Genotypic comparison of Pantoea agglomerans plant and clinical strains

Pantoea agglomerans strains are among the most promising biocontrol agents for avariety of bacterial and fungal plant diseases, particularly fire blight of apple and pear. However, commercial registration of P. agglomerans biocontrol products is hampered because this species is currently listed as a biosafety level 2 (BL2) organism due to clinical reports as an opportunistichuman pathogen. This study compares plant-origin and clinical strains in a search for discriminating genotypic/phenotypic markers using multi-locus phylogenetic analysis and fluorescent amplified fragment length polymorphisms (fAFLP) fingerprinting.Results: Majority of the clinical isolates from culture collections were found to be improperly designated as P. agglomerans after sequence analysis. The frequent taxonomic rearrangements underwent by the Enterobacter agglomerans/Erwinia herbicola complex may be a major problem in assessing clinical associations within P. agglomerans. In the P. agglomerans sensu stricto (in the stricter sense) group, there was no discrete clustering of clinical/biocontrol strains and no marker was identified that was uniquely associated to clinical strains. A putative biocontrol-specific fAFLP marker was identified only in biocontrol strains. The partial ORF located in this band corresponded to an ABC transporter that was found in all P. agglomerans strains. Conclusion: Taxonomic mischaracterization was identified as a major problem with P.agglomerans, and current techniques removed a majority of clinical strains from this species. Although clear discrimination between P. agglomerans plant and clinical strains was not obtained with phylogenetic analysis, a single marker characteristic of biocontrol strains was identified whichmay be of use in strain biosafety determinations. In addition, the lack of Koch's postulate fulfilment, rare retention of clinical strains for subsequent confirmation, and the polymicrobial nature of P. agglomerans clinical reports should be considered in biosafety assessment of beneficial strains in this species

Discrepancies between clinical diagnoses and autopsy findings

Autopsy examination is considered to be an essential element for medical auditing and teaching. Despite the significant progress in diagnostic procedures, autopsy has not always confirmed the clinical diagnosis. In the present study, we compared the diagnosis recorded on medical charts with reports of 96 autopsies performed at the University Teaching Hospital of the Faculdade de Medicina de Botucatu, Botucatu, SP, Brazil, between 1975 and 1982, and of 156 autopsies performed at the same institution between 1992 and 1996. The clinical diagnosis of the basic cause of death was confirmed at autopsy in 77% of cases. The percent confirmation fell to 60% when the immediate terminal cause of death was considered, and in 25% of cases, the terminal cause was only diagnosed at autopsy. The discrepancies between clinical and autopsy diagnosis were even larger for secondary diagnoses: 50% of them were not suspected upon clinical diagnosis. Among them, we emphasize the diagnosis of venous thromboses (83%), pulmonary embolisms (80%), bronchopneumonias (46%) and neoplasias (38%). Iatrogenic injuries were very frequent, and approximately 90% of them were not described in clinical reports. Our results suggest that highly sensitive and specific diagnostic tests are necessary but cannot substitute the clinical practice for the elaboration of correct diagnoses.

Genotypic comparison of Pantoea agglomerans plant and clinical strains

Pantoea agglomerans strains are among the most promising biocontrol agents for a variety of bacterial and fungal plant diseases, particularly fire blight of apple and pear. However, commercial registration of P. agglomerans biocontrol products is hampered because this species is currently listed as a biosafety level 2 (BL2) organism due to clinical reports as an opportunistic human pathogen. This study compares plant-origin and clinical strains in a search for discriminating genotypic/phenotypic markers using multi-locus phylogenetic analysis and fluorescent amplified fragment length polymorphisms (fAFLP) fingerprinting. Results: Majority of the clinical isolates from culture collections were found to be improperly designated as P. agglomerans after sequence analysis. The frequent taxonomic rearrangements underwent by the Enterobacter agglomerans/Erwinia herbicola complex may be a major problem in assessing clinical associations within P. agglomerans. In the P. agglomerans sensu stricto (in the stricter sense) group, there was no discrete clustering of clinical/biocontrol strains and no marker was identified that was uniquely associated to clinical strains. A putative biocontrol-specific fAFLP marker was identified only in biocontrol strains. The partial ORF located in this band corresponded to an ABC transporter that was found in all P. agglomerans strains. Conclusion: Taxonomic mischaracterization was identified as a major problem with P. agglomerans, and current techniques removed a majority of clinical strains from this species. Although clear discrimination between P. agglomerans plant and clinical strains was not obtained with phylogenetic analysis, a single marker characteristic of biocontrol strains was identified which may be of use in strain biosafety determinations. In addition, the lack of Koch's postulate fulfilment, rare retention of clinical strains for subsequent confirmation, and the polymicrobial nature of P. agglomerans clinical reports should be considered in biosafety assessment of beneficial strains in this species

