Accurate prediction of scorpion toxin functional properties from primary structures

Scorpion toxins are common experimental tools for studies of biochemical and pharmacological properties of ion channels. The number of functionally annotated scorpion toxins is steadily growing, but the number of identified toxin sequences is increasing at much faster pace. With an estimated 100,000 different variants, bioinformatic analysis of scorpion toxins is becoming a necessary tool for their systematic functional analysis. Here, we report a bioinformatics-driven system involving scorpion toxin structural classification, functional annotation, database technology, sequence comparison, nearest neighbour analysis, and decision rules which produces highly accurate predictions of scorpion toxin functional properties. (c) 2005 Elsevier Inc. All rights reserved.

Integrated cultivation of the red alga Kappaphycus alvarezii and the pearl oyster Pinctada martensi

The effect of simultaneously cultivating the pearl oyster Pinctada martensi and the red alga Kappaphycus alvarezii on growth rates of both species was investigated in laboratory and field studies conducted from December 1993 to June 1995. The two study sites were in subtidal areas 100 km apart off the east coast of Hainan Island, China. Pearl oysters were cultivated in the center of an algal farm and red alga was cultivated in the center of the pearl oyster farm. These field experiments showed higher growth rates of both P. martensi and K. alvarezii in a co-culture system than in a monospecies culture system. Laboratory studies showed that the algae removed nitrogenous wastes released by pearl oysters. Algae treated with pearl oyster wastes grew much faster than those without oyster wastes. Algae treated with the seawater to which NH4Cl, NaNO3 and NaNO2 were added grew at the same rate as those treated with natural seawater containing oyster nitrogenous wastes, suggesting that enhanced growth of algae in the co-culture system was largely due to nitrogenous metabolites of the pearl oysters. In the co-culture, growth of pearl oysters was positively influenced by the presence of rapidly growing algae but when seawater temperature decreased below 20 degrees C, the algae grew slowly and there was no measurable benefit of mixed culture to either algae or pearl oyster.

Revision der paläarktischen Arten der Gattung Lygus Hahn (Heteroptera, Miridae)

Als Ergebnis der Revision der Gattung Lygus Hahn (Heteroptera, Miridae, Insecta) wurden die fünf neuen Arten beschrieben: L. sibiricus Aglyamzyanov, 1990, L. orientis Aglyamzyanov, 1994, L. izyaslavi Aglyamzyanov, 1994, L. monticola Aglyamzyanov, 1994 und L. martensi Aglyamzyanov, 2003. Die vier Speziessnamen wurden synonymisiert: L. dracunculi Josifov, 1992, L. alashanensis Qi, 1993, L. renati Schwartz, 1998 (L. elegans Aglyamzyanov, 1994) = L. poluensis (Wagner, 1967) und L. kerzhneri Qi, 1993 = L. punctatus (Zetterstedt, 1838). Artstatus von L. israelensis Linnavuori, 1962 wurde wiederhergestellt. Nach aktuellen Angaben wurden in der Paläarktis 19 Lygus-Arten festgestellt: L. discrepans Reuter, 1906; L. gemellatus (Herrich-Schaeffer, 1835); L. hsiaoi Zheng & Yu, 1992; L. israelensis Linnavuori, 1962; L. italicus Wagner, 1950; L. izyaslavi Aglyamzyanov, 1994; L. maritimus Wagner, 1949; L. martensi Aglyamzyanov, 2003; L. monticola Aglyamzyanov, 1994; L. orientis Aglyamzyanov, 1994; L. pachycnemis Reuter, 1879; L. paradiscrepans Zheng & Yu, 1992; L. poluensis (Wagner, 1967); L. pratensis (Linnaeus, 1758); L. punctatus (Zetterstedt, 1838); L. rugulipennis Poppius, 1911; L. sibiricus Aglyamzyanov, 1990; L. tibetanus Zheng & Yu, 1992 und L. wagneri Remane, 1955. Es wurden die diagnostischen Merkmale analysiert, eine Bestimmungstabelle erstellt und die Areale der Verbreitung der einigen Arten präzisiert.

