, chemical reaction rates calculated from local macroscopic flow properties are enforced in each cell. Unlike the standard total collision energy (TCE) chemistry model for DSMC, the new method is not restricted to an Arrhenius form of the reaction rate coefficient, nor is it restricted to a collision cross-section which yields a simple power-law viscosity. For reaction rates of interest in aerospace applications, chemically reacting collisions are generally infrequent events and, as such, local equilibrium conditions are established before a significant number of chemical reactions occur. Hence, the reaction rates which have been used in MCM have been calculated from the reaction rate data which are expected to be correct only for conditions of thermal equilibrium. Here we consider artificially high reaction rates so that the fraction of reacting collisions is not small and propose a simple method of estimating the rates of chemical reactions which can be used in the Macroscopic Chemistry Method in both equilibrium and non-equilibrium conditions. Two tests are presented: (1) The dissociation rates under conditions of thermal non-equilibrium are determined from a zero-dimensional Monte-Carlo sampling procedure which simulates ‘intra-modal’ non-equilibrium; that is, equilibrium distributions in each of the translational, rotational and vibrational modes but with different temperatures for each mode; (2) The 2-D hypersonic flow of molecular oxygen over a vertical plate at Mach 30 is calculated. In both cases the new method produces results in close agreement with those given by the standard TCE model in the same highly nonequilibrium conditions. We conclude that the general method of estimating the non-equilibrium reaction rate is a simple means by which information contained within non-equilibrium distribution functions predicted by the DSMC method can be included in the Macroscopic Chemistry Method.

Reactive electrophile species.

The interest in reactive electrophile species (RES) stems largely from the fact that they can have powerful biological activities. RES stimulate the expression of cell survival genes as well many other genes commonly upregulated in environmental stress and pathogenesis. RES levels must be carefully controlled in healthy cells but their formation and destruction during stress is of great interest. Unlike many 'classical' signals and hormones, RES can potentially affect gene expression at all levels by chemically reacting with nucleic acids, proteins and small molecules as well as by indirectly lowering pools of cellular reductants. Recent works involving genetic approaches have begun to provide compelling evidence that, although excess RES production can lead to cell damage, lower levels of RES may modulate the expression of cell survival genes and may actually contribute to survival during severe stress.

Cinética de sinterização do combustível nuclear 'UO IND. 2.'7%'Gd IND.2''O IND. 3': cálculo da curva mestre de sinterização

Pós-graduação em Ciência e Tecnologia de Materiais - FC

Charge transfer reactions of organic ions containing oxygen: Correlation between reaction energetics and cross sections

Cross sections for charge transfer reactions of organic ions containing oxygen have been obtained using time-of-flight techniques. Charge transfer cross sections have been determined for reactions of 2.0 to 3.4 keV ions produced by electron impact ionization of oxygen containing molecules such as methanol, ethanal and ethanol. Experimental cross section magnitudes have been correlated with reaction energy defects computed from ion recombination energies and target ionization energies. Large cross sections are observed for reacting systems with small energy defects.

Critical radius for hot-jet ignition of hydrogen-air mixtures

This study addresses deflagration initiation of lean and stoichiometric hydrogen–air mixtures by the sudden discharge of a hot jet of their adiabatic combustion products. The objective is to compute the minimum jet radius required for ignition, a relevant quantity of interest for safety and technological applications. For sufficiently small discharge velocities, the numerical solution of the problem requires integration of the axisymmetric Navier–Stokes equations for chemically reacting ideal-gas mixtures, supplemented by standard descriptions of the molecular transport terms and a suitably reduced chemical-kinetic mechanism for the chemistry description. The computations provide the variation of the critical radius for hot-jet ignition with both the jet velocity and the equivalence ratio of the mixture, giving values that vary between a few tens microns to a few hundred microns in the range of conditions explored. For a given equivalence ratio, the critical radius is found to increase with increasing injection velocities, although the increase is only moderately large. On the other hand, for a given injection velocity, the smallest critical radius is found at stoichiometric conditions.

Binomial leap methods for simulating stochastic chemical kinetics

This paper discusses efficient simulation methods for stochastic chemical kinetics. Based on the tau-leap and midpoint tau-leap methods of Gillespie [D. T. Gillespie, J. Chem. Phys. 115, 1716 (2001)], binomial random variables are used in these leap methods rather than Poisson random variables. The motivation for this approach is to improve the efficiency of the Poisson leap methods by using larger stepsizes. Unlike Poisson random variables whose range of sample values is from zero to infinity, binomial random variables have a finite range of sample values. This probabilistic property has been used to restrict possible reaction numbers and to avoid negative molecular numbers in stochastic simulations when larger stepsize is used. In this approach a binomial random variable is defined for a single reaction channel in order to keep the reaction number of this channel below the numbers of molecules that undergo this reaction channel. A sampling technique is also designed for the total reaction number of a reactant species that undergoes two or more reaction channels. Samples for the total reaction number are not greater than the molecular number of this species. In addition, probability properties of the binomial random variables provide stepsize conditions for restricting reaction numbers in a chosen time interval. These stepsize conditions are important properties of robust leap control strategies. Numerical results indicate that the proposed binomial leap methods can be applied to a wide range of chemical reaction systems with very good accuracy and significant improvement on efficiency over existing approaches. (C) 2004 American Institute of Physics.

A need for caution in the use of frontal analysis continuous capillary electrophoresis for the determination of ligand binding data

Attention is drawn to a need for caution in the determination of binding data for protein-polyelectrolyte interactions by frontal analysis continuous capillary electrophoresis (FACCE). Because the method is valid only for systems involving comigration of complex(es) and slower-migrating reactant, establishing conformity with that condition is clearly a prerequisite for its application. However, that requirement has not been tested in any published studies thus far. On the basis of calculated FACCE patterns, presented to illustrate features by which such comigration of complex(es) and slower-migrating reactant can be identified, the form of the published pattern for a P-lactoglobulin-poly(styrenesulfonate) mixture does not seem to signify the migration behavior required to justify its consideration in such terms. Additional experimental studies are therefore needed to ascertain the validity of FACCE as a means of determining binding data for the characterization of protein-polyelectrolyte interactions. (c) 2005 Elsevier Inc. All rights reserved.