Discrepancies between clinical diagnoses and autopsy findings

Autopsy examination is considered to be an essential element for medical auditing and teaching. Despite the significant progress in diagnostic procedures, autopsy has not always confirmed the clinical diagnosis. In the present study, we compared the diagnosis recorded on medical charts with reports of 96 autopsies performed at the University Teaching Hospital of the Faculdade de Medicina de Botucatu, Botucatu, SP, Brazil, between 1975 and 1982, and of 156 autopsies performed at the same institution between 1992 and 1996. The clinical diagnosis of the basic cause of death was confirmed at autopsy in 77% of cases. The percent confirmation fell to 60% when the immediate terminal cause of death was considered, and in 25% of cases, the terminal cause was only diagnosed at autopsy. The discrepancies between clinical and autopsy diagnosis were even larger for secondary diagnoses: 50% of them were not suspected upon clinical diagnosis. Among them, we emphasize the diagnosis of venous thromboses (83%), pulmonary embolisms (80%), bronchopneumonias (46%) and neoplasias (38%). Iatrogenic injuries were very frequent, and approximately 90% of them were not described in clinical reports. Our results suggest that highly sensitive and specific diagnostic tests are necessary but cannot substitute the clinical practice for the elaboration of correct diagnoses.

Molecular Identification of Nocardia Isolates from Clinical Samples and an Overview of Human Nocardiosis in Brazil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Validity and clinical significance of biomechanical testing of implant/bone interface

Purpose: The aim of this paper was to review the clinical literature on the Resonance frequency analysis (RFA) and Periotest techniques in order to assess the validity and prognostic value of each technique to detect implants at risk for failure. Material and methods: A search was made using the PubMed database to find clinical studies using the RFA and/or Periotest techniques. Results: A limited number of clinical reports were found. No randomized-controlled clinical trials or prospective cohort studies could be found for validity testing of the techniques. Consequently, only a narrative review was prepared to cover general aspects of the techniques, factors influencing measurements and the clinical relevance of the techniques. Conclusions: Factors such as bone density, upper or lower jaw, abutment length and supracrestal implant length seem to influence both RFA and Periotest measurements. Data suggest that high RFA and low Periotest values indicate successfully integrated implants and that low/decreasing RFA and high/increasing Periotest values may be signs of ongoing disintegration and/or marginal bone loss. However, single readings using any of the techniques are of limited clinical value. The prognostic value of the RFA and Periotest techniques in predicting loss of implant stability has yet to be established in prospective clinical studies. To cite this article: Aparicio C, Lang N P, Rangert B. Validity and clinical significance of biomechanical testing of implant/bone interface. Clin. Oral Imp. Res., 17 (Suppl. 2), 2006; 2-7.

Free anteromedial thigh flap: clinical application and review of literature

The anteromedial thigh (AMT) flap is reviewed in terms of its vascular anatomy and previous clinical reports in the literature. Our own series of 5 patients treated with this flap for defects in the head and neck region and lower extremity is presented. Although several authors controversially discussed vasculature, we constantly found the pedicle as an emerging septocutaneous perforator at a point where the medial border of the rectus femoris muscle is crossed by the sartorius muscle. In all 5 patients, the AMT flap provided stable coverage with no flap loss. Based on our findings, we conclude that the anteromedial thigh flap offers all the advantages of fasciocutaneous flaps. Therefore, we recommend this flap as an alternative for defects requiring coverages of thin to moderate skin thickness. However, it should be remembered that variations in vascular anatomy are possible.

Understanding uveitis, Clinical Center.

Mode of access: Internet.

Clinical reporting by occupational therapists and speech pathologists: Therapists' intentions and parental satisfaction

This study employed a qualitative research design to explore therapists' and parents' perspectives of paediatric occupational therapy and speech pathology assessment reports. Aims of the study were to explore the intentions of therapists when writing reports, to expand upon existing literature on parental satisfaction and preferences with respect to paediatric clinical reports, to highlight documentation practices that would serve to maximize parental use of allied health reports, and to develop specific guidelines on how reports can be written to ensure they are useful and beneficial to therapists and parents. Participants were 15 parents of children who had been assessed at 1 of 2 university clinics and subsequently received a written report, and 11 therapists employed at the same university clinics. Questionnaires were used to seek information from therapists concerning the purpose of assessment reports and essential aspects to include when writing reports for parents. In-depth interviews were used to seek information about how understandable and beneficial clinical reports were to parents. The data were subjected to thematic analysis. From comments of therapists' intentions and parents' stated needs, and in accordance with literature reviewed, guidelines were identified for the production of parent-oriented reports. Conclusions drawn from this study can be specifically applied to services producing paediatric occupational therapy or speech pathology assessment reports, but are widely relevant to paediatric allied health services. (author abstract)