Late Quaternary radiolarian assemblages of ODP Site 181-1124

Abundant and diverse polycystine radiolarian faunas from ODP Leg 181, Site 1123 (0-1.2 Ma at ~21 kyr resolution) and Site 1124 (0-0.6 Ma, ~5 kyr resolution, with a disconformity between 0.42-0.22 Ma) have been used to infer Pleistocene-Holocene paleoceanographic changes north of the Subtropical Front (STF), offshore eastern New Zealand, southwest Pacific. The abundance of warm-water taxa relative to cool-water taxa was used to determine a radiolarian paleotemperature index, the Subtropical (ST) Index. ST Index variations show strong covariance with benthic foraminifera oxygen isotope records from Site 1123 and exhibit similar patterns through Glacial-Interglacial (G-I) cycles of marine isotope stages (MIS) 15-1. At Site 1123, warm-water taxa peak in abundance during Interglacials (reaching ~8% of the total fauna). Within Glacials cool-water taxa increase to ~15% (MIS2) of the fauna. Changes in radiolarian assemblages at Site 1124 indicate similar but much better resolved trends through MIS15-12 and 7-1. Pronounced increases in warm-water taxa occur at the onset of Interglacials (reaching ~15% of the fauna), whereas the abundance of cool-water taxa increases in Glacials peaking in MIS2 (~17% of the fauna). Overall warmer conditions at Site 1124 during the last 600 kyrs indicate sustained influence of the subtropical, warm East Cape Current (ECC). During Interglacials radiolarian assemblages suggest an increase in marine productivity at both sites which might be due to predominance of micronutrient-rich Subtropical Water. At Site 1123, an increased abundance of deep-dwelling taxa in MIS 13 and 9 suggests enhanced vertical mixing. During Glacials, reduced vigour of ECC flow combined with northward expansion of cool, micronutrient-poor Subantarctic Water occurs. Only at Site 1123 there is evidence of a longitudinal shift of the STF, reaching as far north as 41°S.

Radiolarian abundance of sediment core Y8

A high-resolution record of radiolarian faunal changes from Site Y8 south of the Subtropical Front (STF), offshore eastern New Zealand, provides insight into the paleoceanographic history of the last 265 kyrs. Quantitative analysis of radiolarian paleotemperature indicators and radiolarian-based sea surface temperature (SST) estimates reveal distinct shifts during glacial-interglacial (G-I) climate cycles encompassing marine isotope stages (MIS) 8-1. Faunas at Site Y8 are abundant and diverse and consist of a mixture of species typical of the subantarctic, transitional and subtropical zones which is characteristic of subantarctic waters just south of the STF. During interglacials, diverse radiolarian faunas have increased numbers of warm-water taxa (not, vert, similar 15%) while cool-water taxa decrease to not, vert, similar 11% of the assemblage. Warmest climate conditions occurred during MIS 5.5 and the early Holocene Climatic Optimum (HCO) at the onset of MIS 1 where SSTs reach maxima of 12.8 and 12.9 °C, respectively. This suggests that temperatures during the HCO were comparable to the Eemian, one of the warmest interglacial intervals of the Late Quaternary. Glacials are characterized by less diverse radiolarian faunas with cool-water taxa increasing to 49% of the assemblage. Coolest climate conditions occurred in MIS 4 and 2 where SSTs are reduced to 5.4 °C and 4.3 °C, respectively. Radiolarian faunal changes and SST estimates clearly identify major water masses and oceanic fronts in the offshore eastern New Zealand area. During warmest MIS 5.5 and early MIS 1 substantial influence of northern-sourced Subtropical Surface Water (STW) is evident at Site Y8. This implies southward incursions of STW around the eastern crest of Chatham Rise with the STF displaced towards higher latitudes and spinning off eddies as far south as Campbell Plateau. Additionally, increased flow of the Southland Current (SC) might have enhanced the local occurrence of warm-water radiolarians derived from the subtropical Tasman Sea. Coolest glacials are marked by a strong inflow of cool, southern-sourced waters at Site Y8 indicating a more vigorous flow along the Subantarctic Front (SAF).