Midazolam reduces the selective activation of the rhinal cortex by contextual fear stimuli

Independent brain circuits appear to underlie different forms of conditioned fear, depending on the type of conditioning used, such as a context or explicit cue paired with footshocks. Several clinical reports have associated damage to the medial temporal lobe (MTL) with retrograde amnesia. Although a number of studies have elucidated the neural circuits underlying conditioned fear, the involvement of MTL components in the aversive conditioning paradigm is still unclear. To address this issue, we assessed freezing responses and Fos protein expression in subregions of the rhinal cortex and ventral hippocampus of rats following exposure to a context, light or tone previously paired with footshock (Experiment 1). A comparable degree of freezing was observed in the three types of conditioned fear, but with distinct patterns of Fos distribution. The groups exposed to cued fear conditioning did not show changes in Fos expression, whereas the group subjected to contextual fear conditioning showed selective activation of the ectorhinal (Ect), perirhinal (Per), and entorhinal (Ent) cortices, with no changes in the ventral hippocampus. We then examined the effects of the benzodiazepine midazolam injected bilaterally into these three rhinal subregions in the expression of contextual fear conditioning (Experiment 2). Midazolam administration into the Ect, Per, and Ent reduced freezing responses. These findings suggest that contextual and explicit stimuli endowed with aversive properties through conditioning recruit distinct brain areas, and the rhinal cortex appears to be critical for storing context-, but not explicit cue-footshock, associations. (C) 2010 Elsevier B.V. All rights reserved.

Linfoma de células B localizado na cavidade oral num felídeo – Caso Clínico

Um felídeo de 14 anos europeu comum foi apresentado à consulta com história clínica de 1 mês de diminuição de apetite, halitose e deformação facial. O seu estado imunitário foi negativo para FIV e FELV. Os resultados hematológicos e bioquímicos revelaram apenas um aumento de globulinas séricas e a punção aspirativa de gulha fina revelou linfoma localizado sem sinais de envolvimento sistémico nos exames complementares. A cirurgia foi recomendada e consistiu em maxilectomia rostral unilateral, excisão labial, enxerto labial de avanço e colocação de tubo esofágico. O resultado histopatológico revelou linfoma de baixo índice mitótico e os exames imunohistoquímicos revelaram positividade ao marcador CD79a, um marcador de células B. O tumor foi classificado em Estádio I pelo sistema de estadiamento de linfoma felino. Apesar dos resultados histopatológicos sugerirem uma resposta pobre à quimioterapia, iniciou-se um protocolo terapêutico com ciclofosfamida, vincristina e prednisolona. Dois meses após o diagnóstico e seis semanas após início de quimioterapia o animal revelou anorexia e no exame ecográfico de controlo foram detectadas metástases. O gato foi hospitalizado e morreu uma semana depois. O prognóstico de linfoma localizado no gato é desconhecido devido à sua rara ocorrência. Está recomendado o controlo local do tumor com cirurgia ou radioterapia combinadas ou não com quimioterapia. Apesar da sobrevivência do animal ter sido breve após o tratamento cirúrgico os proprietários ficaram satisfeitos com o aumento de qualidade de vida após cirurgia.

Proventricular Intussusception in a yellow Rosella (Platycercus Flaveolus)

A intussuscepção intestinal ocorre quando um segmento proximal do tracto digestivo (intussuscepto) telescopa dentro do segmento distal (intussuscepto). Este tipo de patologia é comum no tracto intestinal dos mamíferos. O autor testemunhou um caso raro de intussuscepção do proventrículo no ventrículo numa Rosela amarela (Platycercus flaveolus). Encontra aqui uma descrição do caso clínico.

Alergia às Fórmulas de Leite Extensamente Hidrolisadas - 3 Casos Clínicos

A alergia às proteínas do leite de vaca (APLV) é a alergia alimentar mais frequente em idade pediátrica. O tratamento consiste na evicção das proteínas do leite de vaca e seus derivados, sendo habitualmente utilizadas fórmulas lácteas extensamente hidrolisadas (FEH). No entanto, mesmo estas podem conter péptidos com potencial alergénico. Apresentam-se três casos clínicos de alergia às FEH incluindo a abordagem diagnóstica e terapêutica. Três crianças, do sexo masculino, com APLV IgE mediada (testes cutâneos por prick para leite e fracções e prova de provocação positiva) diagnosticada nos primeiros meses de vida. Todas as crianças foram tratadas numa fase inicial da doença com uma FEH. Um dos casos manteve sintomas e os restantes mantiveram um periodo variável de tolerância, de alguns dias até 4 meses, após o que reiniciaram sintomas de alergia. Duas crianças apresentavam testes cutâneos positivos para as FEH. Em 2 casos foi introduzido leite de soja, como leite alternativo, com intolerância. Finalmente, nos 3 casos, iniciou-se uma fórmula láctea de aminoácidos, obtendo-se uma boa evolução clínica. As FEH nem sempre são toleradas em crianças com APLV, justificando a necessidade de outras medidas terapêuticas; nestas situações, o leite de soja não parece constituir uma alternativa adequada. Desde há poucos anos estão disponíveis em Portugal fórmulas de aminoácidos, que se revelam alternativas seguras em caso de alergia às FEH. Não são, no entanto, indicadas como terapêutica de primeira linha na APLV, uma vez que na nossa prática os casos de alergia às FEH são raros e estas fórmulas constituem uma alternativa dietética extremamente dispendiosa.

Sistema de recomendação à prevenção odontológica, ortodontia e higiene oral

A tecnologia está em constante evolução e os benefícios, em diversas áreas, que ela nos traz são imensos. Uma das áreas que tem vindo a usufruir desta evolução é a medicina. Os avanços na tecnologia médica têm permitido aos médicos diagnosticar e tratar melhor os seus pacientes. O seu objetivo não é substituir o médico mas sim aconselhá-los e ajudá-los a tomar a melhor decisão face ao caso clínico que possam ter em mãos. Os sistemas de informação estão já tão “entrelaçados” com as práticas médicas que a ideia de uma instituição de prestação de cuidados médicos não os possuir é impensável. Isto porque a informação que estes sistemas processam diariamente é imensa e variadíssima (indo desde relatórios clínicos, a exames efetuados entre outros) para cada utente. As doenças orais fazem parte do grupo de patologias que afetam o maior número de pessoas no mundo. As ações preventivas para estes sintomas devem fazer parte da higiene diária dos indivíduos logo desde os primeiros anos de vida. Assim a aplicação apresentada nesta tese teve como objetivo a sensibilização para uma prática de higiene oral cuidada e constante. Teve também como objetivo a implementação de funcionalidades para gestão de dados dos pacientes da clínica, nomeadamente para o histórico clínico, ficando este armazenado numa anamnese. Para a implementação do presente projeto procedeu-se a um estudo prévio do estado da arte e ao levantamento de requisitos. Estes foram definidos através de reuniões de trabalho onde se analisou as necessidades da clínica com o objetivo de encontrar as soluções que melhor se enquadravam a cada caso. Para garantir que as metas propostas foram alcançadas, foram realizados inquéritos verificando assim o sucesso da aplicação.

Mucormicose Naso-Sinusal - Casos Clínicos e Revisão da Literatura

A mucormicose e uma infecção fúngica potencialmente grave,causada por fungo saprófita. Pode tornar-se patogénico, em condições específicas, com evolução frequentemente fatal, particularmente em indivíduos imunocomprometidos. A doença inicia-se com a inalação do fungo para os seios perinasais. 0 fungo pode invadir o palato, os seios perinasais, o seio cavernoso, as órbitas e cavidade craniana. A chave para uma terapêutica de sucesso inclui, a suspeição c1ínica e diagnóstico precoces e a estabilização das comorbilidades, em conjunto com uma terapêutica médica e cirúrgica agressivas. Apresentamos três casos c1ínicos de mucormicose rino-sinusal em doentes imunocomprometidos (sexo masculino), com idade media de 70 anos, com diagnóstico histopatologico de mucormicose, tratados no último ano (2009), no Serviço de Otorrinolaringologia do Hospital de S.José.Todos os doentes foram tratados com anfotericina B lipossómica e dois deles, foram submetidos a desbridamento cirúrgico, o desfecho foi fatal em dois dos doentes. A mucormicose caracteriza-se por um quadro c1ínico grave, que exige um diagnóstico precise e tratamento rápido, já que apresenta mortalidade elevada, não só pelas características da infecção, mas também pelas condições subjacentes aos doentes.